Wall clock time and date at job start Tue Mar 31 2020 19:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.43510 * 2 1 4 4 C 1.54262 * 110.59791 * 237.37958 * 2 1 3 5 5 C 1.53874 * 106.59973 * 217.65924 * 4 2 1 6 6 C 1.54275 * 106.59525 * 359.97438 * 5 4 2 7 7 H 1.08999 * 110.59720 * 264.87567 * 6 5 4 8 8 C 1.50703 * 110.48485 * 142.29207 * 6 5 4 9 9 O 1.21283 * 119.99488 * 245.22064 * 8 6 5 10 10 N 1.34777 * 120.00290 * 65.22504 * 8 6 5 11 11 C 1.46498 * 119.99828 * 180.27728 * 10 8 6 12 12 C 1.50700 * 109.46769 * 179.72341 * 11 10 8 13 13 N 1.31794 * 119.09572 * 90.00362 * 12 11 10 14 14 C 1.32792 * 120.71816 * 179.97438 * 13 12 11 15 15 O 1.35511 * 120.51604 * 180.02562 * 14 13 12 16 16 C 1.39425 * 118.97417 * 359.97438 * 14 13 12 17 17 C 1.38185 * 118.35154 * 0.02562 * 16 14 13 18 18 C 1.50699 * 120.41416 * 180.02562 * 17 16 14 19 19 N 1.46498 * 109.47312 * 94.99702 * 18 17 16 20 20 C 1.36938 * 120.00078 * 180.02562 * 19 18 17 21 21 H 1.07999 * 119.99845 * 0.02562 * 20 19 18 22 22 C 1.38815 * 119.99877 * 180.02562 * 20 19 18 23 23 N 1.31616 * 120.00017 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99808 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47027 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46872 * 120.00065 * 24 22 20 27 27 H 1.48493 * 109.47299 * 239.99939 * 24 22 20 28 28 N 1.31759 * 119.09019 * 269.72381 * 12 11 10 29 29 C 1.54885 * 104.19634 * 23.60875 * 6 5 4 30 30 H 1.09001 * 109.47076 * 297.46727 * 1 2 3 31 31 H 1.09002 * 109.46768 * 57.45673 * 1 2 3 32 32 H 1.08993 * 109.47442 * 177.45877 * 1 2 3 33 33 H 1.09003 * 110.02937 * 336.94041 * 4 2 1 34 34 H 1.08993 * 110.03657 * 98.37446 * 4 2 1 35 35 H 1.08997 * 110.03862 * 240.71916 * 5 4 2 36 36 H 1.09002 * 110.03396 * 119.27795 * 5 4 2 37 37 H 0.97001 * 119.99727 * 359.97438 * 10 8 6 38 38 H 1.09004 * 109.46963 * 299.72135 * 11 10 8 39 39 H 1.08994 * 109.47567 * 59.72287 * 11 10 8 40 40 H 0.96705 * 114.00109 * 89.99474 * 15 14 13 41 41 H 1.08000 * 120.82505 * 180.02562 * 16 14 13 42 42 H 1.09003 * 109.47312 * 215.00337 * 18 17 16 43 43 H 1.09005 * 109.47023 * 334.99955 * 18 17 16 44 44 H 0.97001 * 119.99969 * 0.02562 * 19 18 17 45 45 H 0.97003 * 119.99615 * 180.02562 * 23 22 20 46 46 H 1.09003 * 110.75550 * 80.37610 * 29 6 5 47 47 H 1.09003 * 110.75743 * 203.55574 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0727 -0.7784 -1.2162 5 6 3.3202 -1.5377 -0.7312 6 6 3.4923 -1.1935 0.7628 7 1 4.1904 -0.3658 0.8876 8 6 3.9649 -2.4008 1.5310 9 8 3.2503 -2.9012 2.3736 10 7 5.1816 -2.9244 1.2819 11 6 5.6384 -4.1016 2.0245 12 6 7.0175 -4.4874 1.5552 13 7 8.0682 -3.9663 2.1564 14 6 9.2981 -4.2842 1.7696 15 8 10.3755 -3.7463 2.3910 16 6 9.4638 -5.1807 0.7147 17 6 8.3344 -5.7026 0.1134 18 6 8.4596 -6.6759 -1.0302 19 7 8.3891 -8.0457 -0.5157 20 6 8.4813 -9.1063 -1.3770 21 1 8.6064 -8.9328 -2.4356 22 6 8.4140 -10.4042 -0.8895 23 7 8.2621 -10.6155 0.4007 24 14 8.5391 -11.8509 -2.0645 25 1 8.7054 -11.3486 -3.4521 26 1 9.7104 -12.6869 -1.6975 27 1 7.3018 -12.6673 -1.9781 28 7 7.1398 -5.3408 0.5587 29 6 2.0726 -0.7795 1.2232 30 1 -0.3633 0.4740 0.9118 31 1 -0.3633 0.5528 -0.8663 32 1 -0.3634 -1.0266 -0.0456 33 1 1.3221 -1.4834 -1.5735 34 1 2.3437 -0.0853 -2.0126 35 1 4.1965 -1.2130 -1.2921 36 1 3.1748 -2.6111 -0.8531 37 1 5.7529 -2.5243 0.6078 38 1 5.6684 -3.8704 3.0893 39 1 4.9510 -4.9296 1.8517 40 1 10.6943 -4.2632 3.1436 41 1 10.4505 -5.4604 0.3760 42 1 7.6471 -6.5113 -1.7380 43 1 9.4151 -6.5252 -1.5326 44 1 8.2771 -8.2015 0.4352 45 1 8.2155 -11.5226 0.7414 46 1 1.4598 -1.6584 1.4235 47 1 2.1236 -0.1375 2.1026 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264583812.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:01 Heat of formation + Delta-G solvation = -32.544928 kcal Electronic energy + Delta-G solvation = -27851.707568 eV Core-core repulsion = 23841.561242 eV Total energy + Delta-G solvation = -4010.146326 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.28424 -40.23916 -37.99264 -37.69100 -35.68603 -34.65924 -33.15676 -32.16965 -31.54402 -30.61982 -29.23119 -27.70063 -26.59363 -25.39197 -23.53017 -23.01576 -22.07680 -21.47914 -20.20256 -20.01465 -18.84910 -17.87277 -17.32840 -17.28109 -16.51793 -16.30779 -15.70731 -15.33042 -15.02768 -14.95089 -14.55940 -14.26166 -13.96161 -13.86212 -13.70676 -13.43042 -13.34196 -12.99509 -12.87172 -12.68408 -12.44831 -12.15603 -11.92620 -11.89436 -11.47417 -11.18854 -11.08629 -11.08040 -10.91480 -10.90166 -10.73357 -10.64785 -10.41706 -10.14099 -10.00384 -9.83662 -9.42397 -9.24599 -9.22429 -9.02002 -7.09011 -5.86759 -3.18381 0.73675 0.97361 2.51402 2.94023 3.16406 3.38401 3.43849 3.46435 3.76099 3.85758 4.16574 4.21189 4.31877 4.42170 4.54137 4.80775 4.88123 4.95203 5.01277 5.08529 5.10666 5.22139 5.27733 5.29415 5.31784 5.34717 5.45919 5.48771 5.57498 5.60318 5.69909 5.72857 5.74615 5.86436 5.92939 5.95069 5.98094 6.14177 6.17119 6.20416 6.32292 6.42529 6.99027 7.25690 7.30324 7.59881 8.06285 8.07498 8.28824 9.41260 9.91772 10.27220 11.35619 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011165 B = 0.002418 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.256268 B =11577.404753 C =13185.247077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 H 0.074 0.926 4 C -0.119 4.119 5 C -0.116 4.116 6 C -0.114 4.114 7 H 0.100 0.900 8 C 0.524 3.476 9 O -0.537 6.537 10 N -0.720 5.720 11 C 0.195 3.805 12 C 0.316 3.684 13 N -0.533 5.533 14 C 0.354 3.646 15 O -0.478 6.478 16 C -0.218 4.218 17 C 0.200 3.800 18 C 0.196 3.804 19 N -0.722 5.722 20 C -0.245 4.245 21 H 0.075 0.925 22 C -0.010 4.010 23 N -0.930 5.930 24 Si 0.912 3.088 25 H -0.279 1.279 26 H -0.291 1.291 27 H -0.290 1.290 28 N -0.491 5.491 29 C -0.100 4.100 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.401 0.599 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.408 0.592 41 H 0.156 0.844 42 H 0.048 0.952 43 H 0.044 0.956 44 H 0.385 0.615 45 H 0.257 0.743 46 H 0.083 0.917 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.362 22.988 0.690 23.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 H 0.092 0.908 4 C -0.157 4.157 5 C -0.154 4.154 6 C -0.135 4.135 7 H 0.118 0.882 8 C 0.310 3.690 9 O -0.413 6.413 10 N -0.372 5.372 11 C 0.070 3.930 12 C 0.047 3.953 13 N -0.259 5.259 14 C 0.166 3.834 15 O -0.285 6.285 16 C -0.242 4.242 17 C 0.055 3.945 18 C 0.069 3.931 19 N -0.367 5.367 20 C -0.375 4.375 21 H 0.093 0.907 22 C -0.207 4.207 23 N -0.578 5.578 24 Si 0.742 3.258 25 H -0.204 1.204 26 H -0.218 1.218 27 H -0.217 1.217 28 N -0.208 5.208 29 C -0.137 4.137 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.235 0.765 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.267 0.733 41 H 0.174 0.826 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.219 0.781 45 H 0.066 0.934 46 H 0.102 0.898 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.717 23.182 1.053 24.455 hybrid contribution 1.576 -1.296 -0.374 2.074 sum -6.142 21.885 0.678 22.741 Atomic orbital electron populations 1.21794 0.94757 1.02051 1.01569 1.21982 0.95804 0.99167 0.94770 0.90765 1.22203 0.96966 0.98876 0.97612 1.22129 0.98877 1.01404 0.92986 1.22189 0.99487 0.95895 0.95922 0.88178 1.20553 0.80468 0.84935 0.83008 1.90713 1.54633 1.62082 1.33868 1.45851 1.18326 1.31118 1.41926 1.19881 0.87489 0.89096 0.96578 1.22724 0.93884 0.89870 0.88815 1.67678 0.99151 1.27020 1.32048 1.19373 0.85478 0.88051 0.90449 1.84688 1.41693 1.52589 1.49541 1.22975 1.02708 0.98628 0.99849 1.22201 0.86551 0.91641 0.94121 1.19717 0.99896 0.83678 0.89839 1.42180 1.88720 0.98024 1.07819 1.19243 1.42910 0.84977 0.90399 0.90675 1.24790 1.02317 0.97469 0.96076 1.69681 1.56360 1.20300 1.11423 0.86054 0.77281 0.82599 0.79824 1.20385 1.21769 1.21698 1.68196 1.27743 1.12663 1.12154 1.22453 0.93515 1.00618 0.97164 0.92600 0.92743 0.92409 0.91326 0.91616 0.91044 0.90946 0.76494 0.88750 0.88226 0.73286 0.82602 0.93447 0.93795 0.78095 0.93360 0.89826 0.91190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.15 37.16 0.34 -0.60 16 2 C -0.10 -0.68 3.45 -88.98 -0.31 -0.99 16 3 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 4 C -0.12 -0.83 6.38 -25.62 -0.16 -1.00 16 5 C -0.12 -0.91 6.35 -25.61 -0.16 -1.07 16 6 C -0.11 -0.99 3.25 -90.11 -0.29 -1.28 16 7 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 8 C 0.52 6.28 6.99 -10.98 -0.08 6.20 16 9 O -0.54 -8.38 15.72 5.55 0.09 -8.29 16 10 N -0.72 -8.28 5.54 -61.47 -0.34 -8.62 16 11 C 0.19 2.62 6.10 -5.19 -0.03 2.59 16 12 C 0.32 4.79 7.01 -157.23 -1.10 3.69 16 13 N -0.53 -7.93 10.36 -10.78 -0.11 -8.04 16 14 C 0.35 4.95 7.83 -16.69 -0.13 4.82 16 15 O -0.48 -5.41 13.58 -18.23 -0.25 -5.65 16 16 C -0.22 -3.19 9.79 -39.16 -0.38 -3.57 16 17 C 0.20 3.42 6.18 -82.31 -0.51 2.91 16 18 C 0.20 3.79 6.61 -5.20 -0.03 3.76 16 19 N -0.72 -17.82 5.59 -61.08 -0.34 -18.16 16 20 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 21 H 0.08 1.95 7.83 -52.49 -0.41 1.53 16 22 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 23 N -0.93 -27.74 13.06 55.49 0.72 -27.02 16 24 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 N -0.49 -8.43 10.27 -7.06 -0.07 -8.50 16 29 C -0.10 -0.87 5.37 -24.76 -0.13 -1.00 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 33 H 0.07 0.50 7.80 -51.93 -0.41 0.09 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.67 7.83 -51.93 -0.41 0.26 16 37 H 0.40 4.00 8.46 -40.82 -0.35 3.65 16 38 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.41 2.66 9.06 45.56 0.41 3.07 16 41 H 0.16 2.01 8.06 -52.49 -0.42 1.58 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.04 0.78 8.06 -51.93 -0.42 0.37 16 44 H 0.39 10.26 7.66 -40.82 -0.31 9.95 16 45 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.08 0.89 7.38 -51.93 -0.38 0.50 16 47 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 394.90 15.07 5.95 5.95 Total: -1.00 -33.63 394.90 -9.08 -42.72 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -6.47 Total: 11.43 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: -3.23 Total: 7.31 kcal Atomic # 7 Polarization: -70.20 SS G_CDS: -0.14 Total: -70.34 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -0.16 Total: -13.95 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.63 -9.08 -42.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264583812.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.172 kcal (2) G-P(sol) polarization free energy of solvation -33.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds