Wall clock time and date at job start Tue Mar 31 2020 19:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.43510 * 2 1 4 4 C 1.54262 * 110.59791 * 237.37958 * 2 1 3 5 5 C 1.53874 * 106.59973 * 217.65924 * 4 2 1 6 6 C 1.54275 * 106.59525 * 359.97438 * 5 4 2 7 7 H 1.08999 * 110.59720 * 264.87567 * 6 5 4 8 8 C 1.50703 * 110.48485 * 142.29207 * 6 5 4 9 9 O 1.21283 * 119.99488 * 245.22064 * 8 6 5 10 10 N 1.34777 * 120.00290 * 65.22504 * 8 6 5 11 11 C 1.46498 * 119.99828 * 180.27728 * 10 8 6 12 12 C 1.50700 * 109.46769 * 179.72341 * 11 10 8 13 13 N 1.31794 * 119.09572 * 90.00362 * 12 11 10 14 14 C 1.32792 * 120.71816 * 179.97438 * 13 12 11 15 15 O 1.35511 * 120.51604 * 180.02562 * 14 13 12 16 16 C 1.39425 * 118.97417 * 359.97438 * 14 13 12 17 17 C 1.38185 * 118.35154 * 0.02562 * 16 14 13 18 18 C 1.50699 * 120.41416 * 180.02562 * 17 16 14 19 19 N 1.46498 * 109.47312 * 94.99702 * 18 17 16 20 20 C 1.36938 * 120.00078 * 180.02562 * 19 18 17 21 21 H 1.07999 * 119.99845 * 0.02562 * 20 19 18 22 22 C 1.38815 * 119.99877 * 180.02562 * 20 19 18 23 23 N 1.31616 * 120.00017 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99808 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47027 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46872 * 120.00065 * 24 22 20 27 27 H 1.48493 * 109.47299 * 239.99939 * 24 22 20 28 28 N 1.31759 * 119.09019 * 269.72381 * 12 11 10 29 29 C 1.54885 * 104.19634 * 23.60875 * 6 5 4 30 30 H 1.09001 * 109.47076 * 297.46727 * 1 2 3 31 31 H 1.09002 * 109.46768 * 57.45673 * 1 2 3 32 32 H 1.08993 * 109.47442 * 177.45877 * 1 2 3 33 33 H 1.09003 * 110.02937 * 336.94041 * 4 2 1 34 34 H 1.08993 * 110.03657 * 98.37446 * 4 2 1 35 35 H 1.08997 * 110.03862 * 240.71916 * 5 4 2 36 36 H 1.09002 * 110.03396 * 119.27795 * 5 4 2 37 37 H 0.97001 * 119.99727 * 359.97438 * 10 8 6 38 38 H 1.09004 * 109.46963 * 299.72135 * 11 10 8 39 39 H 1.08994 * 109.47567 * 59.72287 * 11 10 8 40 40 H 0.96705 * 114.00109 * 89.99474 * 15 14 13 41 41 H 1.08000 * 120.82505 * 180.02562 * 16 14 13 42 42 H 1.09003 * 109.47312 * 215.00337 * 18 17 16 43 43 H 1.09005 * 109.47023 * 334.99955 * 18 17 16 44 44 H 0.97001 * 119.99969 * 0.02562 * 19 18 17 45 45 H 0.97003 * 119.99615 * 180.02562 * 23 22 20 46 46 H 1.09003 * 110.75550 * 80.37610 * 29 6 5 47 47 H 1.09003 * 110.75743 * 203.55574 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0727 -0.7784 -1.2162 5 6 3.3202 -1.5377 -0.7312 6 6 3.4923 -1.1935 0.7628 7 1 4.1904 -0.3658 0.8876 8 6 3.9649 -2.4008 1.5310 9 8 3.2503 -2.9012 2.3736 10 7 5.1816 -2.9244 1.2819 11 6 5.6384 -4.1016 2.0245 12 6 7.0175 -4.4874 1.5552 13 7 8.0682 -3.9663 2.1564 14 6 9.2981 -4.2842 1.7696 15 8 10.3755 -3.7463 2.3910 16 6 9.4638 -5.1807 0.7147 17 6 8.3344 -5.7026 0.1134 18 6 8.4596 -6.6759 -1.0302 19 7 8.3891 -8.0457 -0.5157 20 6 8.4813 -9.1063 -1.3770 21 1 8.6064 -8.9328 -2.4356 22 6 8.4140 -10.4042 -0.8895 23 7 8.2621 -10.6155 0.4007 24 14 8.5391 -11.8509 -2.0645 25 1 8.7054 -11.3486 -3.4521 26 1 9.7104 -12.6869 -1.6975 27 1 7.3018 -12.6673 -1.9781 28 7 7.1398 -5.3408 0.5587 29 6 2.0726 -0.7795 1.2232 30 1 -0.3633 0.4740 0.9118 31 1 -0.3633 0.5528 -0.8663 32 1 -0.3634 -1.0266 -0.0456 33 1 1.3221 -1.4834 -1.5735 34 1 2.3437 -0.0853 -2.0126 35 1 4.1965 -1.2130 -1.2921 36 1 3.1748 -2.6111 -0.8531 37 1 5.7529 -2.5243 0.6078 38 1 5.6684 -3.8704 3.0893 39 1 4.9510 -4.9296 1.8517 40 1 10.6943 -4.2632 3.1436 41 1 10.4505 -5.4604 0.3760 42 1 7.6471 -6.5113 -1.7380 43 1 9.4151 -6.5252 -1.5326 44 1 8.2771 -8.2015 0.4352 45 1 8.2155 -11.5226 0.7414 46 1 1.4598 -1.6584 1.4235 47 1 2.1236 -0.1375 2.1026 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264583812.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:00 Heat of formation + Delta-G solvation = -59.407227 kcal Electronic energy + Delta-G solvation = -27852.872404 eV Core-core repulsion = 23841.561242 eV Total energy + Delta-G solvation = -4011.311163 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.46733 -41.15561 -38.89044 -38.55911 -37.16663 -35.96318 -34.66017 -33.23734 -32.68658 -32.07716 -29.91130 -28.76105 -28.22293 -26.07769 -25.25879 -24.19283 -23.14860 -22.67803 -20.96719 -20.72596 -19.92538 -19.44743 -18.82327 -18.22298 -17.55327 -17.05437 -16.87927 -16.70746 -16.40869 -15.96230 -15.78006 -15.45293 -15.41557 -14.94894 -14.64776 -14.49118 -14.33034 -14.14291 -14.01211 -13.92884 -13.54893 -13.18975 -13.11559 -12.97149 -12.81016 -12.56037 -12.15177 -12.08616 -11.97874 -11.81655 -11.77124 -11.73672 -11.53604 -11.48039 -11.29772 -11.04266 -10.99047 -10.57859 -10.44059 -10.28672 -9.09792 -7.98356 -5.29734 -0.42601 -0.23371 1.48944 1.50096 1.55481 1.60098 1.93254 2.08262 2.51057 2.62408 2.73323 3.10789 3.37143 3.45796 3.56573 3.73374 3.79898 3.87523 4.08069 4.10471 4.14789 4.24637 4.34112 4.39271 4.46449 4.48210 4.55978 4.58734 4.71004 4.76499 4.78493 4.87849 4.88734 5.03173 5.08896 5.10768 5.16063 5.18016 5.31478 5.35779 5.37105 5.48296 5.59282 5.79923 6.20657 6.37674 6.44459 6.87121 7.11227 7.28216 7.95118 8.20127 9.25254 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011165 B = 0.002418 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.256268 B =11577.404753 C =13185.247077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 H 0.091 0.909 4 C -0.118 4.118 5 C -0.114 4.114 6 C -0.107 4.107 7 H 0.127 0.873 8 C 0.522 3.478 9 O -0.578 6.578 10 N -0.711 5.711 11 C 0.200 3.800 12 C 0.318 3.682 13 N -0.536 5.536 14 C 0.364 3.636 15 O -0.474 6.474 16 C -0.211 4.211 17 C 0.183 3.817 18 C 0.198 3.802 19 N -0.736 5.736 20 C -0.243 4.243 21 H 0.086 0.914 22 C -0.075 4.075 23 N -0.971 5.971 24 Si 0.978 3.022 25 H -0.261 1.261 26 H -0.292 1.292 27 H -0.297 1.297 28 N -0.516 5.516 29 C -0.102 4.102 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.046 0.954 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.051 0.949 37 H 0.411 0.589 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.430 0.570 41 H 0.175 0.825 42 H 0.044 0.956 43 H 0.067 0.933 44 H 0.372 0.628 45 H 0.251 0.749 46 H 0.057 0.943 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.258 25.043 -0.525 25.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.109 0.891 4 C -0.155 4.155 5 C -0.152 4.152 6 C -0.128 4.128 7 H 0.144 0.856 8 C 0.310 3.690 9 O -0.457 6.457 10 N -0.363 5.363 11 C 0.074 3.926 12 C 0.049 3.951 13 N -0.263 5.263 14 C 0.176 3.824 15 O -0.284 6.284 16 C -0.235 4.235 17 C 0.039 3.961 18 C 0.072 3.928 19 N -0.379 5.379 20 C -0.374 4.374 21 H 0.104 0.896 22 C -0.267 4.267 23 N -0.621 5.621 24 Si 0.806 3.194 25 H -0.185 1.185 26 H -0.219 1.219 27 H -0.224 1.224 28 N -0.233 5.233 29 C -0.140 4.140 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.070 0.930 37 H 0.246 0.754 38 H 0.114 0.886 39 H 0.102 0.898 40 H 0.294 0.706 41 H 0.193 0.807 42 H 0.061 0.939 43 H 0.085 0.915 44 H 0.203 0.797 45 H 0.060 0.940 46 H 0.076 0.924 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.576 25.281 -0.203 26.123 hybrid contribution 1.274 -1.823 0.053 2.225 sum -5.302 23.458 -0.150 24.050 Atomic orbital electron populations 1.21798 0.94596 1.01601 1.02228 1.21975 0.95956 0.99607 0.93564 0.89102 1.22215 0.96298 0.98968 0.98065 1.22138 1.00209 1.00369 0.92488 1.22258 0.99844 0.94861 0.95849 0.85563 1.21211 0.79893 0.85399 0.82490 1.90695 1.55686 1.63511 1.35857 1.45789 1.18433 1.30354 1.41765 1.19736 0.86590 0.89397 0.96880 1.22816 0.94473 0.89450 0.88323 1.67760 0.99490 1.27130 1.31884 1.19434 0.85774 0.87077 0.90079 1.84656 1.40488 1.52783 1.50523 1.23082 1.02691 0.98221 0.99484 1.21907 0.87491 0.92288 0.94404 1.19774 1.00590 0.81711 0.90755 1.42343 1.88670 0.99903 1.06968 1.19688 1.40754 0.85794 0.91193 0.89577 1.25632 1.03257 1.00263 0.97552 1.69840 1.58604 1.20325 1.13330 0.85014 0.76525 0.79124 0.78701 1.18486 1.21944 1.22430 1.68119 1.28277 1.13629 1.13273 1.22447 0.93298 0.99919 0.98331 0.92380 0.91593 0.93505 0.92037 0.89893 0.89186 0.92975 0.75360 0.88558 0.89802 0.70602 0.80705 0.93859 0.91537 0.79698 0.93983 0.92447 0.90896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.15 71.98 0.66 -1.07 16 2 C -0.09 -1.13 3.45 -9.73 -0.03 -1.16 16 3 H 0.09 0.85 8.14 -2.39 -0.02 0.84 16 4 C -0.12 -1.45 6.38 31.32 0.20 -1.25 16 5 C -0.11 -1.64 6.35 31.32 0.20 -1.44 16 6 C -0.11 -1.74 3.25 -10.46 -0.03 -1.77 16 7 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 8 C 0.52 12.54 6.99 87.66 0.61 13.15 16 9 O -0.58 -18.72 15.72 -3.04 -0.05 -18.77 16 10 N -0.71 -16.17 5.54 -466.79 -2.58 -18.76 16 11 C 0.20 5.46 6.10 85.63 0.52 5.99 16 12 C 0.32 9.53 7.01 138.76 0.97 10.51 16 13 N -0.54 -15.21 10.36 -300.70 -3.12 -18.32 16 14 C 0.36 9.42 7.83 84.83 0.66 10.08 16 15 O -0.47 -9.31 13.58 -88.14 -1.20 -10.51 16 16 C -0.21 -5.79 9.79 22.54 0.22 -5.57 16 17 C 0.18 6.13 6.18 42.44 0.26 6.39 16 18 C 0.20 7.51 6.61 85.63 0.57 8.07 16 19 N -0.74 -36.34 5.59 -347.17 -1.94 -38.28 16 20 C -0.24 -13.08 9.99 84.03 0.84 -12.24 16 21 H 0.09 4.35 7.83 -2.91 -0.02 4.32 16 22 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 23 N -0.97 -58.97 13.06 21.65 0.28 -58.69 16 24 Si 0.98 45.13 29.55 68.60 2.03 47.15 16 25 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 26 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 27 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 28 N -0.52 -17.68 10.27 -176.23 -1.81 -19.49 16 29 C -0.10 -1.72 5.37 31.87 0.17 -1.55 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.05 0.65 8.08 -2.39 -0.02 0.63 16 33 H 0.06 0.85 7.80 -2.39 -0.02 0.83 16 34 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.05 0.96 7.83 -2.39 -0.02 0.94 16 37 H 0.41 7.76 8.46 -92.71 -0.78 6.97 16 38 H 0.10 2.59 8.14 -2.38 -0.02 2.57 16 39 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 40 H 0.43 4.27 9.06 -74.05 -0.67 3.59 16 41 H 0.18 4.04 8.06 -2.91 -0.02 4.02 16 42 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.07 2.24 8.06 -2.38 -0.02 2.22 16 44 H 0.37 20.14 7.66 -92.71 -0.71 19.43 16 45 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 46 H 0.06 1.28 7.38 -2.39 -0.02 1.26 16 47 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -73.01 394.90 -3.25 -76.26 By element: Atomic # 1 Polarization: 36.16 SS G_CDS: -1.15 Total: 35.01 kcal Atomic # 6 Polarization: 18.10 SS G_CDS: 6.29 Total: 24.39 kcal Atomic # 7 Polarization: -144.37 SS G_CDS: -9.17 Total: -153.54 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -1.24 Total: -29.27 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -73.01 -3.25 -76.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264583812.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.850 kcal (2) G-P(sol) polarization free energy of solvation -73.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds