Wall clock time and date at job start Tue Mar 31 2020 19:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.43771 * 2 1 4 4 C 1.54892 * 110.59807 * 122.61775 * 2 1 3 5 5 C 1.54888 * 102.74611 * 156.67207 * 4 2 1 6 6 C 1.54265 * 104.19721 * 322.05788 * 5 4 2 7 7 H 1.08997 * 110.07567 * 264.30049 * 6 5 4 8 8 C 1.50703 * 110.02964 * 142.89288 * 6 5 4 9 9 O 1.21285 * 120.00358 * 242.83208 * 8 6 5 10 10 N 1.34781 * 119.99809 * 62.83419 * 8 6 5 11 11 C 1.46505 * 119.99873 * 179.97438 * 10 8 6 12 12 C 1.50704 * 109.47025 * 180.02562 * 11 10 8 13 13 N 1.31792 * 119.09108 * 89.99482 * 12 11 10 14 14 C 1.32800 * 120.71068 * 179.97438 * 13 12 11 15 15 O 1.35516 * 120.50851 * 180.02562 * 14 13 12 16 16 C 1.39416 * 118.97715 * 0.02562 * 14 13 12 17 17 C 1.38189 * 118.35344 * 359.97438 * 16 14 13 18 18 C 1.50698 * 120.41361 * 180.02562 * 17 16 14 19 19 N 1.46493 * 109.47046 * 94.99939 * 18 17 16 20 20 C 1.36940 * 120.00189 * 180.02562 * 19 18 17 21 21 H 1.08004 * 119.99586 * 359.97438 * 20 19 18 22 22 C 1.38808 * 120.00513 * 180.02562 * 20 19 18 23 23 N 1.31624 * 119.99753 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00239 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47151 * 0.02562 * 24 22 20 26 26 H 1.48511 * 109.47070 * 119.99957 * 24 22 20 27 27 H 1.48494 * 109.47328 * 239.99533 * 24 22 20 28 28 N 1.31758 * 119.09117 * 269.73101 * 12 11 10 29 29 C 1.53873 * 106.59997 * 23.61451 * 6 5 4 30 30 H 1.08994 * 109.47453 * 180.70330 * 1 2 3 31 31 H 1.09000 * 109.47081 * 300.70410 * 1 2 3 32 32 H 1.08999 * 109.46805 * 60.69964 * 1 2 3 33 33 H 1.08992 * 110.75663 * 274.99068 * 4 2 1 34 34 H 1.09000 * 110.75339 * 38.36092 * 4 2 1 35 35 H 1.09007 * 110.48520 * 203.37936 * 5 4 2 36 36 H 1.08998 * 110.59686 * 80.79466 * 5 4 2 37 37 H 0.97004 * 120.00142 * 359.97438 * 10 8 6 38 38 H 1.09005 * 109.46866 * 299.99565 * 11 10 8 39 39 H 1.08998 * 109.47345 * 59.99892 * 11 10 8 40 40 H 0.96702 * 114.00308 * 90.00291 * 15 14 13 41 41 H 1.08003 * 120.82289 * 179.97438 * 16 14 13 42 42 H 1.08997 * 109.46772 * 214.99865 * 18 17 16 43 43 H 1.09002 * 109.46794 * 334.99936 * 18 17 16 44 44 H 0.97003 * 120.00499 * 359.97438 * 19 18 17 45 45 H 0.97003 * 119.99948 * 180.02562 * 23 22 20 46 46 H 1.09002 * 110.03017 * 240.71676 * 29 6 5 47 47 H 1.08996 * 110.07624 * 119.30418 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0749 -0.7815 1.2212 5 6 3.4937 -1.1948 0.7571 6 6 3.3184 -1.5370 -0.7368 7 1 3.1732 -2.6102 -0.8603 8 6 4.5282 -1.0873 -1.5148 9 8 4.4153 -0.2402 -2.3754 10 7 5.7356 -1.6266 -1.2543 11 6 6.9116 -1.1898 -2.0110 12 6 8.1260 -1.9415 -1.5301 13 7 8.4439 -3.0824 -2.1080 14 6 9.5074 -3.7711 -1.7103 15 8 9.8308 -4.9436 -2.3078 16 6 10.2861 -3.2691 -0.6685 17 6 9.9159 -2.0692 -0.0915 18 6 10.7245 -1.4838 1.0373 19 7 11.6902 -0.5227 0.4990 20 6 12.5406 0.1397 1.3436 21 1 12.4989 -0.0462 2.4067 22 6 13.4552 1.0508 0.8336 23 7 13.5056 1.2776 -0.4620 24 14 14.6146 1.9548 1.9858 25 1 14.3587 1.5241 3.3838 26 1 16.0196 1.6409 1.6210 27 1 14.3879 3.4177 1.8687 28 7 8.8438 -1.4372 -0.5469 29 6 2.0699 -0.7773 -1.2183 30 1 -0.3634 -1.0275 0.0126 31 1 -0.3633 0.5247 0.8836 32 1 -0.3633 0.5029 -0.8962 33 1 2.1278 -0.1381 2.0993 34 1 1.4627 -1.6608 1.4216 35 1 3.8368 -2.0687 1.3110 36 1 4.1932 -0.3679 0.8796 37 1 5.8260 -2.3039 -0.5658 38 1 6.7567 -1.3907 -3.0711 39 1 7.0630 -0.1207 -1.8621 40 1 10.4248 -4.8486 -3.0649 41 1 11.1572 -3.8048 -0.3209 42 1 10.0590 -0.9774 1.7364 43 1 11.2564 -2.2820 1.5552 44 1 11.7279 -0.3561 -0.4559 45 1 14.1450 1.9140 -0.8184 46 1 1.3184 -1.4819 -1.5745 47 1 2.3382 -0.0835 -2.0149 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264583813.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:04 Heat of formation + Delta-G solvation = -31.676980 kcal Electronic energy + Delta-G solvation = -27891.558977 eV Core-core repulsion = 23881.450288 eV Total energy + Delta-G solvation = -4010.108689 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.28860 -40.30045 -37.95894 -37.65711 -35.69159 -34.67452 -33.15944 -32.17437 -31.53538 -30.61806 -29.20318 -27.69713 -26.59495 -25.35116 -23.53072 -23.00034 -22.03413 -21.48784 -20.53208 -19.69403 -18.84235 -17.90323 -17.58019 -17.28991 -16.51682 -15.78065 -15.61583 -15.44873 -15.27601 -14.91904 -14.63894 -14.22587 -14.10393 -13.88794 -13.74655 -13.35224 -13.23958 -13.00015 -12.89067 -12.68527 -12.26696 -12.15709 -11.92734 -11.90438 -11.53397 -11.13580 -11.08398 -11.05288 -10.90200 -10.89920 -10.70646 -10.65287 -10.41844 -10.14112 -10.00109 -9.83735 -9.42709 -9.25489 -9.22622 -9.02036 -7.09028 -5.86785 -3.18453 0.73484 0.97174 2.51213 2.93694 3.16224 3.38366 3.43832 3.46418 3.76095 3.85524 4.18867 4.24516 4.31819 4.43693 4.54105 4.77484 4.88045 4.95612 5.04920 5.10053 5.16125 5.24333 5.27748 5.30488 5.33585 5.34329 5.45856 5.51722 5.57952 5.62494 5.68263 5.72535 5.74749 5.87972 5.90339 5.92857 6.05866 6.16005 6.17038 6.23787 6.32216 6.42457 6.98824 7.25525 7.29880 7.59803 8.05690 8.07305 8.28807 9.41203 9.91712 10.27121 11.35581 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011131 B = 0.002438 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.895787 B =11480.833506 C =13102.449577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 H 0.076 0.924 4 C -0.118 4.118 5 C -0.117 4.117 6 C -0.111 4.111 7 H 0.098 0.902 8 C 0.523 3.477 9 O -0.536 6.536 10 N -0.719 5.719 11 C 0.195 3.805 12 C 0.316 3.684 13 N -0.533 5.533 14 C 0.354 3.646 15 O -0.478 6.478 16 C -0.217 4.217 17 C 0.200 3.800 18 C 0.196 3.804 19 N -0.722 5.722 20 C -0.245 4.245 21 H 0.075 0.925 22 C -0.010 4.010 23 N -0.930 5.930 24 Si 0.912 3.088 25 H -0.279 1.279 26 H -0.291 1.291 27 H -0.290 1.290 28 N -0.491 5.491 29 C -0.114 4.114 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.401 0.599 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.408 0.592 41 H 0.156 0.844 42 H 0.048 0.952 43 H 0.044 0.956 44 H 0.385 0.615 45 H 0.256 0.744 46 H 0.068 0.932 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.184 -10.723 -0.408 23.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.094 0.906 4 C -0.156 4.156 5 C -0.155 4.155 6 C -0.133 4.133 7 H 0.116 0.884 8 C 0.309 3.691 9 O -0.413 6.413 10 N -0.371 5.371 11 C 0.070 3.930 12 C 0.047 3.953 13 N -0.259 5.259 14 C 0.166 3.834 15 O -0.285 6.285 16 C -0.242 4.242 17 C 0.055 3.945 18 C 0.069 3.931 19 N -0.367 5.367 20 C -0.375 4.375 21 H 0.093 0.907 22 C -0.207 4.207 23 N -0.578 5.578 24 Si 0.743 3.257 25 H -0.204 1.204 26 H -0.218 1.218 27 H -0.217 1.217 28 N -0.207 5.207 29 C -0.152 4.152 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.235 0.765 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.267 0.733 41 H 0.174 0.826 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.219 0.781 45 H 0.066 0.934 46 H 0.086 0.914 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -22.241 -9.864 -0.795 24.343 hybrid contribution 2.014 -0.277 0.352 2.064 sum -20.227 -10.140 -0.443 22.631 Atomic orbital electron populations 1.21789 0.94933 1.01678 1.01665 1.21988 0.95472 0.99667 0.94566 0.90575 1.22566 0.95334 0.99948 0.97745 1.22371 0.98313 1.02041 0.92773 1.21938 0.93480 1.01935 0.95925 0.88387 1.20587 0.84023 0.81249 0.83241 1.90688 1.85260 1.32064 1.33268 1.45820 1.07151 1.43731 1.40442 1.19887 0.78739 0.98177 0.96238 1.22722 0.95656 0.87863 0.89062 1.67683 1.18445 1.08081 1.31687 1.19374 0.88826 0.84618 0.90539 1.84689 1.69791 1.24221 1.49811 1.22974 1.02598 0.98473 1.00109 1.22202 0.89485 0.88893 0.93927 1.19716 0.90239 0.93238 0.89933 1.42179 1.39494 1.47573 1.07498 1.19243 1.10685 1.17190 0.90400 0.90676 1.24790 0.99956 0.99900 0.96015 1.69684 1.39008 1.38405 1.10674 0.86052 0.80489 0.79498 0.79706 1.20386 1.21770 1.21699 1.68193 1.06455 1.34345 1.11755 1.22247 0.94614 0.99412 0.98901 0.92687 0.92724 0.92625 0.91249 0.91204 0.90869 0.90735 0.76476 0.88754 0.88210 0.73286 0.82600 0.93441 0.93796 0.78094 0.93362 0.91359 0.89127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.12 37.16 0.34 -0.59 16 2 C -0.10 -0.77 3.45 -88.96 -0.31 -1.07 16 3 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 4 C -0.12 -0.83 6.33 -24.74 -0.16 -0.98 16 5 C -0.12 -0.91 6.31 -25.07 -0.16 -1.07 16 6 C -0.11 -0.97 3.30 -90.65 -0.30 -1.27 16 7 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 8 C 0.52 6.25 6.99 -10.98 -0.08 6.17 16 9 O -0.54 -8.32 15.21 5.55 0.08 -8.24 16 10 N -0.72 -8.26 5.50 -61.46 -0.34 -8.59 16 11 C 0.19 2.62 6.10 -5.19 -0.03 2.59 16 12 C 0.32 4.78 7.01 -157.23 -1.10 3.68 16 13 N -0.53 -7.92 10.36 -10.78 -0.11 -8.03 16 14 C 0.35 4.94 7.83 -16.69 -0.13 4.81 16 15 O -0.48 -5.40 13.58 -18.24 -0.25 -5.65 16 16 C -0.22 -3.18 9.79 -39.16 -0.38 -3.57 16 17 C 0.20 3.42 6.18 -82.31 -0.51 2.91 16 18 C 0.20 3.79 6.61 -5.20 -0.03 3.76 16 19 N -0.72 -17.81 5.59 -61.09 -0.34 -18.15 16 20 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 21 H 0.08 1.94 7.83 -52.48 -0.41 1.53 16 22 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 23 N -0.93 -27.74 13.06 55.49 0.72 -27.01 16 24 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 N -0.49 -8.42 10.27 -7.05 -0.07 -8.49 16 29 C -0.11 -1.00 5.97 -25.61 -0.15 -1.16 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.43 8.06 -51.93 -0.42 0.01 16 35 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 36 H 0.07 0.69 7.85 -51.93 -0.41 0.28 16 37 H 0.40 3.99 8.46 -40.82 -0.35 3.65 16 38 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.41 2.66 9.06 45.56 0.41 3.07 16 41 H 0.16 2.00 8.06 -52.48 -0.42 1.58 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.04 0.78 8.06 -51.93 -0.42 0.37 16 44 H 0.39 10.26 7.66 -40.82 -0.31 9.95 16 45 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.07 0.52 7.83 -51.93 -0.41 0.11 16 47 H 0.09 1.01 6.39 -51.93 -0.33 0.68 16 LS Contribution 393.93 15.07 5.94 5.94 Total: -1.00 -33.55 393.93 -9.06 -42.61 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -6.42 Total: 11.67 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: -3.25 Total: 7.06 kcal Atomic # 7 Polarization: -70.14 SS G_CDS: -0.14 Total: -70.28 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -0.16 Total: -13.88 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.55 -9.06 -42.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264583813.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.936 kcal (2) G-P(sol) polarization free energy of solvation -33.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds