Wall clock time and date at job start Tue Mar 31 2020 19:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.43771 * 2 1 4 4 C 1.54892 * 110.59807 * 122.61775 * 2 1 3 5 5 C 1.54888 * 102.74611 * 156.67207 * 4 2 1 6 6 C 1.54265 * 104.19721 * 322.05788 * 5 4 2 7 7 H 1.08997 * 110.07567 * 264.30049 * 6 5 4 8 8 C 1.50703 * 110.02964 * 142.89288 * 6 5 4 9 9 O 1.21285 * 120.00358 * 242.83208 * 8 6 5 10 10 N 1.34781 * 119.99809 * 62.83419 * 8 6 5 11 11 C 1.46505 * 119.99873 * 179.97438 * 10 8 6 12 12 C 1.50704 * 109.47025 * 180.02562 * 11 10 8 13 13 N 1.31792 * 119.09108 * 89.99482 * 12 11 10 14 14 C 1.32800 * 120.71068 * 179.97438 * 13 12 11 15 15 O 1.35516 * 120.50851 * 180.02562 * 14 13 12 16 16 C 1.39416 * 118.97715 * 0.02562 * 14 13 12 17 17 C 1.38189 * 118.35344 * 359.97438 * 16 14 13 18 18 C 1.50698 * 120.41361 * 180.02562 * 17 16 14 19 19 N 1.46493 * 109.47046 * 94.99939 * 18 17 16 20 20 C 1.36940 * 120.00189 * 180.02562 * 19 18 17 21 21 H 1.08004 * 119.99586 * 359.97438 * 20 19 18 22 22 C 1.38808 * 120.00513 * 180.02562 * 20 19 18 23 23 N 1.31624 * 119.99753 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00239 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47151 * 0.02562 * 24 22 20 26 26 H 1.48511 * 109.47070 * 119.99957 * 24 22 20 27 27 H 1.48494 * 109.47328 * 239.99533 * 24 22 20 28 28 N 1.31758 * 119.09117 * 269.73101 * 12 11 10 29 29 C 1.53873 * 106.59997 * 23.61451 * 6 5 4 30 30 H 1.08994 * 109.47453 * 180.70330 * 1 2 3 31 31 H 1.09000 * 109.47081 * 300.70410 * 1 2 3 32 32 H 1.08999 * 109.46805 * 60.69964 * 1 2 3 33 33 H 1.08992 * 110.75663 * 274.99068 * 4 2 1 34 34 H 1.09000 * 110.75339 * 38.36092 * 4 2 1 35 35 H 1.09007 * 110.48520 * 203.37936 * 5 4 2 36 36 H 1.08998 * 110.59686 * 80.79466 * 5 4 2 37 37 H 0.97004 * 120.00142 * 359.97438 * 10 8 6 38 38 H 1.09005 * 109.46866 * 299.99565 * 11 10 8 39 39 H 1.08998 * 109.47345 * 59.99892 * 11 10 8 40 40 H 0.96702 * 114.00308 * 90.00291 * 15 14 13 41 41 H 1.08003 * 120.82289 * 179.97438 * 16 14 13 42 42 H 1.08997 * 109.46772 * 214.99865 * 18 17 16 43 43 H 1.09002 * 109.46794 * 334.99936 * 18 17 16 44 44 H 0.97003 * 120.00499 * 359.97438 * 19 18 17 45 45 H 0.97003 * 119.99948 * 180.02562 * 23 22 20 46 46 H 1.09002 * 110.03017 * 240.71676 * 29 6 5 47 47 H 1.08996 * 110.07624 * 119.30418 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0749 -0.7815 1.2212 5 6 3.4937 -1.1948 0.7571 6 6 3.3184 -1.5370 -0.7368 7 1 3.1732 -2.6102 -0.8603 8 6 4.5282 -1.0873 -1.5148 9 8 4.4153 -0.2402 -2.3754 10 7 5.7356 -1.6266 -1.2543 11 6 6.9116 -1.1898 -2.0110 12 6 8.1260 -1.9415 -1.5301 13 7 8.4439 -3.0824 -2.1080 14 6 9.5074 -3.7711 -1.7103 15 8 9.8308 -4.9436 -2.3078 16 6 10.2861 -3.2691 -0.6685 17 6 9.9159 -2.0692 -0.0915 18 6 10.7245 -1.4838 1.0373 19 7 11.6902 -0.5227 0.4990 20 6 12.5406 0.1397 1.3436 21 1 12.4989 -0.0462 2.4067 22 6 13.4552 1.0508 0.8336 23 7 13.5056 1.2776 -0.4620 24 14 14.6146 1.9548 1.9858 25 1 14.3587 1.5241 3.3838 26 1 16.0196 1.6409 1.6210 27 1 14.3879 3.4177 1.8687 28 7 8.8438 -1.4372 -0.5469 29 6 2.0699 -0.7773 -1.2183 30 1 -0.3634 -1.0275 0.0126 31 1 -0.3633 0.5247 0.8836 32 1 -0.3633 0.5029 -0.8962 33 1 2.1278 -0.1381 2.0993 34 1 1.4627 -1.6608 1.4216 35 1 3.8368 -2.0687 1.3110 36 1 4.1932 -0.3679 0.8796 37 1 5.8260 -2.3039 -0.5658 38 1 6.7567 -1.3907 -3.0711 39 1 7.0630 -0.1207 -1.8621 40 1 10.4248 -4.8486 -3.0649 41 1 11.1572 -3.8048 -0.3209 42 1 10.0590 -0.9774 1.7364 43 1 11.2564 -2.2820 1.5552 44 1 11.7279 -0.3561 -0.4559 45 1 14.1450 1.9140 -0.8184 46 1 1.3184 -1.4819 -1.5745 47 1 2.3382 -0.0835 -2.0149 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264583813.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:03 Heat of formation + Delta-G solvation = -58.474047 kcal Electronic energy + Delta-G solvation = -27892.720985 eV Core-core repulsion = 23881.450288 eV Total energy + Delta-G solvation = -4011.270697 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.46921 -41.21563 -38.88494 -38.51086 -37.16631 -35.97536 -34.66288 -33.24199 -32.69012 -32.07115 -29.88354 -28.75837 -28.22285 -26.03318 -25.25915 -24.18492 -23.12162 -22.66261 -21.22805 -20.50471 -19.90117 -19.44457 -18.83570 -18.48450 -17.58658 -16.89237 -16.71496 -16.52345 -16.44022 -16.14824 -15.74952 -15.45238 -15.43726 -14.95401 -14.91032 -14.50359 -14.34291 -14.13999 -14.01235 -13.76153 -13.55050 -13.18301 -12.97128 -12.81419 -12.80868 -12.65730 -12.20852 -12.08576 -11.97949 -11.82784 -11.72528 -11.66855 -11.53624 -11.49055 -11.33888 -11.04256 -10.99284 -10.57969 -10.44121 -10.29176 -9.09729 -7.98325 -5.29737 -0.42645 -0.23398 1.48957 1.50105 1.55781 1.60121 1.92971 2.08217 2.51070 2.62433 2.73169 3.10736 3.37161 3.48780 3.59081 3.72832 3.79638 3.87505 4.07885 4.09332 4.12875 4.22961 4.34887 4.40437 4.47929 4.54675 4.55598 4.60631 4.72267 4.74234 4.78517 4.87988 4.96442 5.03373 5.09222 5.11019 5.14816 5.18110 5.26664 5.36623 5.46946 5.48292 5.56997 5.79875 6.20700 6.37600 6.44415 6.87087 7.11216 7.28223 7.95148 8.20098 9.25274 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011131 B = 0.002438 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.895787 B =11480.833506 C =13102.449577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.100 4.100 3 H 0.057 0.943 4 C -0.113 4.113 5 C -0.116 4.116 6 C -0.105 4.105 7 H 0.124 0.876 8 C 0.520 3.480 9 O -0.577 6.577 10 N -0.710 5.710 11 C 0.200 3.800 12 C 0.318 3.682 13 N -0.536 5.536 14 C 0.364 3.636 15 O -0.474 6.474 16 C -0.211 4.211 17 C 0.183 3.817 18 C 0.198 3.802 19 N -0.736 5.736 20 C -0.243 4.243 21 H 0.086 0.914 22 C -0.075 4.075 23 N -0.971 5.971 24 Si 0.978 3.022 25 H -0.261 1.261 26 H -0.292 1.292 27 H -0.297 1.297 28 N -0.516 5.516 29 C -0.114 4.114 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.054 0.946 37 H 0.411 0.589 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.430 0.570 41 H 0.176 0.824 42 H 0.044 0.956 43 H 0.067 0.933 44 H 0.372 0.628 45 H 0.251 0.749 46 H 0.084 0.916 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.989 -12.920 0.912 25.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.119 4.119 3 H 0.076 0.924 4 C -0.150 4.150 5 C -0.153 4.153 6 C -0.126 4.126 7 H 0.142 0.858 8 C 0.308 3.692 9 O -0.457 6.457 10 N -0.363 5.363 11 C 0.074 3.926 12 C 0.049 3.951 13 N -0.263 5.263 14 C 0.176 3.824 15 O -0.284 6.284 16 C -0.235 4.235 17 C 0.039 3.961 18 C 0.072 3.928 19 N -0.379 5.379 20 C -0.374 4.374 21 H 0.104 0.896 22 C -0.267 4.267 23 N -0.621 5.621 24 Si 0.806 3.194 25 H -0.185 1.185 26 H -0.220 1.220 27 H -0.224 1.224 28 N -0.233 5.233 29 C -0.152 4.152 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.072 0.928 37 H 0.247 0.753 38 H 0.114 0.886 39 H 0.102 0.898 40 H 0.294 0.706 41 H 0.193 0.807 42 H 0.062 0.938 43 H 0.085 0.915 44 H 0.203 0.797 45 H 0.060 0.940 46 H 0.103 0.897 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -23.054 -12.115 0.566 26.050 hybrid contribution 2.209 0.301 -0.108 2.232 sum -20.845 -11.814 0.458 23.964 Atomic orbital electron populations 1.21765 0.93685 1.02475 1.01808 1.21982 0.96523 0.98700 0.94685 0.92442 1.22562 0.94770 1.00486 0.97203 1.22382 0.98602 1.02142 0.92217 1.22018 0.91497 1.03250 0.95858 0.85776 1.21242 0.84758 0.80407 0.82762 1.90674 1.85867 1.33917 1.35222 1.45755 1.06505 1.43709 1.40302 1.19739 0.79111 0.97186 0.96553 1.22813 0.95638 0.88045 0.88571 1.67765 1.18933 1.08031 1.31536 1.19435 0.88099 0.84712 0.90125 1.84656 1.70391 1.22560 1.50843 1.23081 1.03004 0.97637 0.99752 1.21908 0.89881 0.90049 0.94242 1.19773 0.89580 0.92676 0.90798 1.42342 1.40377 1.48485 1.06682 1.19688 1.10188 1.16346 0.91188 0.89574 1.25632 1.02186 1.01482 0.97417 1.69843 1.40157 1.39555 1.12554 0.85013 0.78099 0.77567 0.78676 1.18481 1.21950 1.22437 1.68116 1.07144 1.35160 1.12866 1.22241 0.95137 0.99312 0.98517 0.91520 0.92136 0.92988 0.90963 0.89412 0.88912 0.92755 0.75344 0.88577 0.89799 0.70604 0.80703 0.93848 0.91535 0.79698 0.93988 0.89721 0.92013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.12 71.98 0.66 -0.95 16 2 C -0.10 -1.49 3.45 -9.72 -0.03 -1.53 16 3 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 4 C -0.11 -1.36 6.33 31.89 0.20 -1.16 16 5 C -0.12 -1.63 6.31 31.67 0.20 -1.43 16 6 C -0.11 -1.70 3.30 -10.82 -0.04 -1.74 16 7 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 8 C 0.52 12.49 6.99 87.66 0.61 13.10 16 9 O -0.58 -18.65 15.21 -3.04 -0.05 -18.70 16 10 N -0.71 -16.13 5.50 -466.75 -2.56 -18.70 16 11 C 0.20 5.46 6.10 85.63 0.52 5.99 16 12 C 0.32 9.52 7.01 138.76 0.97 10.50 16 13 N -0.54 -15.19 10.36 -300.69 -3.12 -18.31 16 14 C 0.36 9.41 7.83 84.83 0.66 10.07 16 15 O -0.47 -9.30 13.58 -88.18 -1.20 -10.50 16 16 C -0.21 -5.79 9.79 22.54 0.22 -5.56 16 17 C 0.18 6.13 6.18 42.44 0.26 6.39 16 18 C 0.20 7.50 6.61 85.63 0.57 8.07 16 19 N -0.74 -36.32 5.59 -347.19 -1.94 -38.26 16 20 C -0.24 -13.06 9.99 84.03 0.84 -12.22 16 21 H 0.09 4.34 7.83 -2.91 -0.02 4.32 16 22 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 23 N -0.97 -58.97 13.06 21.65 0.28 -58.69 16 24 Si 0.98 45.13 29.55 68.60 2.03 47.15 16 25 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 26 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 27 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 28 N -0.52 -17.66 10.27 -176.23 -1.81 -19.47 16 29 C -0.11 -1.95 5.97 31.32 0.19 -1.76 16 30 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.09 0.78 8.06 -2.39 -0.02 0.76 16 35 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.05 0.99 7.85 -2.39 -0.02 0.97 16 37 H 0.41 7.74 8.46 -92.71 -0.78 6.96 16 38 H 0.10 2.58 8.14 -2.38 -0.02 2.56 16 39 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 40 H 0.43 4.26 9.06 -74.06 -0.67 3.59 16 41 H 0.18 4.04 8.06 -2.91 -0.02 4.01 16 42 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.07 2.24 8.06 -2.39 -0.02 2.22 16 44 H 0.37 20.13 7.66 -92.71 -0.71 19.42 16 45 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 46 H 0.08 1.14 7.83 -2.39 -0.02 1.12 16 47 H 0.06 1.44 6.39 -2.39 -0.02 1.42 16 Total: -1.00 -73.02 393.93 -3.21 -76.23 By element: Atomic # 1 Polarization: 36.39 SS G_CDS: -1.15 Total: 35.24 kcal Atomic # 6 Polarization: 17.70 SS G_CDS: 6.30 Total: 24.01 kcal Atomic # 7 Polarization: -144.28 SS G_CDS: -9.15 Total: -153.43 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -1.24 Total: -29.20 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -73.02 -3.21 -76.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264583813.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.755 kcal (2) G-P(sol) polarization free energy of solvation -73.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds