Wall clock time and date at job start Tue Mar 31 2020 19:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.68602 * 2 1 4 4 C 1.53264 * 109.56520 * 239.65633 * 2 1 3 5 5 C 1.53164 * 109.43959 * 189.98612 * 4 2 1 6 6 C 1.53383 * 109.22410 * 69.33697 * 5 4 2 7 7 C 1.51116 * 108.24103 * 311.13339 * 6 5 4 8 8 N 1.30546 * 127.09041 * 196.07954 * 7 6 5 9 9 C 1.33450 * 109.68631 * 179.97438 * 8 7 6 10 10 C 1.36834 * 107.83537 * 0.25191 * 9 8 7 11 11 C 1.46758 * 126.91214 * 180.02562 * 10 9 8 12 12 O 1.21678 * 120.00108 * 158.01540 * 11 10 9 13 13 N 1.34774 * 120.00186 * 338.01272 * 11 10 9 14 14 C 1.46504 * 120.00137 * 184.99617 * 13 11 10 15 15 C 1.53004 * 109.47079 * 176.88438 * 14 13 11 16 16 O 1.42904 * 112.94420 * 46.97081 * 15 14 13 17 17 C 1.53943 * 113.74048 * 275.23764 * 15 14 13 18 18 N 1.47581 * 86.11376 * 222.04905 * 17 15 14 19 19 C 1.36942 * 134.49111 * 204.64352 * 18 17 15 20 20 H 1.07996 * 120.00138 * 180.02562 * 19 18 17 21 21 C 1.38809 * 120.00074 * 359.97438 * 19 18 17 22 22 N 1.31617 * 119.99954 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00368 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47263 * 89.99787 * 23 21 19 25 25 H 1.48500 * 109.47549 * 210.00617 * 23 21 19 26 26 H 1.48508 * 109.46701 * 330.00171 * 23 21 19 27 27 C 1.47577 * 91.01929 * 24.63969 * 18 17 15 28 28 N 1.34879 * 123.91982 * 16.05162 * 7 6 5 29 29 H 1.09002 * 109.46822 * 324.12809 * 1 2 3 30 30 H 1.08999 * 109.46998 * 84.12791 * 1 2 3 31 31 H 1.08994 * 109.47000 * 204.12627 * 1 2 3 32 32 H 1.08996 * 109.47650 * 69.99798 * 4 2 1 33 33 H 1.08997 * 109.48682 * 309.97393 * 4 2 1 34 34 H 1.09006 * 109.51272 * 309.41516 * 5 4 2 35 35 H 1.08997 * 109.55531 * 189.29262 * 5 4 2 36 36 H 1.08998 * 109.70747 * 191.44420 * 6 5 4 37 37 H 1.08996 * 109.70564 * 70.82218 * 6 5 4 38 38 H 1.08005 * 126.08410 * 180.02562 * 9 8 7 39 39 H 0.96999 * 120.00355 * 4.99550 * 13 11 10 40 40 H 1.09003 * 109.47034 * 296.88181 * 14 13 11 41 41 H 1.08994 * 109.47333 * 56.88431 * 14 13 11 42 42 H 0.96700 * 113.99856 * 288.68987 * 16 15 14 43 43 H 1.08998 * 113.76886 * 336.34277 * 17 15 14 44 44 H 1.08996 * 113.76956 * 107.74660 * 17 15 14 45 45 H 0.97000 * 120.00422 * 179.97438 * 22 21 19 46 46 H 1.08999 * 113.77252 * 221.06320 * 27 18 17 47 47 H 1.09004 * 113.77091 * 89.65737 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8972 1.0263 0.0000 4 6 2.0433 -0.7296 -1.2463 5 6 3.5543 -0.9477 -1.1232 6 6 3.8276 -1.9789 -0.0211 7 6 3.0394 -1.5807 1.2052 8 7 3.2117 -2.0107 2.4257 9 6 2.3244 -1.4304 3.2362 10 6 1.5497 -0.5940 2.4794 11 6 0.4453 0.2504 2.9495 12 8 0.1015 1.2199 2.2996 13 7 -0.1882 -0.0481 4.1010 14 6 -1.3597 0.7282 4.5151 15 6 -1.9310 0.1397 5.8067 16 8 -0.9286 -0.1204 6.7915 17 6 -2.8979 -1.0361 5.5774 18 7 -3.7353 -0.4208 6.6253 19 6 -4.6771 -0.8918 7.5009 20 1 -5.1608 -0.2148 8.1893 21 6 -5.0106 -2.2392 7.5028 22 7 -4.4214 -3.0642 6.6635 23 14 -6.2957 -2.8817 8.6967 24 1 -7.6384 -2.8052 8.0670 25 1 -5.9899 -4.2935 9.0407 26 1 -6.2803 -2.0568 9.9315 27 6 -3.1503 0.9060 6.3508 28 7 2.0207 -0.6968 1.1909 29 1 -0.3633 0.8328 0.6022 30 1 -0.3633 0.1051 -1.0223 31 1 -0.3633 -0.9378 0.4200 32 1 1.8338 -0.1287 -2.1312 33 1 1.5431 -1.6939 -1.3350 34 1 4.0387 -0.0051 -0.8680 35 1 3.9484 -1.3146 -2.0709 36 1 4.8918 -1.9922 0.2141 37 1 3.5122 -2.9670 -0.3560 38 1 2.2317 -1.5946 4.2997 39 1 0.1313 -0.7768 4.6557 40 1 -1.0670 1.7642 4.6862 41 1 -2.1168 0.6891 3.7320 42 1 -0.3526 -0.8674 6.5787 43 1 -3.3605 -1.0384 4.5905 44 1 -2.4852 -2.0053 5.8576 45 1 -4.6541 -4.0059 6.6651 46 1 -2.9391 1.4873 7.2483 47 1 -3.6870 1.4741 5.5909 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271289991.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:04 Heat of formation + Delta-G solvation = 36.503032 kcal Electronic energy + Delta-G solvation = -29391.821878 eV Core-core repulsion = 25384.669696 eV Total energy + Delta-G solvation = -4007.152182 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.68393 -39.70225 -38.54154 -37.38652 -34.94314 -34.16568 -33.82472 -32.03145 -30.94264 -30.08737 -28.37580 -27.29887 -25.89220 -25.04632 -23.26973 -23.18039 -22.22107 -21.77368 -20.35259 -19.52346 -19.22154 -18.20444 -16.82459 -16.50715 -16.13114 -15.83555 -15.60741 -15.44371 -15.00333 -14.92386 -14.58574 -14.41823 -14.16847 -13.95836 -13.67850 -13.48861 -13.39716 -13.09712 -12.71340 -12.47791 -12.45362 -12.23430 -11.89051 -11.74815 -11.56323 -11.54299 -11.08025 -11.03838 -10.97029 -10.81687 -10.54030 -10.32480 -9.95122 -9.83312 -9.74225 -9.51666 -9.38939 -8.95866 -8.84277 -8.53235 -6.93787 -5.80739 -3.12748 1.23520 2.26342 2.69111 3.18150 3.28148 3.38183 3.43091 3.45074 3.92652 4.11140 4.21650 4.26412 4.40700 4.46475 4.61946 4.78974 4.84094 4.91855 5.01140 5.03839 5.15416 5.16890 5.25369 5.26804 5.28683 5.36170 5.45271 5.53645 5.55728 5.62205 5.75356 5.77591 5.94411 6.05018 6.09787 6.27894 6.39593 6.40858 6.50754 6.55513 6.89193 6.97844 7.10547 7.40745 7.44702 7.78716 7.92307 8.07161 8.17671 9.00156 9.66585 10.51642 11.36558 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.020525 B = 0.002523 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.850753 B =11093.090157 C =11311.965242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.135 3.865 3 H 0.096 0.904 4 C -0.133 4.133 5 C -0.128 4.128 6 C -0.035 4.035 7 C 0.225 3.775 8 N -0.491 5.491 9 C 0.033 3.967 10 C -0.076 4.076 11 C 0.593 3.407 12 O -0.540 6.540 13 N -0.705 5.705 14 C 0.110 3.890 15 C 0.063 3.937 16 O -0.528 6.528 17 C 0.143 3.857 18 N -0.603 5.603 19 C -0.219 4.219 20 H 0.082 0.918 21 C -0.008 4.008 22 N -0.923 5.923 23 Si 0.914 3.086 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.136 3.864 28 N -0.416 5.416 29 H 0.110 0.890 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.179 0.821 39 H 0.400 0.600 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.366 0.634 43 H 0.035 0.965 44 H 0.078 0.922 45 H 0.254 0.746 46 H 0.056 0.944 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.630 4.411 -17.067 24.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.033 3.967 3 H 0.114 0.886 4 C -0.171 4.171 5 C -0.166 4.166 6 C -0.074 4.074 7 C -0.037 4.037 8 N -0.209 5.209 9 C -0.122 4.122 10 C -0.194 4.194 11 C 0.380 3.620 12 O -0.420 6.420 13 N -0.356 5.356 14 C -0.014 4.014 15 C 0.020 3.980 16 O -0.332 6.332 17 C 0.017 3.983 18 N -0.329 5.329 19 C -0.347 4.347 20 H 0.099 0.901 21 C -0.204 4.204 22 N -0.570 5.570 23 Si 0.744 3.256 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.206 1.206 27 C 0.009 3.991 28 N -0.098 5.098 29 H 0.128 0.872 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.116 0.884 37 H 0.111 0.889 38 H 0.196 0.804 39 H 0.235 0.765 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.213 0.787 43 H 0.052 0.948 44 H 0.097 0.903 45 H 0.064 0.936 46 H 0.075 0.925 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 16.350 4.905 -16.961 24.064 hybrid contribution -1.033 -0.704 0.366 1.303 sum 15.317 4.201 -16.595 22.971 Atomic orbital electron populations 1.22628 0.92204 1.05445 1.03799 1.21667 0.96748 0.96291 0.81980 0.88647 1.22072 0.96276 1.01976 0.96789 1.21727 0.95886 0.99756 0.99201 1.20279 0.99452 0.99708 0.87957 1.23440 0.91551 0.92949 0.95797 1.69920 1.25256 1.26024 0.99719 1.22709 0.94048 0.95614 0.99785 1.20592 1.04409 1.08572 0.85800 1.16700 0.80502 0.83679 0.81156 1.90634 1.66915 1.28482 1.55960 1.45551 1.30888 1.36574 1.22583 1.22068 0.86527 0.95660 0.97153 1.23702 0.88206 1.00069 0.85980 1.86546 1.46424 1.53698 1.46498 1.22953 0.88019 0.95560 0.91757 1.45687 1.46606 1.02166 1.38408 1.19000 1.13113 0.92262 1.10304 0.90070 1.24772 1.00302 0.95887 0.99485 1.69786 1.44970 1.03381 1.38904 0.86088 0.80976 0.78147 0.80363 1.21631 1.21603 1.20561 1.22547 0.88060 0.90552 0.97892 1.45354 1.25122 1.32193 1.07114 0.87217 0.91167 0.92306 0.89100 0.90433 0.91024 0.89723 0.88377 0.88908 0.80351 0.76458 0.91018 0.90189 0.78721 0.94785 0.90344 0.93637 0.92545 0.93273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.95 8.19 37.16 0.30 -1.64 16 2 C 0.14 1.30 3.28 -67.82 -0.22 1.07 16 3 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 4 C -0.13 -0.84 5.13 -26.51 -0.14 -0.97 16 5 C -0.13 -0.68 5.96 -26.45 -0.16 -0.84 16 6 C -0.04 -0.25 6.33 -27.48 -0.17 -0.43 16 7 C 0.22 2.57 7.63 -155.32 -1.19 1.38 16 8 N -0.49 -6.55 11.19 -10.35 -0.12 -6.67 16 9 C 0.03 0.41 11.38 -17.36 -0.20 0.21 16 10 C -0.08 -1.01 6.57 -82.36 -0.54 -1.55 16 11 C 0.59 8.35 7.14 -12.82 -0.09 8.26 16 12 O -0.54 -8.63 13.02 5.21 0.07 -8.56 16 13 N -0.70 -9.26 5.43 -61.59 -0.33 -9.59 16 14 C 0.11 1.64 5.37 -4.04 -0.02 1.62 16 15 C 0.06 1.12 1.55 -89.69 -0.14 0.98 16 16 O -0.53 -9.22 13.28 -35.23 -0.47 -9.69 16 17 C 0.14 3.18 6.91 -2.98 -0.02 3.16 16 18 N -0.60 -15.24 3.70 -177.83 -0.66 -15.90 16 19 C -0.22 -6.14 10.70 -15.06 -0.16 -6.30 16 20 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 21 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 22 N -0.92 -26.94 11.38 55.49 0.63 -26.31 16 23 Si 0.91 22.13 29.55 -169.99 -5.02 17.10 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 C 0.14 2.74 8.34 -2.98 -0.02 2.72 16 28 N -0.42 -4.91 2.97 -102.73 -0.31 -5.22 16 29 H 0.11 1.44 4.87 -51.96 -0.25 1.19 16 30 H 0.07 0.58 7.93 -51.93 -0.41 0.17 16 31 H 0.06 0.71 8.05 -51.93 -0.42 0.29 16 32 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.51 8.09 -51.93 -0.42 0.09 16 34 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 35 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.18 1.75 7.78 -52.48 -0.41 1.35 16 39 H 0.40 4.52 6.44 -40.82 -0.26 4.26 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.08 1.23 7.91 -51.93 -0.41 0.82 16 42 H 0.37 4.92 7.83 45.56 0.36 5.28 16 43 H 0.03 0.78 7.94 -51.93 -0.41 0.36 16 44 H 0.08 1.92 7.15 -51.93 -0.37 1.55 16 45 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 46 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.05 0.91 8.10 -51.93 -0.42 0.49 16 LS Contribution 375.17 15.07 5.65 5.65 Total: -1.00 -34.99 375.17 -9.77 -44.77 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -6.36 Total: 7.07 kcal Atomic # 6 Polarization: 10.20 SS G_CDS: -2.86 Total: 7.34 kcal Atomic # 7 Polarization: -62.90 SS G_CDS: -0.78 Total: -63.69 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.40 Total: -18.25 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.99 -9.77 -44.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271289991.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.270 kcal (2) G-P(sol) polarization free energy of solvation -34.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds