Wall clock time and date at job start Tue Mar 31 2020 19:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.68602 * 2 1 4 4 C 1.53264 * 109.56520 * 239.65633 * 2 1 3 5 5 C 1.53164 * 109.43959 * 189.98612 * 4 2 1 6 6 C 1.53383 * 109.22410 * 69.33697 * 5 4 2 7 7 C 1.51116 * 108.24103 * 311.13339 * 6 5 4 8 8 N 1.30546 * 127.09041 * 196.07954 * 7 6 5 9 9 C 1.33450 * 109.68631 * 179.97438 * 8 7 6 10 10 C 1.36834 * 107.83537 * 0.25191 * 9 8 7 11 11 C 1.46758 * 126.91214 * 180.02562 * 10 9 8 12 12 O 1.21678 * 120.00108 * 158.01540 * 11 10 9 13 13 N 1.34774 * 120.00186 * 338.01272 * 11 10 9 14 14 C 1.46504 * 120.00137 * 184.99617 * 13 11 10 15 15 C 1.53004 * 109.47079 * 176.88438 * 14 13 11 16 16 O 1.42904 * 112.94420 * 46.97081 * 15 14 13 17 17 C 1.53943 * 113.74048 * 275.23764 * 15 14 13 18 18 N 1.47581 * 86.11376 * 222.04905 * 17 15 14 19 19 C 1.36942 * 134.49111 * 204.64352 * 18 17 15 20 20 H 1.07996 * 120.00138 * 180.02562 * 19 18 17 21 21 C 1.38809 * 120.00074 * 359.97438 * 19 18 17 22 22 N 1.31617 * 119.99954 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00368 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47263 * 89.99787 * 23 21 19 25 25 H 1.48500 * 109.47549 * 210.00617 * 23 21 19 26 26 H 1.48508 * 109.46701 * 330.00171 * 23 21 19 27 27 C 1.47577 * 91.01929 * 24.63969 * 18 17 15 28 28 N 1.34879 * 123.91982 * 16.05162 * 7 6 5 29 29 H 1.09002 * 109.46822 * 324.12809 * 1 2 3 30 30 H 1.08999 * 109.46998 * 84.12791 * 1 2 3 31 31 H 1.08994 * 109.47000 * 204.12627 * 1 2 3 32 32 H 1.08996 * 109.47650 * 69.99798 * 4 2 1 33 33 H 1.08997 * 109.48682 * 309.97393 * 4 2 1 34 34 H 1.09006 * 109.51272 * 309.41516 * 5 4 2 35 35 H 1.08997 * 109.55531 * 189.29262 * 5 4 2 36 36 H 1.08998 * 109.70747 * 191.44420 * 6 5 4 37 37 H 1.08996 * 109.70564 * 70.82218 * 6 5 4 38 38 H 1.08005 * 126.08410 * 180.02562 * 9 8 7 39 39 H 0.96999 * 120.00355 * 4.99550 * 13 11 10 40 40 H 1.09003 * 109.47034 * 296.88181 * 14 13 11 41 41 H 1.08994 * 109.47333 * 56.88431 * 14 13 11 42 42 H 0.96700 * 113.99856 * 288.68987 * 16 15 14 43 43 H 1.08998 * 113.76886 * 336.34277 * 17 15 14 44 44 H 1.08996 * 113.76956 * 107.74660 * 17 15 14 45 45 H 0.97000 * 120.00422 * 179.97438 * 22 21 19 46 46 H 1.08999 * 113.77252 * 221.06320 * 27 18 17 47 47 H 1.09004 * 113.77091 * 89.65737 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8972 1.0263 0.0000 4 6 2.0433 -0.7296 -1.2463 5 6 3.5543 -0.9477 -1.1232 6 6 3.8276 -1.9789 -0.0211 7 6 3.0394 -1.5807 1.2052 8 7 3.2117 -2.0107 2.4257 9 6 2.3244 -1.4304 3.2362 10 6 1.5497 -0.5940 2.4794 11 6 0.4453 0.2504 2.9495 12 8 0.1015 1.2199 2.2996 13 7 -0.1882 -0.0481 4.1010 14 6 -1.3597 0.7282 4.5151 15 6 -1.9310 0.1397 5.8067 16 8 -0.9286 -0.1204 6.7915 17 6 -2.8979 -1.0361 5.5774 18 7 -3.7353 -0.4208 6.6253 19 6 -4.6771 -0.8918 7.5009 20 1 -5.1608 -0.2148 8.1893 21 6 -5.0106 -2.2392 7.5028 22 7 -4.4214 -3.0642 6.6635 23 14 -6.2957 -2.8817 8.6967 24 1 -7.6384 -2.8052 8.0670 25 1 -5.9899 -4.2935 9.0407 26 1 -6.2803 -2.0568 9.9315 27 6 -3.1503 0.9060 6.3508 28 7 2.0207 -0.6968 1.1909 29 1 -0.3633 0.8328 0.6022 30 1 -0.3633 0.1051 -1.0223 31 1 -0.3633 -0.9378 0.4200 32 1 1.8338 -0.1287 -2.1312 33 1 1.5431 -1.6939 -1.3350 34 1 4.0387 -0.0051 -0.8680 35 1 3.9484 -1.3146 -2.0709 36 1 4.8918 -1.9922 0.2141 37 1 3.5122 -2.9670 -0.3560 38 1 2.2317 -1.5946 4.2997 39 1 0.1313 -0.7768 4.6557 40 1 -1.0670 1.7642 4.6862 41 1 -2.1168 0.6891 3.7320 42 1 -0.3526 -0.8674 6.5787 43 1 -3.3605 -1.0384 4.5905 44 1 -2.4852 -2.0053 5.8576 45 1 -4.6541 -4.0059 6.6651 46 1 -2.9391 1.4873 7.2483 47 1 -3.6870 1.4741 5.5909 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271289991.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:03 Heat of formation + Delta-G solvation = 10.676717 kcal Electronic energy + Delta-G solvation = -29392.941791 eV Core-core repulsion = 25384.669696 eV Total energy + Delta-G solvation = -4008.272095 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.55933 -41.04039 -39.93194 -38.07632 -36.46645 -35.36334 -34.61547 -34.02214 -31.76978 -31.18759 -29.80167 -28.23436 -27.35167 -26.75144 -24.43389 -23.94237 -23.32968 -22.97420 -21.39922 -20.96240 -20.09239 -19.26014 -18.70962 -17.56214 -17.45609 -17.07608 -16.71207 -16.52742 -16.34119 -15.80208 -15.74304 -15.58727 -15.38296 -15.18536 -14.86253 -14.63348 -14.33636 -14.31810 -13.98569 -13.80375 -13.54953 -13.27418 -13.14118 -12.91669 -12.87227 -12.65575 -12.61525 -12.16432 -12.06983 -12.02094 -11.77481 -11.67087 -11.53752 -11.25553 -11.04792 -10.85603 -10.77622 -10.72001 -10.13281 -9.46073 -8.94454 -7.92478 -5.25154 0.27140 1.36720 1.45213 1.46787 1.55441 1.76191 2.17111 2.23678 2.45644 3.03495 3.24060 3.26919 3.33431 3.48434 3.50228 3.62936 3.65324 3.80132 3.94014 4.05281 4.16044 4.29353 4.33108 4.40473 4.44280 4.59026 4.68383 4.70479 4.74034 4.75980 4.86870 4.90717 4.92343 4.95076 5.05313 5.09118 5.15716 5.18736 5.27823 5.32770 5.44758 5.48925 5.49260 5.90055 6.08044 6.33540 6.78781 6.87495 6.90023 7.08250 7.58021 8.50625 9.23987 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.020525 B = 0.002523 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.850753 B =11093.090157 C =11311.965242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.129 3.871 3 H 0.093 0.907 4 C -0.127 4.127 5 C -0.121 4.121 6 C -0.037 4.037 7 C 0.227 3.773 8 N -0.522 5.522 9 C 0.031 3.969 10 C -0.101 4.101 11 C 0.595 3.405 12 O -0.561 6.561 13 N -0.700 5.700 14 C 0.126 3.874 15 C 0.098 3.902 16 O -0.539 6.539 17 C 0.142 3.858 18 N -0.636 5.636 19 C -0.233 4.233 20 H 0.082 0.918 21 C -0.066 4.066 22 N -0.951 5.951 23 Si 0.979 3.021 24 H -0.286 1.286 25 H -0.293 1.293 26 H -0.270 1.270 27 C 0.130 3.870 28 N -0.421 5.421 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.038 0.962 32 H 0.115 0.885 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.197 0.803 39 H 0.409 0.591 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.385 0.615 43 H 0.026 0.974 44 H 0.051 0.949 45 H 0.248 0.752 46 H 0.059 0.941 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.854 4.813 -18.415 26.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.027 3.973 3 H 0.110 0.890 4 C -0.165 4.165 5 C -0.158 4.158 6 C -0.076 4.076 7 C -0.036 4.036 8 N -0.241 5.241 9 C -0.124 4.124 10 C -0.218 4.218 11 C 0.383 3.617 12 O -0.442 6.442 13 N -0.351 5.351 14 C 0.001 3.999 15 C 0.056 3.944 16 O -0.345 6.345 17 C 0.016 3.984 18 N -0.362 5.362 19 C -0.361 4.361 20 H 0.100 0.900 21 C -0.259 4.259 22 N -0.600 5.600 23 Si 0.807 3.193 24 H -0.213 1.213 25 H -0.220 1.220 26 H -0.195 1.195 27 C 0.005 3.995 28 N -0.102 5.102 29 H 0.102 0.898 30 H 0.112 0.888 31 H 0.057 0.943 32 H 0.133 0.867 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.133 0.867 36 H 0.127 0.873 37 H 0.123 0.877 38 H 0.214 0.786 39 H 0.246 0.754 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.234 0.766 43 H 0.044 0.956 44 H 0.069 0.931 45 H 0.057 0.943 46 H 0.077 0.923 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 17.597 5.332 -18.314 25.952 hybrid contribution -1.365 -0.800 0.765 1.757 sum 16.232 4.532 -17.549 24.331 Atomic orbital electron populations 1.22509 0.93230 1.03062 1.04548 1.21883 0.95961 0.96683 0.82754 0.88951 1.22101 0.96880 1.01844 0.95673 1.21735 0.95081 0.99208 0.99807 1.20558 0.99442 1.00862 0.86749 1.24323 0.91025 0.91686 0.96548 1.69951 1.26151 1.27174 1.00811 1.23104 0.93541 0.94977 1.00746 1.20538 1.04875 1.09474 0.86926 1.16809 0.80553 0.83505 0.80878 1.90638 1.67656 1.29429 1.56496 1.45410 1.30349 1.36671 1.22688 1.21755 0.86977 0.95914 0.95208 1.23119 0.87558 0.96901 0.86861 1.86496 1.46424 1.54771 1.46838 1.22893 0.88982 0.95926 0.90570 1.46060 1.46536 1.04855 1.38742 1.19371 1.13345 0.92649 1.10756 0.89981 1.25588 1.02592 0.96227 1.01481 1.69963 1.46387 1.03159 1.40517 0.85077 0.78441 0.77155 0.78645 1.21338 1.21964 1.19464 1.22792 0.88814 0.89206 0.98710 1.45578 1.25157 1.32310 1.07181 0.89807 0.88763 0.94314 0.86652 0.90569 0.91204 0.86696 0.87267 0.87652 0.78573 0.75410 0.90047 0.90528 0.76582 0.95613 0.93073 0.94266 0.92307 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.68 8.19 71.98 0.59 -3.09 16 2 C 0.13 2.32 3.28 45.09 0.15 2.47 16 3 H 0.09 1.71 8.14 -2.39 -0.02 1.70 16 4 C -0.13 -1.26 5.13 30.74 0.16 -1.10 16 5 C -0.12 -0.90 5.96 30.78 0.18 -0.72 16 6 C -0.04 -0.45 6.33 30.11 0.19 -0.26 16 7 C 0.23 4.92 7.63 138.30 1.06 5.97 16 8 N -0.52 -13.61 11.19 -186.67 -2.09 -15.70 16 9 C 0.03 0.76 11.38 84.12 0.96 1.72 16 10 C -0.10 -2.65 6.57 40.14 0.26 -2.39 16 11 C 0.59 16.72 7.14 86.47 0.62 17.34 16 12 O -0.56 -17.99 13.02 -4.28 -0.06 -18.04 16 13 N -0.70 -18.05 5.43 -467.00 -2.54 -20.59 16 14 C 0.13 3.64 5.37 86.38 0.46 4.11 16 15 C 0.10 3.44 1.55 -10.13 -0.02 3.42 16 16 O -0.54 -18.31 13.28 -148.98 -1.98 -20.28 16 17 C 0.14 6.42 6.91 86.48 0.60 7.02 16 18 N -0.64 -32.41 3.70 -720.37 -2.66 -35.07 16 19 C -0.23 -13.17 10.70 84.03 0.90 -12.27 16 20 H 0.08 4.47 7.83 -2.91 -0.02 4.44 16 21 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 22 N -0.95 -56.78 11.38 21.65 0.25 -56.54 16 23 Si 0.98 45.96 29.55 68.60 2.03 47.99 16 24 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 25 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 26 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 27 C 0.13 5.16 8.34 86.48 0.72 5.88 16 28 N -0.42 -9.68 2.97 -478.92 -1.42 -11.10 16 29 H 0.08 2.23 4.87 -2.86 -0.01 2.22 16 30 H 0.09 1.43 7.93 -2.39 -0.02 1.41 16 31 H 0.04 0.94 8.05 -2.39 -0.02 0.92 16 32 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.08 0.81 8.09 -2.39 -0.02 0.79 16 34 H 0.07 0.59 8.12 -2.38 -0.02 0.57 16 35 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 36 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.20 3.76 7.78 -2.91 -0.02 3.74 16 39 H 0.41 9.03 6.44 -92.71 -0.60 8.43 16 40 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.08 2.31 7.91 -2.39 -0.02 2.29 16 42 H 0.38 9.99 7.83 -74.06 -0.58 9.41 16 43 H 0.03 1.21 7.94 -2.39 -0.02 1.19 16 44 H 0.05 2.58 7.15 -2.39 -0.02 2.56 16 45 H 0.25 14.45 8.31 -92.71 -0.77 13.67 16 46 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 47 H 0.07 2.56 8.10 -2.38 -0.02 2.54 16 Total: -1.00 -76.82 375.17 -1.35 -78.17 By element: Atomic # 1 Polarization: 26.51 SS G_CDS: -0.17 Total: 26.34 kcal Atomic # 6 Polarization: 17.52 SS G_CDS: 7.30 Total: 24.82 kcal Atomic # 7 Polarization: -130.53 SS G_CDS: -8.47 Total: -139.00 kcal Atomic # 8 Polarization: -36.29 SS G_CDS: -2.03 Total: -38.32 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -76.82 -1.35 -78.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271289991.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.848 kcal (2) G-P(sol) polarization free energy of solvation -76.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds