Wall clock time and date at job start Tue Mar 31 2020 19:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.42527 * 2 1 4 4 C 1.53021 * 109.43346 * 119.90280 * 2 1 3 5 5 C 1.53365 * 109.75106 * 191.75141 * 4 2 1 6 6 C 1.50948 * 108.20291 * 309.34805 * 5 4 2 7 7 N 1.30129 * 128.28880 * 196.66500 * 6 5 4 8 8 N 1.40309 * 108.12813 * 179.85725 * 7 6 5 9 9 H 0.97001 * 126.00642 * 180.02562 * 8 7 6 10 10 C 1.35201 * 107.99184 * 0.03643 * 8 7 6 11 11 C 1.34574 * 107.61721 * 0.04243 * 10 8 7 12 12 C 1.50763 * 128.34496 * 179.74636 * 11 10 8 13 13 H 1.09001 * 109.65490 * 316.41260 * 12 11 10 14 14 C 1.50694 * 109.72590 * 77.02985 * 12 11 10 15 15 O 1.21280 * 120.00206 * 32.54590 * 14 12 11 16 16 N 1.34782 * 120.00105 * 212.55224 * 14 12 11 17 17 C 1.46500 * 120.00194 * 179.97438 * 16 14 12 18 18 C 1.53001 * 109.47051 * 179.97438 * 17 16 14 19 19 O 1.42898 * 112.94212 * 55.33645 * 18 17 16 20 20 C 1.53951 * 113.74123 * 283.74300 * 18 17 16 21 21 N 1.47816 * 86.03328 * 222.08510 * 20 18 17 22 22 C 1.36938 * 134.45297 * 204.64567 * 21 20 18 23 23 H 1.08000 * 119.99751 * 179.87007 * 22 21 20 24 24 C 1.38809 * 120.00215 * 359.86438 * 22 21 20 25 25 N 1.31618 * 119.99917 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00126 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.47274 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.47313 * 120.00109 * 26 24 22 29 29 H 1.48501 * 109.47575 * 240.00229 * 26 24 22 30 30 C 1.47577 * 91.05114 * 24.55167 * 21 20 18 31 31 H 1.08997 * 109.46743 * 305.97760 * 1 2 3 32 32 H 1.08995 * 109.47367 * 65.98683 * 1 2 3 33 33 H 1.09005 * 109.46732 * 185.98667 * 1 2 3 34 34 H 1.08999 * 109.42196 * 311.83923 * 4 2 1 35 35 H 1.09004 * 109.42626 * 71.66301 * 4 2 1 36 36 H 1.08997 * 109.71708 * 69.02502 * 5 4 2 37 37 H 1.08999 * 109.71935 * 189.63369 * 5 4 2 38 38 H 1.07997 * 126.19171 * 180.02562 * 10 8 7 39 39 H 0.96999 * 119.99648 * 359.97438 * 16 14 12 40 40 H 1.08998 * 109.47208 * 300.00154 * 17 16 14 41 41 H 1.08999 * 109.46557 * 60.00135 * 17 16 14 42 42 H 0.96699 * 114.00128 * 309.66278 * 19 18 17 43 43 H 1.08995 * 113.76725 * 336.34890 * 20 18 17 44 44 H 1.09000 * 113.76442 * 107.74802 * 20 18 17 45 45 H 0.96998 * 120.00103 * 179.97438 * 25 24 22 46 46 H 1.09004 * 113.77071 * 221.15130 * 30 21 20 47 47 H 1.08998 * 113.77115 * 89.75744 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8926 1.0280 0.0000 4 6 2.0392 -0.7194 1.2509 5 6 3.5443 -0.4738 1.4136 6 6 4.2190 -0.7955 0.1022 7 7 5.4823 -1.0114 -0.1230 8 7 5.6431 -1.2745 -1.4918 9 1 6.4805 -1.4706 -1.9403 10 6 4.4257 -1.2066 -2.0759 11 6 3.5295 -0.9113 -1.1164 12 6 2.0402 -0.7210 -1.2541 13 1 1.8278 -0.1181 -2.1370 14 6 1.3655 -2.0626 -1.3792 15 8 1.8257 -3.0285 -0.8082 16 7 0.2505 -2.1892 -2.1258 17 6 -0.4052 -3.4936 -2.2478 18 6 -1.6390 -3.3624 -3.1431 19 8 -1.3400 -2.8087 -4.4260 20 6 -2.8421 -2.7003 -2.4472 21 7 -3.6637 -3.7360 -3.1085 22 6 -4.9778 -3.8226 -3.4839 23 1 -5.3432 -4.7160 -3.9684 24 6 -5.8402 -2.7622 -3.2417 25 7 -5.3948 -1.6733 -2.6516 26 14 -7.6325 -2.8801 -3.7545 27 1 -7.8789 -4.1977 -4.3938 28 1 -8.5001 -2.7415 -2.5572 29 1 -7.9438 -1.7952 -4.7195 30 6 -2.4993 -4.6376 -3.2036 31 1 -0.3633 0.6037 0.8316 32 1 -0.3634 0.4182 -0.9387 33 1 -0.3633 -1.0221 0.1072 34 1 1.5131 -0.3396 2.1268 35 1 1.8548 -1.7894 1.1541 36 1 3.7207 0.5704 1.6714 37 1 3.9393 -1.1183 2.1988 38 1 4.2113 -1.3610 -3.1230 39 1 -0.1178 -1.4166 -2.5822 40 1 0.2890 -4.2095 -2.6879 41 1 -0.7086 -3.8415 -1.2604 42 1 -0.8246 -1.9912 -4.3911 43 1 -2.8215 -2.7833 -1.3607 44 1 -3.0473 -1.6875 -2.7940 45 1 -5.9973 -0.9322 -2.4827 46 1 -2.4313 -5.1688 -4.1530 47 1 -2.3778 -5.2910 -2.3396 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271319832.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:13 Heat of formation + Delta-G solvation = 12.469251 kcal Electronic energy + Delta-G solvation = -29728.523225 eV Core-core repulsion = 25720.328860 eV Total energy + Delta-G solvation = -4008.194365 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.59080 -41.06430 -40.09446 -37.61368 -36.41404 -35.19283 -33.99653 -33.55105 -32.01786 -30.69772 -30.09799 -28.13922 -27.05590 -26.65423 -24.84175 -23.84408 -22.59477 -21.67637 -21.37783 -20.92001 -19.94209 -18.94843 -18.66134 -17.82516 -17.37754 -17.11203 -16.69977 -16.24770 -15.86070 -15.78118 -15.60146 -15.36083 -15.05749 -14.89622 -14.63954 -14.37190 -14.19973 -13.94328 -13.82229 -13.78499 -13.48229 -13.32968 -12.93083 -12.87688 -12.83885 -12.51617 -12.36599 -12.16283 -12.05722 -11.83719 -11.74116 -11.61383 -11.36031 -11.12637 -10.95298 -10.67867 -10.66066 -10.29172 -10.01192 -9.39158 -8.90388 -7.88971 -5.21042 0.99308 1.47068 1.47499 1.57599 1.66595 1.77840 2.03396 2.36929 2.48149 3.10005 3.30977 3.38586 3.45864 3.63372 3.80066 3.89345 3.93600 3.96588 4.12707 4.28688 4.35877 4.43076 4.57230 4.58609 4.66485 4.70322 4.71349 4.81991 4.82537 4.91365 4.97549 4.99888 5.02988 5.10232 5.20512 5.21324 5.27624 5.36306 5.42549 5.45020 5.53228 5.57020 5.71077 5.94920 6.49482 6.61129 6.76134 6.89539 6.94526 7.36475 7.61315 8.55060 9.27638 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022964 B = 0.002701 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.010256 B =10362.371440 C =11005.590855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.070 4.070 3 H 0.105 0.895 4 C -0.117 4.117 5 C -0.037 4.037 6 C 0.083 3.917 7 N -0.329 5.329 8 N -0.479 5.479 9 H 0.451 0.549 10 C 0.078 3.922 11 C -0.239 4.239 12 C -0.017 4.017 13 H 0.125 0.875 14 C 0.527 3.473 15 O -0.574 6.574 16 N -0.716 5.716 17 C 0.121 3.879 18 C 0.101 3.899 19 O -0.540 6.540 20 C 0.147 3.853 21 N -0.636 5.636 22 C -0.234 4.234 23 H 0.079 0.921 24 C -0.064 4.064 25 N -0.948 5.948 26 Si 0.977 3.023 27 H -0.269 1.269 28 H -0.292 1.292 29 H -0.290 1.290 30 C 0.127 3.873 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.036 0.964 34 H 0.088 0.912 35 H 0.048 0.952 36 H 0.103 0.897 37 H 0.077 0.923 38 H 0.207 0.793 39 H 0.409 0.591 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.384 0.616 43 H 0.025 0.975 44 H 0.052 0.948 45 H 0.249 0.751 46 H 0.056 0.944 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.860 6.824 2.680 22.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.089 4.089 3 H 0.123 0.877 4 C -0.155 4.155 5 C -0.076 4.076 6 C -0.085 4.085 7 N -0.152 5.152 8 N -0.188 5.188 9 H 0.297 0.703 10 C -0.069 4.069 11 C -0.251 4.251 12 C -0.039 4.039 13 H 0.143 0.857 14 C 0.315 3.685 15 O -0.452 6.452 16 N -0.369 5.369 17 C -0.005 4.005 18 C 0.058 3.942 19 O -0.347 6.347 20 C 0.022 3.978 21 N -0.363 5.363 22 C -0.362 4.362 23 H 0.097 0.903 24 C -0.257 4.257 25 N -0.597 5.597 26 Si 0.805 3.195 27 H -0.194 1.194 28 H -0.219 1.219 29 H -0.217 1.217 30 C 0.001 3.999 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.055 0.945 34 H 0.107 0.893 35 H 0.067 0.933 36 H 0.121 0.879 37 H 0.096 0.904 38 H 0.224 0.776 39 H 0.246 0.754 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.233 0.767 43 H 0.043 0.957 44 H 0.071 0.929 45 H 0.058 0.942 46 H 0.074 0.926 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 21.692 5.606 3.325 22.650 hybrid contribution -1.412 0.349 -0.712 1.620 sum 20.279 5.955 2.613 21.297 Atomic orbital electron populations 1.21963 0.94251 1.01503 1.03480 1.21094 0.95584 1.00106 0.92067 0.87676 1.21697 0.94325 1.00768 0.98748 1.20181 0.93880 1.03027 0.90492 1.22661 0.90574 0.97717 0.97589 1.76919 1.19036 1.24887 0.94337 1.46306 1.09370 1.57494 1.05619 0.70274 1.22578 0.85026 0.98661 1.00610 1.19622 0.95467 1.16993 0.93040 1.19756 0.89452 0.92596 1.02101 0.85697 1.20980 0.79450 0.91085 0.77027 1.90669 1.65438 1.41912 1.47212 1.45937 1.27635 1.11665 1.51667 1.21626 0.93137 0.86315 0.99384 1.23081 0.91196 0.96188 0.83696 1.86567 1.76755 1.44443 1.26918 1.22845 0.86363 0.94687 0.93940 1.46109 1.05499 1.16184 1.68480 1.19382 0.84481 1.00768 1.31570 0.90299 1.25547 1.02135 0.96300 1.01732 1.69962 1.35196 1.06068 1.48438 0.85039 0.79822 0.77553 0.77066 1.19370 1.21877 1.21739 1.22789 0.84403 0.92663 1.00011 0.91139 0.91045 0.94483 0.89323 0.93310 0.87909 0.90436 0.77599 0.75414 0.90714 0.91519 0.76686 0.95700 0.92918 0.94229 0.92621 0.91429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 8.39 71.98 0.60 -2.16 16 2 C -0.07 -1.14 2.44 -10.65 -0.03 -1.17 16 3 H 0.11 1.33 8.10 -2.39 -0.02 1.32 16 4 C -0.12 -2.23 5.14 30.72 0.16 -2.07 16 5 C -0.04 -0.68 6.31 30.05 0.19 -0.49 16 6 C 0.08 1.89 7.10 43.44 0.31 2.19 16 7 N -0.33 -7.91 12.68 -47.13 -0.60 -8.51 16 8 N -0.48 -8.34 7.37 -57.88 -0.43 -8.77 16 9 H 0.45 4.75 8.96 -213.18 -1.91 2.84 16 10 C 0.08 1.29 11.95 83.33 1.00 2.28 16 11 C -0.24 -4.85 4.64 -20.13 -0.09 -4.94 16 12 C -0.02 -0.30 2.66 -12.14 -0.03 -0.33 16 13 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 14 C 0.53 12.64 5.14 87.65 0.45 13.09 16 15 O -0.57 -18.83 15.12 -3.03 -0.05 -18.87 16 16 N -0.72 -15.97 4.74 -463.06 -2.20 -18.16 16 17 C 0.12 3.38 5.26 86.38 0.45 3.84 16 18 C 0.10 3.47 1.49 -10.13 -0.02 3.45 16 19 O -0.54 -17.94 13.50 -148.98 -2.01 -19.95 16 20 C 0.15 6.54 6.93 86.44 0.60 7.14 16 21 N -0.64 -32.47 3.70 -719.59 -2.67 -35.13 16 22 C -0.23 -13.22 10.70 84.03 0.90 -12.32 16 23 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 24 C -0.06 -3.62 5.50 84.86 0.47 -3.16 16 25 N -0.95 -55.66 11.39 21.65 0.25 -55.42 16 26 Si 0.98 45.64 29.55 68.60 2.03 47.67 16 27 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 28 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 29 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 30 C 0.13 5.08 8.34 86.49 0.72 5.80 16 31 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.04 0.85 7.05 -2.38 -0.02 0.83 16 34 H 0.09 1.38 8.09 -2.39 -0.02 1.36 16 35 H 0.05 1.26 6.34 -2.39 -0.02 1.25 16 36 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.21 1.82 8.06 -2.91 -0.02 1.80 16 39 H 0.41 7.31 7.42 -92.71 -0.69 6.62 16 40 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.07 2.05 8.09 -2.39 -0.02 2.03 16 42 H 0.38 8.81 7.73 -74.06 -0.57 8.24 16 43 H 0.03 1.15 8.06 -2.39 -0.02 1.13 16 44 H 0.05 2.60 7.16 -2.39 -0.02 2.58 16 45 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 46 H 0.06 2.20 8.14 -2.38 -0.02 2.19 16 47 H 0.07 2.47 8.10 -2.39 -0.02 2.45 16 Total: -1.00 -79.83 377.65 -2.14 -81.97 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: -2.15 Total: 24.00 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: 5.68 Total: 11.17 kcal Atomic # 7 Polarization: -120.35 SS G_CDS: -5.64 Total: -125.99 kcal Atomic # 8 Polarization: -36.76 SS G_CDS: -2.06 Total: -38.82 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -79.83 -2.14 -81.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271319832.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.441 kcal (2) G-P(sol) polarization free energy of solvation -79.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds