Wall clock time and date at job start Tue Mar 31 2020 19:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.38781 * 2 1 4 4 C 1.53028 * 109.43335 * 119.87177 * 2 1 3 5 5 C 1.53368 * 109.74862 * 191.80697 * 4 2 1 6 6 C 1.50943 * 108.20966 * 309.35254 * 5 4 2 7 7 N 1.30127 * 128.28808 * 196.97997 * 6 5 4 8 8 N 1.40315 * 108.12261 * 179.97438 * 7 6 5 9 9 H 0.97001 * 126.00562 * 179.91694 * 8 7 6 10 10 C 1.35201 * 107.99116 * 359.64600 * 8 7 6 11 11 C 1.34570 * 107.62016 * 0.25958 * 10 8 7 12 12 C 1.50880 * 128.32344 * 179.73481 * 11 10 8 13 13 H 1.09000 * 109.72007 * 77.05527 * 12 11 10 14 14 C 1.50699 * 109.72070 * 316.39957 * 12 11 10 15 15 O 1.21283 * 120.00228 * 240.00259 * 14 12 11 16 16 N 1.34778 * 119.99587 * 60.00742 * 14 12 11 17 17 C 1.46498 * 119.99701 * 180.02562 * 16 14 12 18 18 C 1.53001 * 109.47097 * 179.97438 * 17 16 14 19 19 O 1.42904 * 112.93954 * 53.41348 * 18 17 16 20 20 C 1.53938 * 113.74664 * 281.67448 * 18 17 16 21 21 N 1.47577 * 86.11864 * 222.04699 * 20 18 17 22 22 C 1.36937 * 134.49235 * 204.64438 * 21 20 18 23 23 H 1.07995 * 120.00171 * 180.02562 * 22 21 20 24 24 C 1.38812 * 119.99966 * 359.97438 * 22 21 20 25 25 N 1.31624 * 120.00306 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00096 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.46917 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47417 * 120.00220 * 26 24 22 29 29 H 1.48503 * 109.46969 * 240.00093 * 26 24 22 30 30 C 1.47578 * 91.01330 * 24.64026 * 21 20 18 31 31 H 1.08999 * 109.47708 * 300.12772 * 1 2 3 32 32 H 1.08999 * 109.47360 * 60.13112 * 1 2 3 33 33 H 1.09006 * 109.46993 * 180.12484 * 1 2 3 34 34 H 1.08999 * 109.42271 * 71.71741 * 4 2 1 35 35 H 1.09005 * 109.42332 * 311.89513 * 4 2 1 36 36 H 1.09001 * 109.71425 * 189.67193 * 5 4 2 37 37 H 1.09001 * 109.71373 * 69.03858 * 5 4 2 38 38 H 1.07999 * 126.18989 * 180.28153 * 10 8 7 39 39 H 0.96998 * 120.00088 * 359.97438 * 16 14 12 40 40 H 1.08996 * 109.47187 * 299.99880 * 17 16 14 41 41 H 1.09008 * 109.47139 * 59.99600 * 17 16 14 42 42 H 0.96701 * 113.99873 * 309.66092 * 19 18 17 43 43 H 1.09006 * 113.76749 * 336.35181 * 20 18 17 44 44 H 1.09004 * 113.77146 * 107.74347 * 20 18 17 45 45 H 0.96994 * 120.00544 * 179.97438 * 25 24 22 46 46 H 1.08998 * 113.76533 * 221.05532 * 30 21 20 47 47 H 1.08999 * 113.77040 * 89.66445 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8918 1.0282 0.0000 4 6 2.0391 -0.7187 1.2514 5 6 3.5440 -0.4719 1.4146 6 6 4.2196 -0.7932 0.1036 7 7 5.4824 -1.0135 -0.1199 8 7 5.6448 -1.2714 -1.4895 9 1 6.4825 -1.4677 -1.9375 10 6 4.4276 -1.2043 -2.0742 11 6 3.5307 -0.9098 -1.1152 12 6 2.0403 -0.7203 -1.2544 13 1 1.5530 -1.6911 -1.3451 14 6 1.7455 0.1135 -2.4746 15 8 1.1616 1.1704 -2.3603 16 7 2.1306 -0.3154 -3.6929 17 6 1.8445 0.4955 -4.8790 18 6 2.3841 -0.2129 -6.1232 19 8 1.9162 -1.5576 -6.2455 20 6 3.9046 -0.0635 -6.3111 21 7 3.6062 0.1461 -7.7411 22 6 4.3103 -0.0235 -8.9033 23 1 3.8506 0.2101 -9.8522 24 6 5.6153 -0.4947 -8.8617 25 7 6.1759 -0.7789 -7.7052 26 14 6.5761 -0.7254 -10.4470 27 1 5.7262 -0.3382 -11.6016 28 1 7.7912 0.1276 -10.4181 29 1 6.9742 -2.1497 -10.5817 30 6 2.2442 0.6119 -7.4155 31 1 -0.3634 0.5158 0.8888 32 1 -0.3634 0.5118 -0.8911 33 1 -0.3633 -1.0277 0.0022 34 1 1.8556 -1.7888 1.1547 35 1 1.5123 -0.3392 2.1270 36 1 3.9393 -1.1164 2.1997 37 1 3.7194 0.5725 1.6725 38 1 4.2137 -1.3593 -3.1214 39 1 2.5979 -1.1605 -3.7842 40 1 0.7673 0.6303 -4.9757 41 1 2.3249 1.4688 -4.7783 42 1 2.0293 -2.0877 -5.4447 43 1 4.3244 0.8126 -5.8168 44 1 4.4642 -0.9768 -6.1084 45 1 7.0877 -1.1085 -7.6762 46 1 1.4781 0.2380 -8.0947 47 1 2.1762 1.6864 -7.2458 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271319833.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:17 Heat of formation + Delta-G solvation = 41.199441 kcal Electronic energy + Delta-G solvation = -29876.146653 eV Core-core repulsion = 25869.198123 eV Total energy + Delta-G solvation = -4006.948530 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.81017 -39.88683 -38.79135 -36.92162 -34.95854 -34.09950 -32.77146 -32.05622 -31.28103 -29.74543 -28.60123 -26.92492 -25.79191 -25.04614 -24.15223 -22.32901 -21.36644 -20.96436 -20.51145 -19.38891 -19.00985 -17.88964 -17.53084 -16.75865 -16.09701 -15.68982 -15.42745 -15.10854 -14.89424 -14.68993 -14.38214 -14.10900 -14.02215 -13.76973 -13.53821 -13.41090 -13.00295 -12.85748 -12.73062 -12.37198 -12.29974 -12.15171 -11.77162 -11.71436 -11.23320 -11.13033 -11.06611 -10.99630 -10.82240 -10.75331 -10.64711 -10.43791 -9.99545 -9.70983 -9.55080 -9.51186 -9.27994 -8.94865 -8.88961 -8.57253 -6.96477 -5.84817 -3.15672 1.77942 2.44141 2.68956 2.83493 3.22398 3.34805 3.40605 3.42641 4.21001 4.37602 4.45040 4.52228 4.56752 4.64225 4.80409 4.97632 5.07063 5.11628 5.16523 5.22574 5.25627 5.28057 5.41265 5.48881 5.52854 5.60003 5.67744 5.72157 5.75124 5.82431 5.88074 5.98530 6.03110 6.23359 6.27492 6.29038 6.38168 6.46458 6.49264 6.52155 6.92374 7.06235 7.17075 7.42046 7.46276 7.55150 7.89171 8.04843 8.25504 8.97087 9.63444 10.49046 11.32852 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016165 B = 0.003233 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.679147 B = 8659.420891 C =10042.095969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.069 4.069 3 H 0.082 0.918 4 C -0.110 4.110 5 C -0.040 4.040 6 C 0.090 3.910 7 N -0.289 5.289 8 N -0.475 5.475 9 H 0.444 0.556 10 C 0.078 3.922 11 C -0.240 4.240 12 C -0.020 4.020 13 H 0.102 0.898 14 C 0.524 3.476 15 O -0.534 6.534 16 N -0.727 5.727 17 C 0.102 3.898 18 C 0.063 3.937 19 O -0.525 6.525 20 C 0.144 3.856 21 N -0.602 5.602 22 C -0.216 4.216 23 H 0.082 0.918 24 C -0.009 4.009 25 N -0.924 5.924 26 Si 0.913 3.087 27 H -0.279 1.279 28 H -0.291 1.291 29 H -0.290 1.290 30 C 0.135 3.865 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.050 0.950 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.175 0.825 39 H 0.393 0.607 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.360 0.640 43 H 0.033 0.967 44 H 0.076 0.924 45 H 0.252 0.748 46 H 0.056 0.944 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.335 -2.389 18.639 20.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.088 4.088 3 H 0.101 0.899 4 C -0.148 4.148 5 C -0.079 4.079 6 C -0.079 4.079 7 N -0.111 5.111 8 N -0.182 5.182 9 H 0.289 0.711 10 C -0.070 4.070 11 C -0.253 4.253 12 C -0.043 4.043 13 H 0.120 0.880 14 C 0.310 3.690 15 O -0.410 6.410 16 N -0.381 5.381 17 C -0.023 4.023 18 C 0.020 3.980 19 O -0.329 6.329 20 C 0.018 3.982 21 N -0.327 5.327 22 C -0.344 4.344 23 H 0.100 0.900 24 C -0.205 4.205 25 N -0.572 5.572 26 Si 0.744 3.256 27 H -0.204 1.204 28 H -0.218 1.218 29 H -0.217 1.217 30 C 0.009 3.991 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.192 0.808 39 H 0.229 0.771 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.206 0.794 43 H 0.051 0.949 44 H 0.094 0.906 45 H 0.062 0.938 46 H 0.074 0.926 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.461 -1.573 18.364 19.884 hybrid contribution 0.871 -0.722 -1.214 1.659 sum -6.591 -2.295 17.150 18.516 Atomic orbital electron populations 1.21904 0.94409 1.01487 1.02949 1.20951 0.96056 1.00027 0.91783 0.89927 1.21658 0.94017 1.01206 0.97946 1.20155 0.94174 1.02448 0.91136 1.22277 0.90522 0.98677 0.96444 1.77014 1.18055 1.23095 0.92935 1.46353 1.08784 1.57093 1.05992 0.71124 1.22196 0.85635 0.99998 0.99147 1.19604 0.95303 1.17144 0.93201 1.19773 0.91481 0.99446 0.93560 0.88026 1.20506 0.77993 0.86366 0.84104 1.90671 1.41148 1.23125 1.86103 1.46117 1.60248 1.24816 1.06871 1.22045 1.01244 0.95354 0.83616 1.23760 0.97384 0.83343 0.93522 1.86637 1.84759 1.21959 1.39497 1.22890 0.90083 0.99988 0.85238 1.45653 1.10052 1.75149 1.01867 1.19061 0.94384 1.36962 0.83970 0.90031 1.24746 0.96791 1.01765 0.97152 1.69795 1.13908 1.50649 1.22861 0.86018 0.79830 0.77452 0.82311 1.20401 1.21774 1.21691 1.22559 0.90090 0.95148 0.91317 0.92636 0.91027 0.93123 0.91358 0.90579 0.89904 0.89714 0.80797 0.77116 0.91046 0.90335 0.79379 0.94912 0.90574 0.93832 0.92597 0.93187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.95 37.16 0.33 -1.02 16 2 C -0.07 -0.66 1.77 -90.41 -0.16 -0.82 16 3 H 0.08 0.95 7.77 -51.93 -0.40 0.55 16 4 C -0.11 -0.82 5.18 -26.53 -0.14 -0.96 16 5 C -0.04 -0.34 6.31 -27.57 -0.17 -0.52 16 6 C 0.09 1.04 7.10 -82.35 -0.58 0.46 16 7 N -0.29 -3.74 12.68 33.75 0.43 -3.32 16 8 N -0.47 -5.45 7.37 30.35 0.22 -5.23 16 9 H 0.44 4.15 8.96 -182.43 -1.64 2.51 16 10 C 0.08 0.87 10.99 -17.36 -0.19 0.68 16 11 C -0.24 -2.71 5.41 -104.98 -0.57 -3.27 16 12 C -0.02 -0.21 2.33 -92.63 -0.22 -0.42 16 13 H 0.10 0.86 8.13 -51.93 -0.42 0.44 16 14 C 0.52 6.73 6.84 -10.99 -0.08 6.65 16 15 O -0.53 -8.55 14.25 5.55 0.08 -8.47 16 16 N -0.73 -8.76 4.75 -60.29 -0.29 -9.05 16 17 C 0.10 1.48 5.28 -4.04 -0.02 1.45 16 18 C 0.06 1.09 1.52 -89.70 -0.14 0.95 16 19 O -0.53 -9.03 13.51 -35.23 -0.48 -9.51 16 20 C 0.14 3.12 6.92 -2.98 -0.02 3.10 16 21 N -0.60 -15.05 3.70 -177.83 -0.66 -15.71 16 22 C -0.22 -6.01 10.70 -15.06 -0.16 -6.17 16 23 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 24 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 25 N -0.92 -26.39 11.38 55.49 0.63 -25.76 16 26 Si 0.91 21.92 29.55 -169.99 -5.02 16.89 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 28 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 29 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 30 C 0.14 2.72 8.34 -2.98 -0.02 2.69 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.81 6.35 -51.93 -0.33 0.48 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 35 H 0.08 0.45 8.09 -51.93 -0.42 0.03 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.18 1.72 5.93 -52.49 -0.31 1.41 16 39 H 0.39 3.97 4.98 -40.82 -0.20 3.77 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.08 1.22 8.04 -51.92 -0.42 0.81 16 42 H 0.36 4.50 7.61 45.56 0.35 4.85 16 43 H 0.03 0.73 8.03 -51.93 -0.42 0.32 16 44 H 0.08 1.79 7.15 -51.93 -0.37 1.42 16 45 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 46 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 47 H 0.05 0.93 8.10 -51.93 -0.42 0.51 16 LS Contribution 373.89 15.07 5.63 5.63 Total: -1.00 -34.86 373.89 -9.19 -44.05 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -7.51 Total: 8.00 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -2.23 Total: 2.47 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: 0.34 Total: -59.06 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.40 Total: -17.98 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.86 -9.19 -44.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271319833.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.247 kcal (2) G-P(sol) polarization free energy of solvation -34.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds