Wall clock time and date at job start Tue Mar 31 2020 19:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.38781 * 2 1 4 4 C 1.53028 * 109.43335 * 119.87177 * 2 1 3 5 5 C 1.53368 * 109.74862 * 191.80697 * 4 2 1 6 6 C 1.50943 * 108.20966 * 309.35254 * 5 4 2 7 7 N 1.30127 * 128.28808 * 196.97997 * 6 5 4 8 8 N 1.40315 * 108.12261 * 179.97438 * 7 6 5 9 9 H 0.97001 * 126.00562 * 179.91694 * 8 7 6 10 10 C 1.35201 * 107.99116 * 359.64600 * 8 7 6 11 11 C 1.34570 * 107.62016 * 0.25958 * 10 8 7 12 12 C 1.50880 * 128.32344 * 179.73481 * 11 10 8 13 13 H 1.09000 * 109.72007 * 77.05527 * 12 11 10 14 14 C 1.50699 * 109.72070 * 316.39957 * 12 11 10 15 15 O 1.21283 * 120.00228 * 240.00259 * 14 12 11 16 16 N 1.34778 * 119.99587 * 60.00742 * 14 12 11 17 17 C 1.46498 * 119.99701 * 180.02562 * 16 14 12 18 18 C 1.53001 * 109.47097 * 179.97438 * 17 16 14 19 19 O 1.42904 * 112.93954 * 53.41348 * 18 17 16 20 20 C 1.53938 * 113.74664 * 281.67448 * 18 17 16 21 21 N 1.47577 * 86.11864 * 222.04699 * 20 18 17 22 22 C 1.36937 * 134.49235 * 204.64438 * 21 20 18 23 23 H 1.07995 * 120.00171 * 180.02562 * 22 21 20 24 24 C 1.38812 * 119.99966 * 359.97438 * 22 21 20 25 25 N 1.31624 * 120.00306 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00096 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.46917 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47417 * 120.00220 * 26 24 22 29 29 H 1.48503 * 109.46969 * 240.00093 * 26 24 22 30 30 C 1.47578 * 91.01330 * 24.64026 * 21 20 18 31 31 H 1.08999 * 109.47708 * 300.12772 * 1 2 3 32 32 H 1.08999 * 109.47360 * 60.13112 * 1 2 3 33 33 H 1.09006 * 109.46993 * 180.12484 * 1 2 3 34 34 H 1.08999 * 109.42271 * 71.71741 * 4 2 1 35 35 H 1.09005 * 109.42332 * 311.89513 * 4 2 1 36 36 H 1.09001 * 109.71425 * 189.67193 * 5 4 2 37 37 H 1.09001 * 109.71373 * 69.03858 * 5 4 2 38 38 H 1.07999 * 126.18989 * 180.28153 * 10 8 7 39 39 H 0.96998 * 120.00088 * 359.97438 * 16 14 12 40 40 H 1.08996 * 109.47187 * 299.99880 * 17 16 14 41 41 H 1.09008 * 109.47139 * 59.99600 * 17 16 14 42 42 H 0.96701 * 113.99873 * 309.66092 * 19 18 17 43 43 H 1.09006 * 113.76749 * 336.35181 * 20 18 17 44 44 H 1.09004 * 113.77146 * 107.74347 * 20 18 17 45 45 H 0.96994 * 120.00544 * 179.97438 * 25 24 22 46 46 H 1.08998 * 113.76533 * 221.05532 * 30 21 20 47 47 H 1.08999 * 113.77040 * 89.66445 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8918 1.0282 0.0000 4 6 2.0391 -0.7187 1.2514 5 6 3.5440 -0.4719 1.4146 6 6 4.2196 -0.7932 0.1036 7 7 5.4824 -1.0135 -0.1199 8 7 5.6448 -1.2714 -1.4895 9 1 6.4825 -1.4677 -1.9375 10 6 4.4276 -1.2043 -2.0742 11 6 3.5307 -0.9098 -1.1152 12 6 2.0403 -0.7203 -1.2544 13 1 1.5530 -1.6911 -1.3451 14 6 1.7455 0.1135 -2.4746 15 8 1.1616 1.1704 -2.3603 16 7 2.1306 -0.3154 -3.6929 17 6 1.8445 0.4955 -4.8790 18 6 2.3841 -0.2129 -6.1232 19 8 1.9162 -1.5576 -6.2455 20 6 3.9046 -0.0635 -6.3111 21 7 3.6062 0.1461 -7.7411 22 6 4.3103 -0.0235 -8.9033 23 1 3.8506 0.2101 -9.8522 24 6 5.6153 -0.4947 -8.8617 25 7 6.1759 -0.7789 -7.7052 26 14 6.5761 -0.7254 -10.4470 27 1 5.7262 -0.3382 -11.6016 28 1 7.7912 0.1276 -10.4181 29 1 6.9742 -2.1497 -10.5817 30 6 2.2442 0.6119 -7.4155 31 1 -0.3634 0.5158 0.8888 32 1 -0.3634 0.5118 -0.8911 33 1 -0.3633 -1.0277 0.0022 34 1 1.8556 -1.7888 1.1547 35 1 1.5123 -0.3392 2.1270 36 1 3.9393 -1.1164 2.1997 37 1 3.7194 0.5725 1.6725 38 1 4.2137 -1.3593 -3.1214 39 1 2.5979 -1.1605 -3.7842 40 1 0.7673 0.6303 -4.9757 41 1 2.3249 1.4688 -4.7783 42 1 2.0293 -2.0877 -5.4447 43 1 4.3244 0.8126 -5.8168 44 1 4.4642 -0.9768 -6.1084 45 1 7.0877 -1.1085 -7.6762 46 1 1.4781 0.2380 -8.0947 47 1 2.1762 1.6864 -7.2458 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271319833.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:16 Heat of formation + Delta-G solvation = 14.707360 kcal Electronic energy + Delta-G solvation = -29877.295436 eV Core-core repulsion = 25869.198123 eV Total energy + Delta-G solvation = -4008.097313 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.68314 -41.08362 -40.15879 -37.75213 -36.47876 -35.31090 -34.04492 -33.55935 -32.16881 -30.54023 -30.16007 -28.14017 -27.12896 -26.69369 -24.89815 -23.89391 -22.45075 -21.79680 -21.50670 -20.92466 -19.79186 -18.95977 -18.78320 -18.36359 -17.28831 -17.17466 -16.57829 -16.30767 -15.99662 -15.80967 -15.68449 -15.37705 -15.12807 -14.86742 -14.84252 -14.52980 -14.20478 -14.04420 -13.81823 -13.65672 -13.45929 -13.12095 -12.93364 -12.87163 -12.85815 -12.56100 -12.35249 -12.19329 -12.03090 -11.83446 -11.78766 -11.51184 -11.45243 -11.34877 -10.98854 -10.73762 -10.68014 -10.38827 -10.09466 -9.45668 -8.94041 -7.93345 -5.24769 0.89441 1.44448 1.44616 1.51684 1.54731 1.78223 1.93575 2.20362 2.44683 3.05359 3.27098 3.33627 3.42343 3.57601 3.74200 3.77281 3.90423 3.90818 4.08157 4.31852 4.36652 4.39778 4.52198 4.58020 4.66406 4.69557 4.75770 4.78119 4.80314 4.89367 4.95801 5.01228 5.06237 5.15190 5.16929 5.21520 5.30343 5.32931 5.33886 5.47998 5.56993 5.60266 5.67298 5.90953 6.35154 6.46371 6.68059 6.83135 6.90925 7.23599 7.57753 8.51134 9.23407 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016165 B = 0.003233 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.679147 B = 8659.420891 C =10042.095969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.068 4.068 3 H 0.058 0.942 4 C -0.101 4.101 5 C -0.042 4.042 6 C 0.083 3.917 7 N -0.318 5.318 8 N -0.478 5.478 9 H 0.449 0.551 10 C 0.072 3.928 11 C -0.246 4.246 12 C -0.013 4.013 13 H 0.127 0.873 14 C 0.524 3.476 15 O -0.566 6.566 16 N -0.719 5.719 17 C 0.118 3.882 18 C 0.099 3.901 19 O -0.538 6.538 20 C 0.145 3.855 21 N -0.635 5.635 22 C -0.232 4.232 23 H 0.080 0.920 24 C -0.063 4.063 25 N -0.949 5.949 26 Si 0.976 3.024 27 H -0.268 1.268 28 H -0.293 1.293 29 H -0.291 1.291 30 C 0.127 3.873 31 H 0.066 0.934 32 H 0.045 0.955 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.184 0.816 39 H 0.404 0.596 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.382 0.618 43 H 0.023 0.977 44 H 0.053 0.947 45 H 0.248 0.752 46 H 0.057 0.943 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.631 -3.150 19.700 22.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.087 4.087 3 H 0.076 0.924 4 C -0.139 4.139 5 C -0.081 4.081 6 C -0.086 4.086 7 N -0.141 5.141 8 N -0.187 5.187 9 H 0.295 0.705 10 C -0.076 4.076 11 C -0.259 4.259 12 C -0.035 4.035 13 H 0.145 0.855 14 C 0.312 3.688 15 O -0.444 6.444 16 N -0.373 5.373 17 C -0.007 4.007 18 C 0.056 3.944 19 O -0.345 6.345 20 C 0.019 3.981 21 N -0.361 5.361 22 C -0.361 4.361 23 H 0.098 0.902 24 C -0.256 4.256 25 N -0.598 5.598 26 Si 0.804 3.196 27 H -0.193 1.193 28 H -0.220 1.220 29 H -0.218 1.218 30 C 0.002 3.998 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.105 0.895 38 H 0.200 0.800 39 H 0.242 0.758 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.232 0.768 43 H 0.041 0.959 44 H 0.072 0.928 45 H 0.057 0.943 46 H 0.076 0.924 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.776 -2.353 19.443 21.462 hybrid contribution 1.244 -0.462 -1.545 2.037 sum -7.532 -2.814 17.898 19.621 Atomic orbital electron populations 1.21849 0.93805 1.02382 1.02245 1.20944 0.96492 0.98864 0.92441 0.92376 1.21628 0.93072 1.01657 0.97537 1.20317 0.94808 1.02850 0.90077 1.22825 0.90210 0.97758 0.97779 1.76975 1.19075 1.24371 0.93662 1.46420 1.09265 1.57172 1.05820 0.70490 1.22425 0.85688 0.99863 0.99632 1.19762 0.95782 1.17141 0.93168 1.19829 0.91060 1.00127 0.92517 0.85511 1.20981 0.77102 0.86096 0.84643 1.90666 1.42627 1.24609 1.86539 1.46009 1.60160 1.24963 1.06176 1.21707 1.01356 0.94635 0.83015 1.23114 0.93984 0.83589 0.93688 1.86589 1.84337 1.22023 1.41540 1.22836 0.92897 0.98435 0.83935 1.46032 1.11951 1.75813 1.02295 1.19393 0.94973 1.36444 0.85247 0.90208 1.25521 0.97774 1.02228 1.00094 1.69948 1.13822 1.51576 1.24426 0.85050 0.78269 0.76942 0.79311 1.19295 1.21975 1.21772 1.22800 0.87853 0.96585 0.92577 0.91474 0.93610 0.91377 0.90232 0.88425 0.88521 0.89535 0.79962 0.75844 0.90076 0.91298 0.76850 0.95881 0.92832 0.94292 0.92432 0.91266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 8.95 71.98 0.64 -1.65 16 2 C -0.07 -1.17 1.77 -10.66 -0.02 -1.19 16 3 H 0.06 1.29 7.77 -2.39 -0.02 1.28 16 4 C -0.10 -1.21 5.18 30.73 0.16 -1.05 16 5 C -0.04 -0.63 6.31 30.05 0.19 -0.44 16 6 C 0.08 1.83 7.10 43.44 0.31 2.14 16 7 N -0.32 -8.11 12.68 -47.14 -0.60 -8.71 16 8 N -0.48 -10.93 7.37 -57.88 -0.43 -11.35 16 9 H 0.45 8.54 8.96 -213.18 -1.91 6.63 16 10 C 0.07 1.55 10.99 83.33 0.92 2.46 16 11 C -0.25 -5.22 5.41 -20.10 -0.11 -5.33 16 12 C -0.01 -0.25 2.33 -12.10 -0.03 -0.28 16 13 H 0.13 1.74 8.13 -2.39 -0.02 1.72 16 14 C 0.52 12.75 6.84 87.66 0.60 13.35 16 15 O -0.57 -17.69 14.25 -3.04 -0.04 -17.74 16 16 N -0.72 -16.25 4.75 -463.06 -2.20 -18.45 16 17 C 0.12 3.25 5.28 86.38 0.46 3.71 16 18 C 0.10 3.34 1.52 -10.14 -0.02 3.32 16 19 O -0.54 -17.63 13.51 -148.98 -2.01 -19.64 16 20 C 0.14 6.32 6.92 86.48 0.60 6.91 16 21 N -0.63 -31.92 3.70 -720.36 -2.66 -34.59 16 22 C -0.23 -13.00 10.70 84.03 0.90 -12.10 16 23 H 0.08 4.34 7.83 -2.91 -0.02 4.31 16 24 C -0.06 -3.54 5.50 84.86 0.47 -3.07 16 25 N -0.95 -55.02 11.38 21.65 0.25 -54.77 16 26 Si 0.98 45.38 29.55 68.60 2.03 47.41 16 27 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 28 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 29 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 30 C 0.13 5.01 8.34 86.48 0.72 5.73 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.04 0.98 6.35 -2.39 -0.02 0.96 16 33 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 34 H 0.08 0.82 8.10 -2.39 -0.02 0.80 16 35 H 0.10 0.79 8.09 -2.38 -0.02 0.77 16 36 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.18 3.47 5.93 -2.91 -0.02 3.46 16 39 H 0.40 7.46 4.98 -92.71 -0.46 7.00 16 40 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.07 2.08 8.04 -2.38 -0.02 2.07 16 42 H 0.38 8.71 7.61 -74.06 -0.56 8.15 16 43 H 0.02 1.06 8.03 -2.38 -0.02 1.04 16 44 H 0.05 2.57 7.15 -2.38 -0.02 2.55 16 45 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 46 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 47 H 0.07 2.48 8.10 -2.39 -0.02 2.46 16 Total: -1.00 -75.46 373.89 -1.79 -77.25 By element: Atomic # 1 Polarization: 29.99 SS G_CDS: -1.91 Total: 28.08 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: 5.79 Total: 12.51 kcal Atomic # 7 Polarization: -122.23 SS G_CDS: -5.64 Total: -127.87 kcal Atomic # 8 Polarization: -35.33 SS G_CDS: -2.06 Total: -37.38 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -75.46 -1.79 -77.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271319833.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.958 kcal (2) G-P(sol) polarization free energy of solvation -75.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds