Wall clock time and date at job start Tue Mar 31 2020 19:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.93093 * 2 1 4 4 C 1.51282 * 110.01555 * 238.78945 * 2 1 3 5 5 N 1.29689 * 127.31156 * 49.82412 * 4 2 1 6 6 C 1.35903 * 108.79418 * 179.64689 * 5 4 2 7 7 C 1.47321 * 126.20958 * 180.02562 * 6 5 4 8 8 O 1.21623 * 120.00215 * 180.83015 * 7 6 5 9 9 N 1.34779 * 120.00158 * 0.84001 * 7 6 5 10 10 C 1.46502 * 120.00228 * 174.87328 * 9 7 6 11 11 C 1.46504 * 119.99789 * 354.86818 * 9 7 6 12 12 C 1.36566 * 107.58039 * 0.10927 * 6 5 4 13 13 N 1.34967 * 106.83592 * 0.13694 * 12 6 5 14 14 C 1.46538 * 127.27045 * 179.45690 * 13 12 6 15 15 C 1.53738 * 109.20611 * 161.51143 * 14 13 12 16 16 N 1.47071 * 108.92732 * 46.16598 * 15 14 13 17 17 C 1.34771 * 120.96694 * 116.05841 * 16 15 14 18 18 O 1.21282 * 119.99893 * 173.97747 * 17 16 15 19 19 C 1.50698 * 120.00238 * 353.97506 * 17 16 15 20 20 C 1.52998 * 109.47431 * 180.02562 * 19 17 16 21 21 C 1.50698 * 109.47431 * 179.97438 * 20 19 17 22 22 H 1.08000 * 119.99951 * 359.97438 * 21 20 19 23 23 C 1.37876 * 120.00170 * 180.02562 * 21 20 19 24 24 N 1.31513 * 119.99932 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99989 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46921 * 59.99977 * 25 23 21 27 27 H 1.48500 * 109.46880 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.47150 * 299.99995 * 25 23 21 29 29 H 1.08996 * 109.47154 * 312.99331 * 1 2 3 30 30 H 1.08996 * 109.47120 * 72.98978 * 1 2 3 31 31 H 1.09002 * 109.47041 * 192.99068 * 1 2 3 32 32 H 1.08996 * 109.46659 * 89.99590 * 10 9 7 33 33 H 1.08995 * 109.46963 * 209.99582 * 10 9 7 34 34 H 1.09004 * 109.46549 * 329.99998 * 10 9 7 35 35 H 1.09004 * 109.46669 * 84.10780 * 11 9 7 36 36 H 1.09000 * 109.47013 * 204.11025 * 11 9 7 37 37 H 1.09001 * 109.46670 * 324.11501 * 11 9 7 38 38 H 1.08001 * 126.57642 * 180.11819 * 12 6 5 39 39 H 1.08998 * 109.50687 * 281.56805 * 14 13 12 40 40 H 1.09002 * 109.50957 * 41.71622 * 14 13 12 41 41 H 1.09000 * 109.65556 * 286.33017 * 15 14 13 42 42 H 1.09004 * 109.64768 * 165.99248 * 15 14 13 43 43 H 1.08998 * 109.46915 * 60.00466 * 19 17 16 44 44 H 1.09002 * 109.47178 * 300.00258 * 19 17 16 45 45 H 1.09002 * 109.46998 * 300.00182 * 20 19 17 46 46 H 1.09006 * 109.47029 * 59.99617 * 20 19 17 47 47 H 0.97002 * 120.00044 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9015 1.0247 0.0000 4 6 2.0477 -0.7366 -1.2157 5 7 1.6916 -0.5633 -2.4506 6 6 2.4000 -1.4179 -3.2347 7 6 2.2983 -1.5427 -4.6991 8 8 2.9790 -2.3602 -5.2885 9 7 1.4510 -0.7507 -5.3857 10 6 1.4305 -0.7953 -6.8499 11 6 0.5504 0.1548 -4.6678 12 6 3.2218 -2.1414 -2.4185 13 7 2.9948 -1.7153 -1.1582 14 6 3.6302 -2.1996 0.0703 15 6 3.4359 -1.1584 1.1846 16 7 2.0329 -0.7173 1.1860 17 6 1.2317 -0.9568 2.2429 18 8 0.1120 -0.4918 2.2728 19 6 1.7272 -1.8025 3.3877 20 6 0.6307 -1.9179 4.4485 21 6 1.1259 -2.7640 5.5929 22 1 2.1229 -3.1784 5.5662 23 6 0.3059 -3.0100 6.6737 24 7 -0.9083 -2.5058 6.7060 25 14 0.9200 -4.0582 8.0926 26 1 2.1226 -3.4252 8.6914 27 1 -0.1443 -4.1703 9.1221 28 1 1.2703 -5.4119 7.5926 29 1 -0.3633 0.7008 0.7516 30 1 -0.3633 0.3006 -0.9827 31 1 -0.3633 -1.0014 0.2310 32 1 0.7102 -1.5435 -7.1805 33 1 1.1442 0.1817 -7.2392 34 1 2.4221 -1.0574 -7.2192 35 1 1.0779 1.0787 -4.4301 36 1 -0.3131 0.3800 -5.2937 37 1 0.2167 -0.3206 -3.7455 38 1 3.9193 -2.9077 -2.7232 39 1 3.1744 -3.1439 0.3679 40 1 4.6957 -2.3480 -0.1051 41 1 4.0864 -0.3026 1.0042 42 1 3.6783 -1.6043 2.1492 43 1 2.6103 -1.3383 3.8266 44 1 1.9834 -2.7964 3.0209 45 1 0.3741 -0.9240 4.8153 46 1 -0.2523 -2.3822 4.0092 47 1 -1.4851 -2.6785 7.4666 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271768796.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:13 Heat of formation + Delta-G solvation = 14.822986 kcal Electronic energy + Delta-G solvation = -29146.816488 eV Core-core repulsion = 25138.724189 eV Total energy + Delta-G solvation = -4008.092299 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.72215 -39.99897 -39.38199 -36.44203 -35.66960 -34.58175 -33.61695 -32.25803 -30.67886 -29.88104 -28.94934 -27.76951 -26.37554 -25.94108 -24.45930 -23.66740 -22.28793 -21.76985 -20.00671 -19.53881 -18.54390 -17.71289 -17.05522 -16.55225 -16.33631 -16.15245 -15.97519 -15.70981 -15.43879 -15.24188 -14.49302 -14.44084 -14.14645 -13.77624 -13.70151 -13.35043 -13.23996 -12.94390 -12.76520 -12.63717 -12.48202 -12.31068 -12.23360 -12.13763 -11.95915 -11.89191 -11.51939 -11.19980 -10.98469 -10.69249 -10.44390 -10.08810 -10.06463 -9.98708 -9.69678 -9.23172 -8.99798 -8.94942 -8.81456 -8.54896 -8.40187 -6.04177 -4.09408 1.37981 2.13162 2.19842 2.82345 2.91187 2.98231 3.28310 3.33981 3.34833 3.36656 3.83948 4.09646 4.31434 4.39348 4.51962 4.58705 4.73114 4.92942 5.02963 5.09031 5.09778 5.11903 5.19838 5.23782 5.30947 5.31485 5.35901 5.53572 5.60754 5.77020 5.81105 5.84793 5.97590 6.00746 6.12177 6.16643 6.29142 6.42874 6.56739 6.67893 6.73773 7.16929 7.42443 7.56878 7.63823 7.73883 7.96633 8.06482 8.26860 8.49617 8.98191 9.54718 11.06530 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.024805 B = 0.002355 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.515480 B =11887.871102 C =12395.624398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.235 3.765 3 H 0.096 0.904 4 C 0.207 3.793 5 N -0.447 5.447 6 C -0.070 4.070 7 C 0.606 3.394 8 O -0.550 6.550 9 N -0.612 5.612 10 C 0.088 3.912 11 C 0.083 3.917 12 C 0.043 3.957 13 N -0.447 5.447 14 C 0.082 3.918 15 C 0.097 3.903 16 N -0.635 5.635 17 C 0.519 3.481 18 O -0.511 6.511 19 C -0.129 4.129 20 C 0.038 3.962 21 C -0.530 4.530 22 H 0.055 0.945 23 C 0.059 3.941 24 N -0.888 5.888 25 Si 0.893 3.107 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.277 1.277 29 H 0.090 0.910 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.099 0.901 38 H 0.189 0.811 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.083 0.917 42 H 0.120 0.880 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.025 0.975 46 H 0.024 0.976 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.651 5.201 -20.927 23.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.130 3.870 3 H 0.114 0.886 4 C -0.058 4.058 5 N -0.166 5.166 6 C -0.198 4.198 7 C 0.395 3.605 8 O -0.428 6.428 9 N -0.344 5.344 10 C -0.055 4.055 11 C -0.059 4.059 12 C -0.097 4.097 13 N -0.128 5.128 14 C -0.041 4.041 15 C -0.027 4.027 16 N -0.373 5.373 17 C 0.310 3.690 18 O -0.384 6.384 19 C -0.169 4.169 20 C 0.000 4.000 21 C -0.569 4.569 22 H 0.073 0.927 23 C -0.143 4.143 24 N -0.526 5.526 25 Si 0.721 3.279 26 H -0.202 1.202 27 H -0.212 1.212 28 H -0.203 1.203 29 H 0.109 0.891 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.117 0.883 38 H 0.206 0.794 39 H 0.115 0.885 40 H 0.124 0.876 41 H 0.101 0.899 42 H 0.138 0.862 43 H 0.099 0.901 44 H 0.098 0.902 45 H 0.043 0.957 46 H 0.042 0.958 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.655 5.554 -21.264 23.620 hybrid contribution 1.063 -1.235 0.958 1.891 sum 9.718 4.319 -20.305 22.922 Atomic orbital electron populations 1.22057 0.90126 1.04688 1.02215 1.19755 0.96774 0.93238 0.77272 0.88627 1.24003 0.92901 0.93629 0.95278 1.70481 1.23604 1.22858 0.99696 1.20429 1.03186 1.02297 0.93911 1.16919 0.79082 0.80028 0.84518 1.90775 1.45874 1.36363 1.69789 1.47525 1.38879 1.41177 1.06854 1.21639 1.03054 1.01660 0.79148 1.22088 0.92165 0.93745 0.97926 1.22462 1.02703 1.01830 0.82750 1.45285 1.31262 1.29090 1.07135 1.22690 0.99477 0.99634 0.82331 1.22091 0.83489 0.97445 0.99638 1.48634 1.11433 1.59795 1.17404 1.21605 0.84853 0.80111 0.82466 1.90711 1.19730 1.49716 1.78274 1.21954 1.03000 0.97685 0.94291 1.18905 0.92117 0.98003 0.90929 1.21135 1.00111 1.32136 1.03486 0.92688 1.25018 0.94885 0.95984 0.98406 1.69976 1.07406 1.44409 1.30822 0.86652 0.78417 0.80812 0.82047 1.20224 1.21244 1.20254 0.89099 0.92003 0.91776 0.92759 0.91206 0.90732 0.92568 0.92148 0.88278 0.79435 0.88453 0.87625 0.89896 0.86178 0.90053 0.90249 0.95682 0.95789 0.92794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 7.73 37.16 0.29 -1.55 16 2 C 0.23 2.88 3.83 -68.28 -0.26 2.62 16 3 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 4 C 0.21 2.53 7.09 -154.63 -1.10 1.43 16 5 N -0.45 -5.70 7.67 -6.97 -0.05 -5.75 16 6 C -0.07 -0.90 6.66 -82.97 -0.55 -1.45 16 7 C 0.61 8.22 7.65 -12.57 -0.10 8.12 16 8 O -0.55 -8.65 16.51 5.26 0.09 -8.57 16 9 N -0.61 -6.82 3.27 -190.84 -0.62 -7.45 16 10 C 0.09 0.74 10.37 59.85 0.62 1.36 16 11 C 0.08 0.79 9.35 59.85 0.56 1.35 16 12 C 0.04 0.47 11.31 -16.78 -0.19 0.28 16 13 N -0.45 -4.70 3.11 -113.09 -0.35 -5.06 16 14 C 0.08 0.61 7.14 -3.64 -0.03 0.58 16 15 C 0.10 0.81 6.35 -3.35 -0.02 0.79 16 16 N -0.63 -7.98 2.95 -165.48 -0.49 -8.47 16 17 C 0.52 8.77 7.36 -10.99 -0.08 8.69 16 18 O -0.51 -10.51 12.18 5.56 0.07 -10.44 16 19 C -0.13 -2.31 4.05 -27.88 -0.11 -2.43 16 20 C 0.04 0.95 4.26 -27.88 -0.12 0.83 16 21 C -0.53 -14.23 9.11 -34.44 -0.31 -14.54 16 22 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 23 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 24 N -0.89 -26.45 13.29 55.43 0.74 -25.72 16 25 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 28 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 29 H 0.09 1.38 6.66 -51.93 -0.35 1.04 16 30 H 0.06 0.76 7.93 -51.93 -0.41 0.35 16 31 H 0.06 1.05 7.15 -51.93 -0.37 0.67 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.42 8.07 -51.93 -0.42 0.00 16 34 H 0.07 0.69 7.50 -51.93 -0.39 0.30 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.44 8.03 -51.93 -0.42 0.02 16 37 H 0.10 1.11 5.71 -51.93 -0.30 0.81 16 38 H 0.19 1.65 8.06 -52.49 -0.42 1.23 16 39 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.12 0.89 5.98 -51.93 -0.31 0.58 16 43 H 0.08 1.28 7.51 -51.93 -0.39 0.89 16 44 H 0.08 1.28 8.11 -51.93 -0.42 0.86 16 45 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 46 H 0.02 0.66 8.10 -51.93 -0.42 0.24 16 47 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 LS Contribution 379.39 15.07 5.72 5.72 Total: -1.00 -35.33 379.39 -8.55 -43.87 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -7.11 Total: -1.65 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: -1.50 Total: 7.65 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: -0.78 Total: -52.44 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: 0.15 Total: -19.01 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.33 -8.55 -43.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271768796.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.694 kcal (2) G-P(sol) polarization free energy of solvation -35.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds