Wall clock time and date at job start Tue Mar 31 2020 19:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.93093 * 2 1 4 4 C 1.51282 * 110.01555 * 238.78945 * 2 1 3 5 5 N 1.29689 * 127.31156 * 49.82412 * 4 2 1 6 6 C 1.35903 * 108.79418 * 179.64689 * 5 4 2 7 7 C 1.47321 * 126.20958 * 180.02562 * 6 5 4 8 8 O 1.21623 * 120.00215 * 180.83015 * 7 6 5 9 9 N 1.34779 * 120.00158 * 0.84001 * 7 6 5 10 10 C 1.46502 * 120.00228 * 174.87328 * 9 7 6 11 11 C 1.46504 * 119.99789 * 354.86818 * 9 7 6 12 12 C 1.36566 * 107.58039 * 0.10927 * 6 5 4 13 13 N 1.34967 * 106.83592 * 0.13694 * 12 6 5 14 14 C 1.46538 * 127.27045 * 179.45690 * 13 12 6 15 15 C 1.53738 * 109.20611 * 161.51143 * 14 13 12 16 16 N 1.47071 * 108.92732 * 46.16598 * 15 14 13 17 17 C 1.34771 * 120.96694 * 116.05841 * 16 15 14 18 18 O 1.21282 * 119.99893 * 173.97747 * 17 16 15 19 19 C 1.50698 * 120.00238 * 353.97506 * 17 16 15 20 20 C 1.52998 * 109.47431 * 180.02562 * 19 17 16 21 21 C 1.50698 * 109.47431 * 179.97438 * 20 19 17 22 22 H 1.08000 * 119.99951 * 359.97438 * 21 20 19 23 23 C 1.37876 * 120.00170 * 180.02562 * 21 20 19 24 24 N 1.31513 * 119.99932 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99989 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46921 * 59.99977 * 25 23 21 27 27 H 1.48500 * 109.46880 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.47150 * 299.99995 * 25 23 21 29 29 H 1.08996 * 109.47154 * 312.99331 * 1 2 3 30 30 H 1.08996 * 109.47120 * 72.98978 * 1 2 3 31 31 H 1.09002 * 109.47041 * 192.99068 * 1 2 3 32 32 H 1.08996 * 109.46659 * 89.99590 * 10 9 7 33 33 H 1.08995 * 109.46963 * 209.99582 * 10 9 7 34 34 H 1.09004 * 109.46549 * 329.99998 * 10 9 7 35 35 H 1.09004 * 109.46669 * 84.10780 * 11 9 7 36 36 H 1.09000 * 109.47013 * 204.11025 * 11 9 7 37 37 H 1.09001 * 109.46670 * 324.11501 * 11 9 7 38 38 H 1.08001 * 126.57642 * 180.11819 * 12 6 5 39 39 H 1.08998 * 109.50687 * 281.56805 * 14 13 12 40 40 H 1.09002 * 109.50957 * 41.71622 * 14 13 12 41 41 H 1.09000 * 109.65556 * 286.33017 * 15 14 13 42 42 H 1.09004 * 109.64768 * 165.99248 * 15 14 13 43 43 H 1.08998 * 109.46915 * 60.00466 * 19 17 16 44 44 H 1.09002 * 109.47178 * 300.00258 * 19 17 16 45 45 H 1.09002 * 109.46998 * 300.00182 * 20 19 17 46 46 H 1.09006 * 109.47029 * 59.99617 * 20 19 17 47 47 H 0.97002 * 120.00044 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9015 1.0247 0.0000 4 6 2.0477 -0.7366 -1.2157 5 7 1.6916 -0.5633 -2.4506 6 6 2.4000 -1.4179 -3.2347 7 6 2.2983 -1.5427 -4.6991 8 8 2.9790 -2.3602 -5.2885 9 7 1.4510 -0.7507 -5.3857 10 6 1.4305 -0.7953 -6.8499 11 6 0.5504 0.1548 -4.6678 12 6 3.2218 -2.1414 -2.4185 13 7 2.9948 -1.7153 -1.1582 14 6 3.6302 -2.1996 0.0703 15 6 3.4359 -1.1584 1.1846 16 7 2.0329 -0.7173 1.1860 17 6 1.2317 -0.9568 2.2429 18 8 0.1120 -0.4918 2.2728 19 6 1.7272 -1.8025 3.3877 20 6 0.6307 -1.9179 4.4485 21 6 1.1259 -2.7640 5.5929 22 1 2.1229 -3.1784 5.5662 23 6 0.3059 -3.0100 6.6737 24 7 -0.9083 -2.5058 6.7060 25 14 0.9200 -4.0582 8.0926 26 1 2.1226 -3.4252 8.6914 27 1 -0.1443 -4.1703 9.1221 28 1 1.2703 -5.4119 7.5926 29 1 -0.3633 0.7008 0.7516 30 1 -0.3633 0.3006 -0.9827 31 1 -0.3633 -1.0014 0.2310 32 1 0.7102 -1.5435 -7.1805 33 1 1.1442 0.1817 -7.2392 34 1 2.4221 -1.0574 -7.2192 35 1 1.0779 1.0787 -4.4301 36 1 -0.3131 0.3800 -5.2937 37 1 0.2167 -0.3206 -3.7455 38 1 3.9193 -2.9077 -2.7232 39 1 3.1744 -3.1439 0.3679 40 1 4.6957 -2.3480 -0.1051 41 1 4.0864 -0.3026 1.0042 42 1 3.6783 -1.6043 2.1492 43 1 2.6103 -1.3383 3.8266 44 1 1.9834 -2.7964 3.0209 45 1 0.3741 -0.9240 4.8153 46 1 -0.2523 -2.3822 4.0092 47 1 -1.4851 -2.6785 7.4666 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271768796.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:13 Heat of formation + Delta-G solvation = -8.221467 kcal Electronic energy + Delta-G solvation = -29147.815771 eV Core-core repulsion = 25138.724189 eV Total energy + Delta-G solvation = -4009.091582 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.59656 -41.16303 -40.39578 -37.50752 -36.58415 -35.79938 -35.23376 -33.63342 -32.20766 -30.75544 -29.86656 -28.57789 -27.72657 -27.18992 -25.62017 -24.52893 -23.46711 -23.11602 -21.15818 -20.43582 -19.67039 -18.82584 -18.39849 -17.73636 -17.34616 -17.17051 -17.05901 -16.66868 -16.60283 -16.32909 -16.27352 -15.46875 -15.04990 -14.95204 -14.62505 -14.44495 -14.16390 -14.13807 -13.97843 -13.74558 -13.49528 -13.41115 -13.34798 -13.14587 -13.03649 -12.83623 -12.77068 -12.69879 -12.57808 -12.47132 -11.87437 -11.56318 -11.42860 -11.27365 -10.95077 -10.82650 -10.53810 -10.32497 -9.94215 -9.80410 -9.43356 -8.16029 -6.29481 0.49661 1.19776 1.36905 1.44243 1.47493 1.55087 1.61738 1.88935 2.11583 2.41260 2.44212 2.94539 3.17639 3.39275 3.50074 3.68734 3.80224 4.03601 4.10101 4.16131 4.17094 4.31560 4.40091 4.42887 4.48491 4.52166 4.53810 4.56055 4.68621 4.78276 4.84714 4.87088 4.89245 5.00930 5.04428 5.07118 5.24024 5.39281 5.43300 5.53027 5.60528 5.66091 5.85861 5.87971 6.18879 6.26138 6.30298 6.66999 6.89645 7.12321 7.21076 7.40972 8.96109 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.024805 B = 0.002355 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.515480 B =11887.871102 C =12395.624398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.238 3.762 3 H 0.115 0.885 4 C 0.193 3.807 5 N -0.452 5.452 6 C -0.099 4.099 7 C 0.597 3.403 8 O -0.582 6.582 9 N -0.613 5.613 10 C 0.084 3.916 11 C 0.087 3.913 12 C 0.056 3.944 13 N -0.443 5.443 14 C 0.078 3.922 15 C 0.089 3.911 16 N -0.625 5.625 17 C 0.520 3.480 18 O -0.562 6.562 19 C -0.116 4.116 20 C 0.043 3.957 21 C -0.540 4.540 22 H 0.079 0.921 23 C -0.007 4.007 24 N -0.937 5.937 25 Si 0.970 3.030 26 H -0.261 1.261 27 H -0.292 1.292 28 H -0.263 1.263 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.032 0.968 32 H 0.059 0.941 33 H 0.098 0.902 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.211 0.789 39 H 0.099 0.901 40 H 0.148 0.852 41 H 0.109 0.891 42 H 0.136 0.864 43 H 0.112 0.888 44 H 0.104 0.896 45 H -0.016 1.016 46 H -0.021 1.021 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.806 4.549 -21.346 25.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.133 3.867 3 H 0.132 0.868 4 C -0.072 4.072 5 N -0.172 5.172 6 C -0.227 4.227 7 C 0.386 3.614 8 O -0.463 6.463 9 N -0.344 5.344 10 C -0.058 4.058 11 C -0.055 4.055 12 C -0.085 4.085 13 N -0.123 5.123 14 C -0.043 4.043 15 C -0.033 4.033 16 N -0.361 5.361 17 C 0.310 3.690 18 O -0.439 6.439 19 C -0.156 4.156 20 C 0.005 3.995 21 C -0.578 4.578 22 H 0.097 0.903 23 C -0.205 4.205 24 N -0.578 5.578 25 Si 0.794 3.206 26 H -0.186 1.186 27 H -0.218 1.218 28 H -0.188 1.188 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.051 0.949 32 H 0.078 0.922 33 H 0.117 0.883 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.228 0.772 39 H 0.117 0.883 40 H 0.166 0.834 41 H 0.127 0.873 42 H 0.154 0.846 43 H 0.130 0.870 44 H 0.122 0.878 45 H 0.003 0.997 46 H -0.002 1.002 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.864 4.915 -21.711 25.225 hybrid contribution 0.059 -0.997 1.011 1.421 sum 11.923 3.919 -20.700 24.208 Atomic orbital electron populations 1.21849 0.91851 1.02186 1.02064 1.19703 0.95443 0.94229 0.77278 0.86795 1.23843 0.93875 0.94627 0.94901 1.70432 1.23644 1.23141 1.00013 1.20576 1.04580 1.03579 0.93989 1.17148 0.79215 0.80069 0.84968 1.90742 1.47349 1.37830 1.70406 1.47714 1.38189 1.40494 1.07979 1.21807 1.02750 1.03537 0.77706 1.22084 0.92680 0.93096 0.97665 1.22828 1.01941 1.01193 0.82564 1.45461 1.30622 1.28264 1.07920 1.22987 1.01770 0.98964 0.80567 1.22512 0.80793 0.98962 1.01004 1.48480 1.12828 1.58722 1.16040 1.21371 0.84483 0.79790 0.83324 1.90713 1.21972 1.51719 1.79492 1.21694 1.01121 0.99778 0.92959 1.18684 0.93056 0.95013 0.92738 1.21689 1.00950 1.31546 1.03601 0.90298 1.26105 0.94958 0.97518 1.01889 1.70165 1.09199 1.46524 1.31865 0.85433 0.77941 0.79273 0.77962 1.18552 1.21810 1.18790 0.90991 0.90788 0.94866 0.92205 0.88344 0.91738 0.92419 0.89656 0.90035 0.77187 0.88262 0.83430 0.87336 0.84582 0.87016 0.87756 0.99742 1.00224 0.92996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.49 7.73 71.98 0.56 -2.94 16 2 C 0.24 5.62 3.83 44.25 0.17 5.79 16 3 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 4 C 0.19 4.41 7.09 138.14 0.98 5.39 16 5 N -0.45 -11.15 7.67 -175.95 -1.35 -12.50 16 6 C -0.10 -2.47 6.66 40.51 0.27 -2.20 16 7 C 0.60 15.93 7.65 86.63 0.66 16.59 16 8 O -0.58 -18.22 16.51 -4.11 -0.07 -18.28 16 9 N -0.61 -13.14 3.27 -875.93 -2.87 -16.01 16 10 C 0.08 1.32 10.37 127.77 1.33 2.64 16 11 C 0.09 1.55 9.35 127.77 1.20 2.75 16 12 C 0.06 1.12 11.31 83.82 0.95 2.07 16 13 N -0.44 -8.09 3.11 -511.71 -1.59 -9.68 16 14 C 0.08 0.84 7.14 86.62 0.62 1.46 16 15 C 0.09 1.13 6.35 86.52 0.55 1.68 16 16 N -0.62 -14.67 2.95 -795.84 -2.35 -17.02 16 17 C 0.52 17.55 7.36 87.66 0.64 18.20 16 18 O -0.56 -24.39 12.18 -3.04 -0.04 -24.43 16 19 C -0.12 -4.01 4.05 29.85 0.12 -3.89 16 20 C 0.04 2.21 4.26 29.85 0.13 2.34 16 21 C -0.54 -28.85 9.11 25.60 0.23 -28.62 16 22 H 0.08 3.75 7.74 -2.91 -0.02 3.73 16 23 C -0.01 -0.40 5.46 84.65 0.46 0.06 16 24 N -0.94 -57.85 13.29 21.45 0.28 -57.56 16 25 Si 0.97 42.56 29.54 68.60 2.03 44.59 16 26 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 27 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 28 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 29 H 0.07 2.34 6.66 -2.39 -0.02 2.32 16 30 H 0.07 1.87 7.93 -2.39 -0.02 1.86 16 31 H 0.03 1.14 7.15 -2.39 -0.02 1.12 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.10 0.96 8.07 -2.39 -0.02 0.94 16 34 H 0.06 1.16 7.50 -2.39 -0.02 1.14 16 35 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 36 H 0.08 1.08 8.03 -2.39 -0.02 1.06 16 37 H 0.08 1.79 5.71 -2.39 -0.01 1.78 16 38 H 0.21 3.10 8.06 -2.91 -0.02 3.07 16 39 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.15 0.44 8.14 -2.39 -0.02 0.42 16 41 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.14 1.35 5.98 -2.39 -0.01 1.33 16 43 H 0.11 3.18 7.51 -2.39 -0.02 3.17 16 44 H 0.10 3.09 8.11 -2.39 -0.02 3.07 16 45 H -0.02 -0.94 8.10 -2.39 -0.02 -0.96 16 46 H -0.02 -1.24 8.10 -2.38 -0.02 -1.26 16 47 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -82.49 379.39 3.88 -78.61 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: 0.98 Total: 10.95 kcal Atomic # 6 Polarization: 12.46 SS G_CDS: 8.86 Total: 21.33 kcal Atomic # 7 Polarization: -104.89 SS G_CDS: -7.88 Total: -112.77 kcal Atomic # 8 Polarization: -42.61 SS G_CDS: -0.10 Total: -42.71 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -82.49 3.88 -78.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271768796.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.389 kcal (2) G-P(sol) polarization free energy of solvation -82.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds