Wall clock time and date at job start Tue Mar 31 2020 19:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.92662 * 2 1 4 4 C 1.51273 * 109.94054 * 121.16130 * 2 1 3 5 5 N 1.29685 * 127.32126 * 288.53485 * 4 2 1 6 6 C 1.35909 * 108.79823 * 179.61891 * 5 4 2 7 7 C 1.47325 * 126.21102 * 180.09834 * 6 5 4 8 8 O 1.21622 * 120.00171 * 173.53359 * 7 6 5 9 9 N 1.34777 * 119.99616 * 353.53144 * 7 6 5 10 10 C 1.46498 * 119.99817 * 183.36943 * 9 7 6 11 11 C 1.46497 * 120.00379 * 3.36995 * 9 7 6 12 12 C 1.36557 * 107.57905 * 0.12957 * 6 5 4 13 13 N 1.34963 * 106.83982 * 0.15407 * 12 6 5 14 14 C 1.46537 * 127.27590 * 179.33722 * 13 12 6 15 15 C 1.53250 * 109.22905 * 161.62456 * 14 13 12 16 16 N 1.47090 * 109.18514 * 46.01981 * 15 14 13 17 17 C 1.34779 * 120.97441 * 116.05930 * 16 15 14 18 18 O 1.21278 * 120.00072 * 179.97438 * 17 16 15 19 19 C 1.50703 * 119.99817 * 359.97438 * 17 16 15 20 20 C 1.52997 * 109.46997 * 179.97438 * 19 17 16 21 21 C 1.50701 * 109.47349 * 179.97438 * 20 19 17 22 22 H 1.08003 * 119.99653 * 359.97438 * 21 20 19 23 23 C 1.37874 * 120.00041 * 179.97438 * 21 20 19 24 24 N 1.31506 * 120.00274 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99684 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47158 * 90.00097 * 25 23 21 27 27 H 1.48494 * 109.47079 * 209.99940 * 25 23 21 28 28 H 1.48501 * 109.47331 * 330.00336 * 25 23 21 29 29 H 1.09000 * 109.47292 * 298.83494 * 1 2 3 30 30 H 1.09000 * 109.47066 * 178.83412 * 1 2 3 31 31 H 1.08998 * 109.46933 * 58.83681 * 1 2 3 32 32 H 1.09007 * 109.46972 * 90.00099 * 10 9 7 33 33 H 1.09000 * 109.47660 * 209.99876 * 10 9 7 34 34 H 1.08996 * 109.47325 * 330.00507 * 10 9 7 35 35 H 1.09002 * 109.47356 * 84.10838 * 11 9 7 36 36 H 1.09001 * 109.47339 * 204.11331 * 11 9 7 37 37 H 1.09003 * 109.47295 * 324.11197 * 11 9 7 38 38 H 1.08002 * 126.58227 * 180.16756 * 12 6 5 39 39 H 1.08997 * 109.51107 * 281.55295 * 14 13 12 40 40 H 1.09004 * 109.50884 * 41.65032 * 14 13 12 41 41 H 1.09009 * 109.51883 * 165.91728 * 15 14 13 42 42 H 1.09002 * 109.51975 * 286.03111 * 15 14 13 43 43 H 1.08998 * 109.47275 * 299.99710 * 19 17 16 44 44 H 1.09000 * 109.47138 * 59.99476 * 19 17 16 45 45 H 1.09007 * 109.47042 * 299.99805 * 20 19 17 46 46 H 1.09000 * 109.47463 * 59.99848 * 20 19 17 47 47 H 0.97005 * 120.00499 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9015 1.0247 0.0000 4 6 2.0459 -0.7358 1.2169 5 7 2.0059 -0.3394 2.4510 6 6 2.5667 -1.2961 3.2367 7 6 2.7184 -1.2409 4.7011 8 8 3.1313 -2.2115 5.3067 9 7 2.3994 -0.1149 5.3696 10 6 2.6195 -0.0345 6.8157 11 6 1.8327 1.0285 4.6502 12 6 2.9649 -2.3174 2.4223 13 7 2.6421 -1.9606 1.1614 14 6 2.8815 -2.7245 -0.0660 15 6 1.9744 -2.1888 -1.1789 16 7 2.0329 -0.7191 -1.1848 17 6 2.5313 -0.0490 -2.2427 18 8 2.5708 1.1631 -2.2289 19 6 3.0397 -0.8059 -3.4426 20 6 3.5462 0.1844 -4.4931 21 6 4.0551 -0.5724 -5.6928 22 1 4.0211 -1.6519 -5.7046 23 6 4.5642 0.1131 -6.7754 24 7 4.6061 1.4274 -6.7608 25 14 5.1957 -0.8251 -8.2621 26 1 4.0857 -1.0278 -9.2276 27 1 6.2818 -0.0491 -8.9124 28 1 5.7213 -2.1445 -7.8282 29 1 -0.3634 0.4956 0.9002 30 1 -0.3633 -1.0275 -0.0209 31 1 -0.3633 0.5318 -0.8794 32 1 3.6204 0.3511 7.0100 33 1 1.8806 0.6330 7.2592 34 1 2.5214 -1.0276 7.2540 35 1 0.7561 0.8942 4.5449 36 1 2.0319 1.9436 5.2078 37 1 2.2883 1.0985 3.6625 38 1 3.4456 -3.2348 2.7285 39 1 3.9247 -2.6178 -0.3636 40 1 2.6592 -3.7768 0.1110 41 1 2.3147 -2.5705 -2.1416 42 1 0.9490 -2.5128 -1.0006 43 1 3.8548 -1.4628 -3.1392 44 1 2.2310 -1.4018 -3.8656 45 1 2.7307 0.8411 -4.7965 46 1 4.3548 0.7807 -4.0704 47 1 4.9645 1.9098 -7.5223 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271768797.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:16 Heat of formation + Delta-G solvation = 5.392724 kcal Electronic energy + Delta-G solvation = -29009.393709 eV Core-core repulsion = 25000.892483 eV Total energy + Delta-G solvation = -4008.501226 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.74628 -39.91710 -39.33737 -36.59806 -35.67683 -34.58550 -33.61201 -32.19410 -30.73263 -29.89868 -29.13235 -27.89482 -26.41979 -25.94579 -24.19927 -23.96156 -22.44033 -21.81360 -19.82932 -19.53443 -18.45837 -17.70504 -17.17866 -16.80060 -16.37159 -16.10949 -15.93939 -15.63696 -15.39701 -15.24562 -14.51862 -14.33379 -14.19949 -13.81486 -13.66808 -13.63440 -13.22595 -12.95638 -12.77704 -12.73700 -12.60853 -12.35753 -12.25956 -12.16287 -12.09031 -12.01259 -11.53874 -11.24633 -11.00781 -10.67339 -10.43780 -10.10294 -10.07301 -9.96946 -9.76958 -9.36140 -9.15866 -8.97146 -8.89453 -8.59167 -8.40705 -6.04347 -4.09627 1.37444 2.11494 2.18333 2.81895 2.90647 2.95228 3.27356 3.34132 3.34609 3.35803 3.80794 4.10783 4.29567 4.39205 4.51329 4.57558 4.72158 4.93248 4.98964 5.03189 5.06316 5.11280 5.20221 5.22180 5.24993 5.30883 5.31912 5.49739 5.54406 5.60252 5.69561 5.82971 5.85025 5.97374 5.97936 6.01461 6.17427 6.27905 6.44907 6.67281 6.72435 7.16411 7.39101 7.55089 7.63972 7.73399 7.96447 8.05957 8.25679 8.46048 8.98159 9.54599 11.06425 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023626 B = 0.002310 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.826079 B =12117.244022 C =12422.679969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.226 3.774 3 H 0.126 0.874 4 C 0.210 3.790 5 N -0.448 5.448 6 C -0.069 4.069 7 C 0.606 3.394 8 O -0.551 6.551 9 N -0.611 5.611 10 C 0.086 3.914 11 C 0.076 3.924 12 C 0.043 3.957 13 N -0.446 5.446 14 C 0.082 3.918 15 C 0.096 3.904 16 N -0.631 5.631 17 C 0.519 3.481 18 O -0.518 6.518 19 C -0.128 4.128 20 C 0.037 3.963 21 C -0.530 4.530 22 H 0.056 0.944 23 C 0.059 3.941 24 N -0.888 5.888 25 Si 0.893 3.107 26 H -0.280 1.280 27 H -0.286 1.286 28 H -0.274 1.274 29 H 0.076 0.924 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.107 0.893 38 H 0.189 0.811 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.120 0.880 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.025 0.975 46 H 0.024 0.976 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.054 -7.696 21.044 23.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.121 3.879 3 H 0.143 0.857 4 C -0.054 4.054 5 N -0.168 5.168 6 C -0.197 4.197 7 C 0.394 3.606 8 O -0.429 6.429 9 N -0.343 5.343 10 C -0.057 4.057 11 C -0.067 4.067 12 C -0.097 4.097 13 N -0.127 5.127 14 C -0.041 4.041 15 C -0.028 4.028 16 N -0.368 5.368 17 C 0.310 3.690 18 O -0.392 6.392 19 C -0.168 4.168 20 C -0.001 4.001 21 C -0.568 4.568 22 H 0.074 0.926 23 C -0.143 4.143 24 N -0.526 5.526 25 Si 0.721 3.279 26 H -0.206 1.206 27 H -0.212 1.212 28 H -0.199 1.199 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.125 0.875 38 H 0.206 0.794 39 H 0.115 0.885 40 H 0.125 0.875 41 H 0.138 0.862 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.101 0.899 45 H 0.043 0.957 46 H 0.042 0.958 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.035 -6.671 21.413 23.824 hybrid contribution 0.731 -1.292 -0.994 1.787 sum -7.304 -7.963 20.419 23.102 Atomic orbital electron populations 1.22042 0.92651 1.02563 1.03597 1.19617 0.94470 0.96359 0.77447 0.85664 1.23863 1.00780 0.85617 0.95170 1.70446 1.20003 1.26667 0.99685 1.20426 1.10933 0.94461 0.93897 1.16919 0.76826 0.82253 0.84566 1.90773 1.47812 1.35596 1.68687 1.47518 1.63156 1.15134 1.08497 1.21653 1.00998 1.03218 0.79821 1.22221 0.99004 0.86376 0.99087 1.22455 1.03163 1.01341 0.82738 1.45281 1.43641 1.16635 1.07152 1.22607 1.02743 0.96414 0.82329 1.21988 1.00102 0.81103 0.99651 1.48623 1.64730 1.05996 1.17495 1.21705 0.75393 0.88573 0.83350 1.90700 1.53966 1.14272 1.80212 1.21932 1.00788 1.00858 0.93192 1.18922 0.97033 0.93170 0.90960 1.21167 1.41659 0.92932 1.01034 0.92594 1.25021 0.95859 0.94834 0.98607 1.69985 1.45560 1.06215 1.30842 0.86589 0.78618 0.79785 0.82931 1.20628 1.21189 1.19901 0.90479 0.92482 0.90746 0.92753 0.91220 0.90542 0.92727 0.92165 0.87498 0.79397 0.88459 0.87536 0.86157 0.89885 0.90144 0.89884 0.95677 0.95775 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.45 37.16 0.35 -1.15 16 2 C 0.23 2.77 3.25 -68.29 -0.22 2.55 16 3 H 0.13 1.79 7.23 -51.93 -0.38 1.41 16 4 C 0.21 2.55 7.06 -154.62 -1.09 1.46 16 5 N -0.45 -5.70 7.78 -6.97 -0.05 -5.75 16 6 C -0.07 -0.88 6.66 -82.97 -0.55 -1.44 16 7 C 0.61 8.20 7.66 -12.56 -0.10 8.10 16 8 O -0.55 -8.62 16.45 5.26 0.09 -8.53 16 9 N -0.61 -6.84 3.27 -190.84 -0.62 -7.46 16 10 C 0.09 0.73 10.44 59.85 0.62 1.36 16 11 C 0.08 0.72 9.60 59.85 0.57 1.30 16 12 C 0.04 0.47 11.32 -16.78 -0.19 0.28 16 13 N -0.45 -4.65 3.11 -113.38 -0.35 -5.01 16 14 C 0.08 0.60 7.12 -3.89 -0.03 0.58 16 15 C 0.10 0.80 6.21 -3.59 -0.02 0.77 16 16 N -0.63 -7.96 2.63 -165.77 -0.44 -8.40 16 17 C 0.52 8.96 7.71 -10.98 -0.08 8.87 16 18 O -0.52 -11.24 15.52 5.56 0.09 -11.15 16 19 C -0.13 -2.30 3.99 -27.88 -0.11 -2.41 16 20 C 0.04 0.92 4.26 -27.88 -0.12 0.81 16 21 C -0.53 -14.22 9.11 -34.44 -0.31 -14.54 16 22 H 0.06 1.40 7.74 -52.48 -0.41 0.99 16 23 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 24 N -0.89 -26.51 13.29 55.43 0.74 -25.78 16 25 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 27 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 28 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.52 7.44 -51.93 -0.39 0.13 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.43 8.14 -51.92 -0.42 0.00 16 33 H 0.07 0.42 8.07 -51.93 -0.42 0.01 16 34 H 0.08 0.72 7.38 -51.93 -0.38 0.33 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.45 8.03 -51.93 -0.42 0.03 16 37 H 0.11 1.21 5.30 -51.93 -0.28 0.93 16 38 H 0.19 1.63 8.06 -52.49 -0.42 1.21 16 39 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.12 0.88 5.96 -51.92 -0.31 0.57 16 42 H 0.08 0.57 7.45 -51.93 -0.39 0.18 16 43 H 0.08 1.28 7.91 -51.93 -0.41 0.87 16 44 H 0.08 1.31 7.76 -51.93 -0.40 0.91 16 45 H 0.02 0.70 8.10 -51.92 -0.42 0.27 16 46 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 47 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 383.89 15.07 5.79 5.79 Total: -1.00 -35.97 383.89 -8.28 -44.25 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -7.11 Total: -1.92 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: -1.38 Total: 8.10 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: -0.73 Total: -52.40 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: 0.17 Total: -19.68 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.97 -8.28 -44.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271768797.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.647 kcal (2) G-P(sol) polarization free energy of solvation -35.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds