Wall clock time and date at job start Tue Mar 31 2020 19:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.92662 * 2 1 4 4 C 1.51273 * 109.94054 * 121.16130 * 2 1 3 5 5 N 1.29685 * 127.32126 * 288.53485 * 4 2 1 6 6 C 1.35909 * 108.79823 * 179.61891 * 5 4 2 7 7 C 1.47325 * 126.21102 * 180.09834 * 6 5 4 8 8 O 1.21622 * 120.00171 * 173.53359 * 7 6 5 9 9 N 1.34777 * 119.99616 * 353.53144 * 7 6 5 10 10 C 1.46498 * 119.99817 * 183.36943 * 9 7 6 11 11 C 1.46497 * 120.00379 * 3.36995 * 9 7 6 12 12 C 1.36557 * 107.57905 * 0.12957 * 6 5 4 13 13 N 1.34963 * 106.83982 * 0.15407 * 12 6 5 14 14 C 1.46537 * 127.27590 * 179.33722 * 13 12 6 15 15 C 1.53250 * 109.22905 * 161.62456 * 14 13 12 16 16 N 1.47090 * 109.18514 * 46.01981 * 15 14 13 17 17 C 1.34779 * 120.97441 * 116.05930 * 16 15 14 18 18 O 1.21278 * 120.00072 * 179.97438 * 17 16 15 19 19 C 1.50703 * 119.99817 * 359.97438 * 17 16 15 20 20 C 1.52997 * 109.46997 * 179.97438 * 19 17 16 21 21 C 1.50701 * 109.47349 * 179.97438 * 20 19 17 22 22 H 1.08003 * 119.99653 * 359.97438 * 21 20 19 23 23 C 1.37874 * 120.00041 * 179.97438 * 21 20 19 24 24 N 1.31506 * 120.00274 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99684 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47158 * 90.00097 * 25 23 21 27 27 H 1.48494 * 109.47079 * 209.99940 * 25 23 21 28 28 H 1.48501 * 109.47331 * 330.00336 * 25 23 21 29 29 H 1.09000 * 109.47292 * 298.83494 * 1 2 3 30 30 H 1.09000 * 109.47066 * 178.83412 * 1 2 3 31 31 H 1.08998 * 109.46933 * 58.83681 * 1 2 3 32 32 H 1.09007 * 109.46972 * 90.00099 * 10 9 7 33 33 H 1.09000 * 109.47660 * 209.99876 * 10 9 7 34 34 H 1.08996 * 109.47325 * 330.00507 * 10 9 7 35 35 H 1.09002 * 109.47356 * 84.10838 * 11 9 7 36 36 H 1.09001 * 109.47339 * 204.11331 * 11 9 7 37 37 H 1.09003 * 109.47295 * 324.11197 * 11 9 7 38 38 H 1.08002 * 126.58227 * 180.16756 * 12 6 5 39 39 H 1.08997 * 109.51107 * 281.55295 * 14 13 12 40 40 H 1.09004 * 109.50884 * 41.65032 * 14 13 12 41 41 H 1.09009 * 109.51883 * 165.91728 * 15 14 13 42 42 H 1.09002 * 109.51975 * 286.03111 * 15 14 13 43 43 H 1.08998 * 109.47275 * 299.99710 * 19 17 16 44 44 H 1.09000 * 109.47138 * 59.99476 * 19 17 16 45 45 H 1.09007 * 109.47042 * 299.99805 * 20 19 17 46 46 H 1.09000 * 109.47463 * 59.99848 * 20 19 17 47 47 H 0.97005 * 120.00499 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9015 1.0247 0.0000 4 6 2.0459 -0.7358 1.2169 5 7 2.0059 -0.3394 2.4510 6 6 2.5667 -1.2961 3.2367 7 6 2.7184 -1.2409 4.7011 8 8 3.1313 -2.2115 5.3067 9 7 2.3994 -0.1149 5.3696 10 6 2.6195 -0.0345 6.8157 11 6 1.8327 1.0285 4.6502 12 6 2.9649 -2.3174 2.4223 13 7 2.6421 -1.9606 1.1614 14 6 2.8815 -2.7245 -0.0660 15 6 1.9744 -2.1888 -1.1789 16 7 2.0329 -0.7191 -1.1848 17 6 2.5313 -0.0490 -2.2427 18 8 2.5708 1.1631 -2.2289 19 6 3.0397 -0.8059 -3.4426 20 6 3.5462 0.1844 -4.4931 21 6 4.0551 -0.5724 -5.6928 22 1 4.0211 -1.6519 -5.7046 23 6 4.5642 0.1131 -6.7754 24 7 4.6061 1.4274 -6.7608 25 14 5.1957 -0.8251 -8.2621 26 1 4.0857 -1.0278 -9.2276 27 1 6.2818 -0.0491 -8.9124 28 1 5.7213 -2.1445 -7.8282 29 1 -0.3634 0.4956 0.9002 30 1 -0.3633 -1.0275 -0.0209 31 1 -0.3633 0.5318 -0.8794 32 1 3.6204 0.3511 7.0100 33 1 1.8806 0.6330 7.2592 34 1 2.5214 -1.0276 7.2540 35 1 0.7561 0.8942 4.5449 36 1 2.0319 1.9436 5.2078 37 1 2.2883 1.0985 3.6625 38 1 3.4456 -3.2348 2.7285 39 1 3.9247 -2.6178 -0.3636 40 1 2.6592 -3.7768 0.1110 41 1 2.3147 -2.5705 -2.1416 42 1 0.9490 -2.5128 -1.0006 43 1 3.8548 -1.4628 -3.1392 44 1 2.2310 -1.4018 -3.8656 45 1 2.7307 0.8411 -4.7965 46 1 4.3548 0.7807 -4.0704 47 1 4.9645 1.9098 -7.5223 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271768797.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:15 Heat of formation + Delta-G solvation = -18.255205 kcal Electronic energy + Delta-G solvation = -29010.419160 eV Core-core repulsion = 25000.892483 eV Total energy + Delta-G solvation = -4009.526677 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.61592 -41.06964 -40.39076 -37.71050 -36.59310 -35.69856 -35.29703 -33.54066 -32.26501 -30.75443 -30.00980 -28.66532 -27.78988 -27.19926 -25.19018 -24.91872 -23.46400 -23.26867 -21.05258 -20.43088 -19.45459 -18.97327 -18.35464 -17.86022 -17.63376 -17.16445 -16.87598 -16.67458 -16.56060 -16.40726 -16.28135 -15.29146 -15.04195 -15.00675 -14.75896 -14.53742 -14.20794 -14.12481 -14.01609 -13.70030 -13.54280 -13.45401 -13.39947 -13.14624 -13.02807 -12.87946 -12.81102 -12.75409 -12.44858 -12.41845 -11.91648 -11.58304 -11.42271 -11.28761 -10.94568 -10.83029 -10.74603 -10.55210 -9.99893 -9.83315 -9.45219 -8.16279 -6.29906 0.49442 1.18459 1.35171 1.44604 1.46369 1.56941 1.58333 1.84738 2.10126 2.39406 2.44146 2.92657 3.17594 3.40821 3.48340 3.68707 3.79314 4.01105 4.08090 4.15060 4.20234 4.30076 4.39106 4.40837 4.47841 4.51892 4.53180 4.54928 4.65907 4.72386 4.80593 4.83272 4.88784 4.95458 5.04335 5.06176 5.16251 5.30377 5.39751 5.52776 5.61202 5.64283 5.85959 5.87392 6.17921 6.22345 6.28289 6.65587 6.89099 7.11513 7.14264 7.40728 8.96240 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023626 B = 0.002310 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.826079 B =12117.244022 C =12422.679969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.228 3.772 3 H 0.095 0.905 4 C 0.196 3.804 5 N -0.455 5.455 6 C -0.098 4.098 7 C 0.597 3.403 8 O -0.582 6.582 9 N -0.612 5.612 10 C 0.082 3.918 11 C 0.079 3.921 12 C 0.058 3.942 13 N -0.442 5.442 14 C 0.078 3.922 15 C 0.086 3.914 16 N -0.619 5.619 17 C 0.521 3.479 18 O -0.579 6.579 19 C -0.114 4.114 20 C 0.041 3.959 21 C -0.538 4.538 22 H 0.081 0.919 23 C -0.008 4.008 24 N -0.938 5.938 25 Si 0.971 3.029 26 H -0.272 1.272 27 H -0.291 1.291 28 H -0.253 1.253 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.097 0.903 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.213 0.787 39 H 0.100 0.900 40 H 0.150 0.850 41 H 0.138 0.862 42 H 0.108 0.892 43 H 0.110 0.890 44 H 0.114 0.886 45 H -0.017 1.017 46 H -0.021 1.021 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.522 -11.097 21.281 25.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.123 3.877 3 H 0.113 0.887 4 C -0.069 4.069 5 N -0.175 5.175 6 C -0.227 4.227 7 C 0.386 3.614 8 O -0.463 6.463 9 N -0.343 5.343 10 C -0.060 4.060 11 C -0.063 4.063 12 C -0.084 4.084 13 N -0.122 5.122 14 C -0.043 4.043 15 C -0.036 4.036 16 N -0.354 5.354 17 C 0.312 3.688 18 O -0.457 6.457 19 C -0.153 4.153 20 C 0.003 3.997 21 C -0.576 4.576 22 H 0.099 0.901 23 C -0.206 4.206 24 N -0.579 5.579 25 Si 0.795 3.205 26 H -0.198 1.198 27 H -0.217 1.217 28 H -0.176 1.176 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.116 0.884 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.230 0.770 39 H 0.118 0.882 40 H 0.168 0.832 41 H 0.156 0.844 42 H 0.127 0.873 43 H 0.128 0.872 44 H 0.132 0.868 45 H 0.001 0.999 46 H -0.003 1.003 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.535 -10.122 21.682 25.405 hybrid contribution 0.861 -0.205 -0.982 1.322 sum -7.674 -10.327 20.700 24.372 Atomic orbital electron populations 1.21961 0.90777 1.03617 1.03472 1.19532 0.95766 0.94975 0.77448 0.88724 1.23711 1.01847 0.86536 0.94782 1.70409 1.20136 1.26935 1.00050 1.20575 1.12612 0.95510 0.93966 1.17145 0.76744 0.82506 0.85002 1.90739 1.49590 1.36660 1.69295 1.47709 1.62188 1.14820 1.09581 1.21818 1.02358 1.03362 0.78438 1.22207 0.98804 0.86793 0.98500 1.22831 1.01645 1.01394 0.82518 1.45463 1.42662 1.16115 1.07959 1.22915 1.02669 0.98167 0.80519 1.22433 1.02198 0.77787 1.01158 1.48467 1.62803 1.08078 1.16068 1.21510 0.75295 0.87717 0.84298 1.90685 1.56705 1.16772 1.81506 1.21683 1.02649 0.99295 0.91713 1.18710 0.94257 0.93803 0.92937 1.21713 1.40527 0.94203 1.01164 0.90097 1.26122 0.96287 0.95671 1.02478 1.70175 1.47191 1.08500 1.31993 0.85361 0.77817 0.78818 0.78488 1.19800 1.21708 1.17648 0.89864 0.90678 0.91659 0.92081 0.88446 0.91596 0.92462 0.89797 0.89311 0.77044 0.88176 0.83236 0.84407 0.87342 0.87237 0.86778 0.99897 1.00250 0.92994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.45 71.98 0.68 -1.99 16 2 C 0.23 5.54 3.25 44.25 0.14 5.68 16 3 H 0.09 2.90 7.23 -2.39 -0.02 2.88 16 4 C 0.20 4.55 7.06 138.13 0.98 5.53 16 5 N -0.46 -11.39 7.78 -175.95 -1.37 -12.76 16 6 C -0.10 -2.46 6.66 40.51 0.27 -2.19 16 7 C 0.60 15.97 7.66 86.63 0.66 16.63 16 8 O -0.58 -18.12 16.45 -4.10 -0.07 -18.19 16 9 N -0.61 -13.31 3.27 -875.94 -2.87 -16.18 16 10 C 0.08 1.31 10.44 127.77 1.33 2.65 16 11 C 0.08 1.46 9.60 127.77 1.23 2.68 16 12 C 0.06 1.14 11.32 83.82 0.95 2.08 16 13 N -0.44 -8.05 3.11 -512.62 -1.60 -9.65 16 14 C 0.08 0.83 7.12 86.46 0.62 1.44 16 15 C 0.09 1.09 6.21 86.35 0.54 1.63 16 16 N -0.62 -14.77 2.63 -796.75 -2.09 -16.87 16 17 C 0.52 18.07 7.71 87.66 0.68 18.74 16 18 O -0.58 -26.65 15.52 -3.02 -0.05 -26.70 16 19 C -0.11 -3.95 3.99 29.85 0.12 -3.83 16 20 C 0.04 2.11 4.26 29.85 0.13 2.24 16 21 C -0.54 -28.73 9.11 25.60 0.23 -28.50 16 22 H 0.08 3.83 7.74 -2.91 -0.02 3.80 16 23 C -0.01 -0.46 5.46 84.66 0.46 0.00 16 24 N -0.94 -58.06 13.29 21.44 0.28 -57.77 16 25 Si 0.97 42.51 29.54 68.60 2.03 44.54 16 26 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 27 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 28 H -0.25 -10.12 7.11 99.48 0.71 -9.42 16 29 H 0.08 1.49 8.14 -2.39 -0.02 1.48 16 30 H 0.07 1.16 7.44 -2.39 -0.02 1.15 16 31 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.10 0.99 8.07 -2.39 -0.02 0.97 16 34 H 0.07 1.21 7.38 -2.39 -0.02 1.19 16 35 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.08 1.12 8.03 -2.39 -0.02 1.10 16 37 H 0.09 2.02 5.30 -2.39 -0.01 2.01 16 38 H 0.21 3.04 8.06 -2.91 -0.02 3.02 16 39 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.15 0.40 8.14 -2.38 -0.02 0.38 16 41 H 0.14 1.33 5.96 -2.38 -0.01 1.32 16 42 H 0.11 0.94 7.45 -2.39 -0.02 0.92 16 43 H 0.11 3.17 7.91 -2.39 -0.02 3.15 16 44 H 0.11 3.26 7.76 -2.39 -0.02 3.24 16 45 H -0.02 -1.04 8.10 -2.38 -0.02 -1.06 16 46 H -0.02 -1.26 8.10 -2.39 -0.02 -1.28 16 47 H 0.26 15.23 8.31 -92.70 -0.77 14.46 16 Total: -1.00 -84.39 383.89 4.26 -80.13 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 0.98 Total: 10.64 kcal Atomic # 6 Polarization: 13.79 SS G_CDS: 9.01 Total: 22.81 kcal Atomic # 7 Polarization: -105.59 SS G_CDS: -7.64 Total: -113.23 kcal Atomic # 8 Polarization: -44.77 SS G_CDS: -0.11 Total: -44.89 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -84.39 4.26 -80.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271768797.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.877 kcal (2) G-P(sol) polarization free energy of solvation -84.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds