Wall clock time and date at job start Tue Mar 31 2020 19:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47241 * 2 1 4 4 C 1.53005 * 109.47022 * 240.00553 * 2 1 3 5 5 C 1.52993 * 109.47139 * 299.99760 * 4 2 1 6 6 C 1.53004 * 109.47204 * 300.00470 * 5 4 2 7 7 C 1.52995 * 109.47430 * 59.99706 * 6 5 4 8 8 C 1.52991 * 109.47404 * 120.00266 * 2 1 3 9 9 C 1.53005 * 109.47265 * 300.00139 * 8 2 1 10 10 N 1.46494 * 109.47065 * 185.46363 * 9 8 2 11 11 C 1.36941 * 119.99969 * 175.10524 * 10 9 8 12 12 H 1.08003 * 119.99905 * 359.97438 * 11 10 9 13 13 C 1.38811 * 120.00328 * 179.97438 * 11 10 9 14 14 N 1.31622 * 119.99885 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00093 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47101 * 60.00131 * 15 13 11 17 17 H 1.48503 * 109.47104 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47053 * 300.00009 * 15 13 11 19 19 N 1.46500 * 109.47318 * 180.02562 * 8 2 1 20 20 C 1.34768 * 119.99982 * 58.39080 * 19 8 2 21 21 O 1.21583 * 120.00509 * 5.06446 * 20 19 8 22 22 C 1.47537 * 119.99934 * 185.06942 * 20 19 8 23 23 C 1.39801 * 120.97910 * 359.97438 * 22 20 19 24 24 N 1.32189 * 118.98137 * 179.97438 * 23 22 20 25 25 C 1.31943 * 121.14148 * 0.02562 * 24 23 22 26 26 N 1.31724 * 122.19346 * 359.97438 * 25 24 23 27 27 C 1.32779 * 120.87477 * 359.72516 * 26 25 24 28 28 O 1.35273 * 120.61750 * 180.28713 * 27 26 25 29 29 H 1.08994 * 109.47042 * 299.99704 * 1 2 3 30 30 H 1.09009 * 109.46845 * 59.99582 * 1 2 3 31 31 H 1.09001 * 109.47344 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47150 * 60.00143 * 4 2 1 33 33 H 1.09002 * 109.46625 * 179.97438 * 4 2 1 34 34 H 1.08994 * 109.47340 * 180.02562 * 5 4 2 35 35 H 1.09006 * 109.47333 * 59.99865 * 5 4 2 36 36 H 1.08997 * 109.46583 * 299.99636 * 6 5 4 37 37 H 1.08998 * 109.47339 * 180.02562 * 6 5 4 38 38 H 1.09001 * 109.47257 * 59.99861 * 7 6 5 39 39 H 1.09000 * 109.47606 * 179.97438 * 7 6 5 40 40 H 1.08999 * 109.47110 * 305.46903 * 9 8 2 41 41 H 1.09007 * 109.46782 * 65.46302 * 9 8 2 42 42 H 0.97001 * 120.00716 * 355.10277 * 10 9 8 43 43 H 0.96991 * 119.99824 * 180.02562 * 14 13 11 44 44 H 0.97004 * 119.99881 * 238.38483 * 19 8 2 45 45 H 1.07998 * 120.51286 * 359.97438 * 23 22 20 46 46 H 1.07993 * 118.90234 * 179.97438 * 25 24 23 47 47 H 0.96701 * 114.00461 * 270.23764 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.5300 -2.1636 -1.2495 6 6 2.0400 -2.8849 -0.0002 7 6 1.5300 -2.1638 1.2491 8 6 2.0400 -0.7213 1.2491 9 6 1.5300 -0.0001 2.4985 10 7 2.1228 -0.6106 3.6909 11 6 1.8908 -0.0666 4.9260 12 1 1.2711 0.8128 5.0209 13 6 2.4521 -0.6454 6.0560 14 7 3.2077 -1.7168 5.9403 15 14 2.1361 0.0972 7.7406 16 1 0.6777 0.0884 8.0199 17 1 2.8433 -0.7011 8.7740 18 1 2.6368 1.4951 7.7672 19 7 3.5050 -0.7207 1.2494 20 6 4.1784 0.4462 1.2170 21 8 3.5738 1.4991 1.2805 22 6 5.6495 0.4461 1.1044 23 6 6.3654 -0.7524 1.0304 24 7 7.6827 -0.7064 0.9298 25 6 8.3249 0.4458 0.8990 26 7 7.6964 1.6015 0.9655 27 6 6.3731 1.6529 1.0622 28 8 5.7326 2.8428 1.1244 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6767 -0.2072 -2.1393 33 1 3.1300 -0.7207 -1.2495 34 1 1.8937 -2.6775 -2.1392 35 1 0.4400 -2.1637 -1.2494 36 1 3.1300 -2.8849 -0.0003 37 1 1.6771 -3.9127 -0.0005 38 1 0.4400 -2.1638 1.2491 39 1 1.8930 -2.6780 2.1390 40 1 1.8111 1.0519 2.4509 41 1 0.4444 -0.0841 2.5487 42 1 2.6797 -1.4003 3.6057 43 1 3.5996 -2.1215 6.7299 44 1 3.9903 -1.5603 1.2730 45 1 5.8503 -1.7013 1.0551 46 1 9.4016 0.4412 0.8164 47 1 5.6135 3.1789 2.0233 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481959576.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:14 Heat of formation + Delta-G solvation = -40.532592 kcal Electronic energy + Delta-G solvation = -30973.425927 eV Core-core repulsion = 26962.933230 eV Total energy + Delta-G solvation = -4010.492697 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.52488 -41.57649 -39.21925 -38.54312 -36.44915 -35.05638 -34.37810 -33.53729 -32.83092 -32.39105 -30.83481 -27.88004 -26.76010 -26.13072 -25.23041 -24.69822 -23.06426 -22.59842 -21.59287 -20.34545 -19.57378 -19.22107 -18.95593 -18.58564 -17.56489 -16.93584 -16.70772 -16.34244 -16.18730 -15.75904 -15.72693 -15.23703 -15.08645 -14.91867 -14.86319 -14.60266 -14.48290 -13.93967 -13.75156 -13.56820 -13.33105 -13.12262 -12.91656 -12.82463 -12.66168 -12.51710 -12.32025 -12.26392 -12.13699 -11.93550 -11.81543 -11.79769 -11.22598 -11.12524 -11.05049 -10.90438 -10.73413 -10.50809 -10.41844 -9.82559 -8.90819 -7.94219 -5.18863 -0.70439 -0.24585 1.44206 1.45602 1.51776 1.85398 2.03736 2.27689 2.55239 2.66054 2.99667 3.21455 3.38502 3.54391 3.65595 3.75347 3.83173 3.89218 4.11609 4.19849 4.24856 4.37135 4.38592 4.47387 4.55493 4.57885 4.71660 4.80242 4.86750 4.94314 5.00121 5.05534 5.15036 5.18108 5.20765 5.28506 5.29666 5.41885 5.45485 5.48624 5.52472 5.58999 5.63447 5.77626 6.28818 6.34836 6.57625 6.82478 7.26572 7.36554 8.12431 8.40446 9.28294 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.007745 B = 0.005820 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3614.566777 B = 4809.580001 C = 6980.126358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 H 0.060 0.940 4 C -0.104 4.104 5 C -0.114 4.114 6 C -0.114 4.114 7 C -0.117 4.117 8 C 0.192 3.808 9 C 0.144 3.856 10 N -0.727 5.727 11 C -0.239 4.239 12 H 0.061 0.939 13 C -0.067 4.067 14 N -0.961 5.961 15 Si 0.963 3.037 16 H -0.280 1.280 17 H -0.292 1.292 18 H -0.287 1.287 19 N -0.694 5.694 20 C 0.571 3.429 21 O -0.543 6.543 22 C -0.268 4.268 23 C 0.206 3.794 24 N -0.533 5.533 25 C 0.338 3.662 26 N -0.558 5.558 27 C 0.405 3.595 28 O -0.470 6.470 29 H 0.042 0.958 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.051 0.949 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.056 0.944 40 H 0.020 0.980 41 H 0.020 0.980 42 H 0.377 0.623 43 H 0.250 0.750 44 H 0.403 0.597 45 H 0.197 0.803 46 H 0.245 0.755 47 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.809 -2.296 -16.965 17.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 H 0.078 0.922 4 C -0.141 4.141 5 C -0.151 4.151 6 C -0.151 4.151 7 C -0.155 4.155 8 C 0.106 3.894 9 C 0.016 3.984 10 N -0.370 5.370 11 C -0.371 4.371 12 H 0.079 0.921 13 C -0.260 4.260 14 N -0.612 5.612 15 Si 0.792 3.208 16 H -0.206 1.206 17 H -0.218 1.218 18 H -0.213 1.213 19 N -0.345 5.345 20 C 0.356 3.644 21 O -0.422 6.422 22 C -0.277 4.277 23 C 0.040 3.960 24 N -0.248 5.248 25 C 0.052 3.948 26 N -0.284 5.284 27 C 0.217 3.783 28 O -0.280 6.280 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.074 0.926 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.210 0.790 43 H 0.059 0.941 44 H 0.240 0.760 45 H 0.214 0.786 46 H 0.261 0.739 47 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 4.178 -1.403 -17.464 18.011 hybrid contribution -0.598 0.285 2.079 2.182 sum 3.580 -1.118 -15.384 15.835 Atomic orbital electron populations 1.21936 0.93828 1.02797 1.01657 1.21336 0.96812 0.99482 0.93788 0.92171 1.21456 0.99990 0.96452 0.96231 1.21556 1.01426 0.94336 0.97795 1.21543 1.00975 0.99382 0.93200 1.21775 1.02009 0.92564 0.99135 1.20449 0.78429 0.96678 0.93874 1.21197 0.95070 0.95979 0.86134 1.42256 1.59911 1.33406 1.01399 1.19460 1.23947 1.07836 0.85843 0.92095 1.25331 1.01031 0.98930 1.00682 1.69750 1.38791 1.23776 1.28909 0.85378 0.77596 0.77294 0.80492 1.20591 1.21848 1.21331 1.45695 1.07063 1.07730 1.74027 1.17654 0.85828 0.84441 0.76427 1.90742 1.69459 1.32119 1.49843 1.22096 0.96535 0.96383 1.12732 1.23835 0.89798 0.97638 0.84773 1.68524 1.09354 1.30878 1.16064 1.25885 1.02776 0.80595 0.85531 1.68207 1.09083 1.33039 1.18038 1.19675 0.86808 0.85589 0.86232 1.84537 1.75422 1.32905 1.35126 0.93932 0.91420 0.90758 0.91443 0.93047 0.90504 0.90975 0.91587 0.90202 0.89928 0.92564 0.96229 0.96192 0.79006 0.94116 0.75963 0.78606 0.73923 0.71195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 8.15 71.98 0.59 -2.90 16 2 C -0.09 -2.57 2.01 -10.80 -0.02 -2.59 16 3 H 0.06 2.03 6.22 -2.39 -0.01 2.02 16 4 C -0.10 -2.19 5.29 30.59 0.16 -2.03 16 5 C -0.11 -1.91 5.65 30.59 0.17 -1.74 16 6 C -0.11 -2.11 5.75 30.59 0.18 -1.93 16 7 C -0.12 -3.07 4.38 30.59 0.13 -2.94 16 8 C 0.19 5.86 0.09 3.60 0.00 5.86 16 9 C 0.14 5.97 4.36 86.38 0.38 6.35 16 10 N -0.73 -36.07 5.18 -343.44 -1.78 -37.85 16 11 C -0.24 -13.49 9.99 84.03 0.84 -12.65 16 12 H 0.06 3.45 7.83 -2.91 -0.02 3.43 16 13 C -0.07 -3.83 5.50 84.86 0.47 -3.37 16 14 N -0.96 -57.01 13.06 21.65 0.28 -56.73 16 15 Si 0.96 46.64 29.55 68.60 2.03 48.67 16 16 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 17 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 18 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 19 N -0.69 -20.41 3.46 -426.06 -1.47 -21.88 16 20 C 0.57 19.20 7.18 86.70 0.62 19.83 16 21 O -0.54 -21.83 11.61 16.24 0.19 -21.65 16 22 C -0.27 -7.87 5.92 -19.83 -0.12 -7.98 16 23 C 0.21 4.91 10.80 85.02 0.92 5.83 16 24 N -0.53 -12.15 10.42 -199.13 -2.07 -14.22 16 25 C 0.34 7.09 12.27 180.86 2.22 9.31 16 26 N -0.56 -14.79 10.45 -312.04 -3.26 -18.06 16 27 C 0.41 12.15 7.85 85.17 0.67 12.82 16 28 O -0.47 -14.38 11.81 -65.36 -0.77 -15.16 16 29 H 0.04 1.18 6.55 -2.39 -0.02 1.16 16 30 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.07 1.56 4.81 -2.39 -0.01 1.55 16 32 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.05 1.15 7.61 -2.39 -0.02 1.13 16 34 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.07 1.15 6.43 -2.38 -0.02 1.14 16 36 H 0.07 1.12 6.90 -2.39 -0.02 1.11 16 37 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.08 2.13 6.43 -2.39 -0.02 2.11 16 39 H 0.06 1.76 7.11 -2.39 -0.02 1.74 16 40 H 0.02 0.94 6.29 -2.39 -0.02 0.92 16 41 H 0.02 0.85 6.74 -2.38 -0.02 0.83 16 42 H 0.38 19.08 6.47 -92.71 -0.60 18.48 16 43 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 44 H 0.40 9.91 5.53 -92.71 -0.51 9.39 16 45 H 0.20 3.49 6.54 -2.91 -0.02 3.47 16 46 H 0.25 2.78 8.06 -2.91 -0.02 2.76 16 47 H 0.42 10.51 9.06 -74.06 -0.67 9.84 16 Total: -1.00 -73.67 361.48 -0.39 -74.06 By element: Atomic # 1 Polarization: 41.68 SS G_CDS: -0.73 Total: 40.95 kcal Atomic # 6 Polarization: 14.66 SS G_CDS: 7.20 Total: 21.87 kcal Atomic # 7 Polarization: -140.43 SS G_CDS: -8.31 Total: -148.74 kcal Atomic # 8 Polarization: -36.22 SS G_CDS: -0.58 Total: -36.80 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -73.67 -0.39 -74.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481959576.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.523 kcal (2) G-P(sol) polarization free energy of solvation -73.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds