Wall clock time and date at job start Tue Mar 31 2020 19:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47239 * 2 1 4 4 C 1.53002 * 109.46675 * 240.00023 * 2 1 3 5 5 C 1.53004 * 109.47306 * 299.99919 * 4 2 1 6 6 C 1.53007 * 109.46875 * 300.00203 * 5 4 2 7 7 C 1.53000 * 109.46956 * 59.99810 * 6 5 4 8 8 C 1.52996 * 109.47251 * 299.99836 * 7 6 5 9 9 C 1.53007 * 109.46812 * 180.02562 * 8 7 6 10 10 N 1.46501 * 109.47172 * 65.52310 * 9 8 7 11 11 C 1.36932 * 120.00233 * 175.03635 * 10 9 8 12 12 H 1.08001 * 119.99895 * 359.97438 * 11 10 9 13 13 C 1.38809 * 120.00152 * 179.97438 * 11 10 9 14 14 N 1.31611 * 120.00155 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99805 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47006 * 60.00164 * 15 13 11 17 17 H 1.48507 * 109.47036 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47522 * 300.00062 * 15 13 11 19 19 N 1.46501 * 109.47064 * 300.00147 * 8 7 6 20 20 C 1.34774 * 119.99573 * 183.94583 * 19 8 7 21 21 O 1.21592 * 120.00334 * 354.66299 * 20 19 8 22 22 C 1.47580 * 119.99665 * 174.66648 * 20 19 8 23 23 C 1.38050 * 119.72692 * 180.02562 * 22 20 19 24 24 N 1.34880 * 119.94922 * 179.97438 * 23 22 20 25 25 H 0.96999 * 120.30846 * 180.02562 * 24 23 22 26 26 C 1.34953 * 119.38042 * 0.03003 * 24 23 22 27 27 O 1.21862 * 120.26566 * 180.27438 * 26 24 23 28 28 C 1.41786 * 119.46289 * 359.97438 * 26 24 23 29 29 N 1.30607 * 120.03536 * 359.97438 * 28 26 24 30 30 H 1.09004 * 109.46894 * 299.99662 * 1 2 3 31 31 H 1.08991 * 109.47271 * 59.99873 * 1 2 3 32 32 H 1.09001 * 109.47378 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46633 * 180.02562 * 4 2 1 34 34 H 1.08991 * 109.47186 * 60.00051 * 4 2 1 35 35 H 1.08993 * 109.46907 * 180.02562 * 5 4 2 36 36 H 1.09000 * 109.46756 * 59.99873 * 5 4 2 37 37 H 1.09000 * 109.47195 * 299.99980 * 6 5 4 38 38 H 1.09005 * 109.46615 * 179.97438 * 6 5 4 39 39 H 1.09001 * 109.47033 * 179.97438 * 7 6 5 40 40 H 1.09000 * 109.47030 * 60.00068 * 7 6 5 41 41 H 1.09000 * 109.46716 * 185.52132 * 9 8 7 42 42 H 1.08996 * 109.47239 * 305.51907 * 9 8 7 43 43 H 0.97000 * 119.99935 * 355.03553 * 10 9 8 44 44 H 0.96998 * 120.00145 * 180.02562 * 14 13 11 45 45 H 0.96998 * 120.00209 * 3.93322 * 19 8 7 46 46 H 1.08002 * 120.02804 * 0.02562 * 23 22 20 47 47 H 1.08002 * 119.98219 * 180.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5299 -2.1638 -1.2493 6 6 2.0400 -2.8851 0.0000 7 6 1.5300 -2.1637 1.2492 8 6 2.0401 -0.7213 1.2492 9 6 1.5306 -0.0002 2.4988 10 7 2.1249 -0.6100 3.6909 11 6 1.8947 -0.0650 4.9259 12 1 1.2753 0.8146 5.0210 13 6 2.4575 -0.6431 6.0554 14 7 3.2127 -1.7147 5.9395 15 14 2.1440 0.1008 7.7401 16 1 0.6858 0.0924 8.0213 17 1 2.8515 -0.6976 8.7732 18 1 2.6448 1.4985 7.7650 19 7 3.5051 -0.7213 1.2491 20 6 4.1789 0.4431 1.3294 21 8 3.5749 1.4981 1.3040 22 6 5.6499 0.4376 1.4480 23 6 6.3345 1.6336 1.5304 24 7 7.6788 1.6339 1.6395 25 1 8.1651 2.4712 1.6981 26 6 8.3412 0.4583 1.6662 27 8 9.5553 0.4396 1.7693 28 6 7.6124 -0.7548 1.5798 29 7 6.3107 -0.7295 1.4758 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 3.1299 -0.7217 -1.2491 34 1 1.6766 -0.2075 -2.1392 35 1 1.8935 -2.6777 -2.1390 36 1 0.4399 -2.1637 -1.2492 37 1 3.1300 -2.8850 0.0000 38 1 1.6762 -3.9126 0.0002 39 1 1.8930 -2.6778 2.1392 40 1 0.4400 -2.1637 1.2492 41 1 1.8109 1.0520 2.4507 42 1 0.4451 -0.0850 2.5501 43 1 2.6815 -1.3998 3.6054 44 1 3.6056 -2.1189 6.7289 45 1 3.9900 -1.5594 1.1915 46 1 5.7939 2.5684 1.5083 47 1 8.1339 -1.7004 1.6008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495322191.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:26 Heat of formation + Delta-G solvation = -21.823869 kcal Electronic energy + Delta-G solvation = -30651.380927 eV Core-core repulsion = 26641.699501 eV Total energy + Delta-G solvation = -4009.681426 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.82981 -40.48987 -38.30869 -37.22520 -35.37148 -34.67320 -33.17754 -32.03317 -31.23234 -30.35477 -29.38258 -26.52811 -25.53379 -25.05442 -24.42698 -22.91397 -21.91152 -21.74743 -20.38797 -19.17666 -18.56479 -17.84624 -17.21748 -17.06056 -16.22206 -16.11192 -15.45447 -15.34631 -14.89556 -14.68770 -14.42762 -14.27903 -13.90760 -13.71281 -13.38086 -13.19772 -12.92403 -12.64242 -12.56819 -12.33816 -12.18529 -11.93358 -11.85672 -11.62790 -11.42582 -11.37751 -11.05455 -10.90440 -10.79021 -10.70421 -10.22928 -10.13633 -10.02547 -9.94983 -9.64116 -9.59797 -9.24043 -8.74562 -8.53111 -8.28174 -6.79528 -5.69305 -2.95449 0.38159 1.18867 2.36129 2.97343 3.43917 3.46990 3.51422 3.52281 3.83180 4.06896 4.13409 4.61782 4.64279 4.86603 4.92578 4.94087 4.97378 5.17577 5.31860 5.37154 5.53870 5.56841 5.65735 5.72156 5.80078 5.81176 5.86311 5.88905 6.00693 6.04138 6.13322 6.20202 6.21662 6.24339 6.26463 6.36491 6.50106 6.58052 6.59240 6.66410 6.78917 6.95026 7.16876 7.35829 7.53656 7.76982 8.01139 8.49974 8.62235 9.61213 10.20757 10.56198 11.53412 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.006978 B = 0.006011 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4011.415491 B = 4657.046800 C = 7484.815843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.098 4.098 3 H 0.090 0.910 4 C -0.109 4.109 5 C -0.120 4.120 6 C -0.120 4.120 7 C -0.122 4.122 8 C 0.182 3.818 9 C 0.140 3.860 10 N -0.725 5.725 11 C -0.230 4.230 12 H 0.067 0.933 13 C -0.015 4.015 14 N -0.934 5.934 15 Si 0.902 3.098 16 H -0.287 1.287 17 H -0.292 1.292 18 H -0.289 1.289 19 N -0.687 5.687 20 C 0.599 3.401 21 O -0.539 6.539 22 C -0.063 4.063 23 C 0.168 3.832 24 N -0.586 5.586 25 H 0.423 0.577 26 C 0.478 3.522 27 O -0.530 6.530 28 C 0.038 3.962 29 N -0.365 5.365 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.047 0.953 42 H 0.022 0.978 43 H 0.382 0.618 44 H 0.253 0.747 45 H 0.405 0.595 46 H 0.190 0.810 47 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.612 2.187 -16.706 17.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.118 4.118 3 H 0.108 0.892 4 C -0.147 4.147 5 C -0.157 4.157 6 C -0.158 4.158 7 C -0.160 4.160 8 C 0.096 3.904 9 C 0.012 3.988 10 N -0.369 5.369 11 C -0.361 4.361 12 H 0.085 0.915 13 C -0.211 4.211 14 N -0.583 5.583 15 Si 0.734 3.266 16 H -0.214 1.214 17 H -0.218 1.218 18 H -0.216 1.216 19 N -0.337 5.337 20 C 0.384 3.616 21 O -0.418 6.418 22 C -0.187 4.187 23 C 0.032 3.968 24 N -0.219 5.219 25 H 0.263 0.737 26 C 0.274 3.726 27 O -0.406 6.406 28 C -0.152 4.152 29 N -0.080 5.080 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.065 0.935 42 H 0.040 0.960 43 H 0.217 0.783 44 H 0.063 0.937 45 H 0.241 0.759 46 H 0.206 0.794 47 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 2.208 2.254 -16.568 16.866 hybrid contribution 0.986 0.854 1.282 1.829 sum 3.193 3.108 -15.286 15.922 Atomic orbital electron populations 1.21961 0.95047 1.01900 1.01662 1.21447 0.95811 1.00995 0.93570 0.89182 1.21500 1.00508 0.95370 0.97307 1.21575 1.00877 0.95781 0.97461 1.21562 1.00710 0.98832 0.94667 1.21821 1.01703 0.94069 0.98373 1.20578 0.78523 0.95817 0.95471 1.21151 0.95413 0.97046 0.85222 1.42242 1.59908 1.33672 1.01094 1.19159 1.24544 1.08120 0.84286 0.91531 1.24664 1.00644 0.98225 0.97541 1.69637 1.37637 1.22646 1.28371 0.86334 0.77521 0.78155 0.84582 1.21379 1.21835 1.21556 1.45623 1.06719 1.08549 1.72793 1.16961 0.84024 0.84512 0.76125 1.90726 1.68285 1.31178 1.51566 1.20614 0.95966 0.87432 1.14654 1.23203 0.82848 1.02324 0.88411 1.43636 1.07446 1.12399 1.58397 0.73715 1.18793 0.89132 0.85247 0.79442 1.90982 1.12771 1.86480 1.50381 1.24701 0.89373 0.97702 1.03420 1.67694 1.09617 1.28437 1.02237 0.92004 0.93179 0.92264 0.92285 0.92599 0.92700 0.91782 0.92106 0.92007 0.90222 0.90275 0.93498 0.95999 0.78342 0.93711 0.75864 0.79354 0.79101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 8.15 37.16 0.30 -1.54 16 2 C -0.10 -1.35 2.10 -90.62 -0.19 -1.54 16 3 H 0.09 1.42 6.28 -51.93 -0.33 1.09 16 4 C -0.11 -1.27 5.29 -26.73 -0.14 -1.41 16 5 C -0.12 -1.26 5.65 -26.73 -0.15 -1.41 16 6 C -0.12 -1.39 5.75 -26.73 -0.15 -1.55 16 7 C -0.12 -1.77 4.40 -26.73 -0.12 -1.88 16 8 C 0.18 2.87 0.09 -131.82 -0.01 2.86 16 9 C 0.14 2.85 4.27 -4.04 -0.02 2.83 16 10 N -0.72 -18.00 5.18 -59.91 -0.31 -18.31 16 11 C -0.23 -6.46 9.99 -15.06 -0.15 -6.61 16 12 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 13 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 14 N -0.93 -28.09 13.06 55.49 0.72 -27.36 16 15 Si 0.90 22.77 29.55 -169.99 -5.02 17.75 16 16 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 17 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 18 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 19 N -0.69 -10.83 3.56 -48.62 -0.17 -11.01 16 20 C 0.60 9.92 7.19 -12.45 -0.09 9.83 16 21 O -0.54 -9.84 12.58 5.28 0.07 -9.77 16 22 C -0.06 -0.90 6.71 -83.11 -0.56 -1.46 16 23 C 0.17 1.86 10.77 -16.28 -0.18 1.68 16 24 N -0.59 -5.78 5.28 -14.19 -0.08 -5.86 16 25 H 0.42 2.86 8.92 -40.82 -0.36 2.49 16 26 C 0.48 6.05 7.74 -14.82 -0.11 5.94 16 27 O -0.53 -8.13 17.95 5.04 0.09 -8.04 16 28 C 0.04 0.47 11.23 -16.72 -0.19 0.28 16 29 N -0.36 -5.08 9.63 -9.34 -0.09 -5.17 16 30 H 0.06 0.84 6.56 -51.93 -0.34 0.50 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.69 4.81 -51.93 -0.25 0.44 16 33 H 0.06 0.72 7.60 -51.93 -0.39 0.33 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.65 6.43 -51.93 -0.33 0.32 16 37 H 0.06 0.70 6.78 -51.93 -0.35 0.35 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 1.36 7.11 -51.93 -0.37 0.99 16 40 H 0.08 1.12 6.43 -51.93 -0.33 0.78 16 41 H 0.05 1.06 6.25 -51.93 -0.32 0.73 16 42 H 0.02 0.46 6.74 -51.93 -0.35 0.11 16 43 H 0.38 9.90 6.47 -40.82 -0.26 9.64 16 44 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 45 H 0.41 6.09 6.52 -40.82 -0.27 5.82 16 46 H 0.19 1.68 7.58 -52.49 -0.40 1.28 16 47 H 0.19 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 364.20 15.07 5.49 5.49 Total: -1.00 -34.36 364.20 -7.48 -41.84 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: -6.33 Total: 14.94 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: -1.85 Total: 5.50 kcal Atomic # 7 Polarization: -67.79 SS G_CDS: 0.08 Total: -67.72 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: 0.16 Total: -17.81 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.36 -7.48 -41.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495322191.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.020 kcal (2) G-P(sol) polarization free energy of solvation -34.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds