Wall clock time and date at job start Tue Mar 31 2020 19:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47239 * 2 1 4 4 C 1.53002 * 109.46675 * 240.00023 * 2 1 3 5 5 C 1.53004 * 109.47306 * 299.99919 * 4 2 1 6 6 C 1.53007 * 109.46875 * 300.00203 * 5 4 2 7 7 C 1.53000 * 109.46956 * 59.99810 * 6 5 4 8 8 C 1.52996 * 109.47251 * 299.99836 * 7 6 5 9 9 C 1.53007 * 109.46812 * 180.02562 * 8 7 6 10 10 N 1.46501 * 109.47172 * 65.52310 * 9 8 7 11 11 C 1.36932 * 120.00233 * 175.03635 * 10 9 8 12 12 H 1.08001 * 119.99895 * 359.97438 * 11 10 9 13 13 C 1.38809 * 120.00152 * 179.97438 * 11 10 9 14 14 N 1.31611 * 120.00155 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99805 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47006 * 60.00164 * 15 13 11 17 17 H 1.48507 * 109.47036 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47522 * 300.00062 * 15 13 11 19 19 N 1.46501 * 109.47064 * 300.00147 * 8 7 6 20 20 C 1.34774 * 119.99573 * 183.94583 * 19 8 7 21 21 O 1.21592 * 120.00334 * 354.66299 * 20 19 8 22 22 C 1.47580 * 119.99665 * 174.66648 * 20 19 8 23 23 C 1.38050 * 119.72692 * 180.02562 * 22 20 19 24 24 N 1.34880 * 119.94922 * 179.97438 * 23 22 20 25 25 H 0.96999 * 120.30846 * 180.02562 * 24 23 22 26 26 C 1.34953 * 119.38042 * 0.03003 * 24 23 22 27 27 O 1.21862 * 120.26566 * 180.27438 * 26 24 23 28 28 C 1.41786 * 119.46289 * 359.97438 * 26 24 23 29 29 N 1.30607 * 120.03536 * 359.97438 * 28 26 24 30 30 H 1.09004 * 109.46894 * 299.99662 * 1 2 3 31 31 H 1.08991 * 109.47271 * 59.99873 * 1 2 3 32 32 H 1.09001 * 109.47378 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46633 * 180.02562 * 4 2 1 34 34 H 1.08991 * 109.47186 * 60.00051 * 4 2 1 35 35 H 1.08993 * 109.46907 * 180.02562 * 5 4 2 36 36 H 1.09000 * 109.46756 * 59.99873 * 5 4 2 37 37 H 1.09000 * 109.47195 * 299.99980 * 6 5 4 38 38 H 1.09005 * 109.46615 * 179.97438 * 6 5 4 39 39 H 1.09001 * 109.47033 * 179.97438 * 7 6 5 40 40 H 1.09000 * 109.47030 * 60.00068 * 7 6 5 41 41 H 1.09000 * 109.46716 * 185.52132 * 9 8 7 42 42 H 1.08996 * 109.47239 * 305.51907 * 9 8 7 43 43 H 0.97000 * 119.99935 * 355.03553 * 10 9 8 44 44 H 0.96998 * 120.00145 * 180.02562 * 14 13 11 45 45 H 0.96998 * 120.00209 * 3.93322 * 19 8 7 46 46 H 1.08002 * 120.02804 * 0.02562 * 23 22 20 47 47 H 1.08002 * 119.98219 * 180.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5299 -2.1638 -1.2493 6 6 2.0400 -2.8851 0.0000 7 6 1.5300 -2.1637 1.2492 8 6 2.0401 -0.7213 1.2492 9 6 1.5306 -0.0002 2.4988 10 7 2.1249 -0.6100 3.6909 11 6 1.8947 -0.0650 4.9259 12 1 1.2753 0.8146 5.0210 13 6 2.4575 -0.6431 6.0554 14 7 3.2127 -1.7147 5.9395 15 14 2.1440 0.1008 7.7401 16 1 0.6858 0.0924 8.0213 17 1 2.8515 -0.6976 8.7732 18 1 2.6448 1.4985 7.7650 19 7 3.5051 -0.7213 1.2491 20 6 4.1789 0.4431 1.3294 21 8 3.5749 1.4981 1.3040 22 6 5.6499 0.4376 1.4480 23 6 6.3345 1.6336 1.5304 24 7 7.6788 1.6339 1.6395 25 1 8.1651 2.4712 1.6981 26 6 8.3412 0.4583 1.6662 27 8 9.5553 0.4396 1.7693 28 6 7.6124 -0.7548 1.5798 29 7 6.3107 -0.7295 1.4758 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 3.1299 -0.7217 -1.2491 34 1 1.6766 -0.2075 -2.1392 35 1 1.8935 -2.6777 -2.1390 36 1 0.4399 -2.1637 -1.2492 37 1 3.1300 -2.8850 0.0000 38 1 1.6762 -3.9126 0.0002 39 1 1.8930 -2.6778 2.1392 40 1 0.4400 -2.1637 1.2492 41 1 1.8109 1.0520 2.4507 42 1 0.4451 -0.0850 2.5501 43 1 2.6815 -1.3998 3.6054 44 1 3.6056 -2.1189 6.7289 45 1 3.9900 -1.5594 1.1915 46 1 5.7939 2.5684 1.5083 47 1 8.1339 -1.7004 1.6008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495322191.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:25 Heat of formation + Delta-G solvation = -47.084528 kcal Electronic energy + Delta-G solvation = -30652.476311 eV Core-core repulsion = 26641.699501 eV Total energy + Delta-G solvation = -4010.776810 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.85183 -41.70550 -39.45616 -38.36969 -36.42019 -36.35932 -34.63857 -33.32169 -32.71724 -31.59930 -30.73539 -27.80284 -26.67650 -26.46437 -25.46803 -24.66681 -23.01389 -22.92112 -21.64914 -20.26287 -19.63352 -19.34418 -18.75549 -18.28298 -17.30199 -17.13516 -16.88399 -16.59298 -16.19169 -16.01056 -15.77322 -15.44563 -15.27126 -15.06096 -14.61038 -14.56231 -14.45873 -13.94543 -13.78217 -13.53167 -13.52467 -13.06649 -12.89344 -12.85763 -12.80273 -12.71743 -12.61713 -12.40448 -12.20782 -12.11420 -11.89801 -11.77850 -11.32117 -11.12444 -11.04652 -10.85325 -10.69277 -10.37240 -9.78584 -9.37347 -8.88517 -7.90786 -5.16323 -0.56566 0.10210 1.43412 1.44631 1.46650 1.52832 1.82472 2.28902 2.56914 2.70122 3.05138 3.13425 3.41844 3.62988 3.76003 3.87443 3.89701 3.94224 4.14869 4.22809 4.29403 4.42909 4.50671 4.57032 4.62099 4.75050 4.81722 4.86165 4.92047 4.98979 5.05259 5.14656 5.18848 5.21774 5.24344 5.25994 5.31206 5.32939 5.45600 5.50070 5.51173 5.57693 5.65753 5.84447 6.30875 6.35128 6.52797 6.77500 7.35935 7.38508 8.16071 8.42245 9.31634 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.006978 B = 0.006011 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4011.415491 B = 4657.046800 C = 7484.815843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 H 0.068 0.932 4 C -0.103 4.103 5 C -0.114 4.114 6 C -0.114 4.114 7 C -0.117 4.117 8 C 0.187 3.813 9 C 0.142 3.858 10 N -0.729 5.729 11 C -0.237 4.237 12 H 0.064 0.936 13 C -0.070 4.070 14 N -0.962 5.962 15 Si 0.964 3.036 16 H -0.279 1.279 17 H -0.295 1.295 18 H -0.284 1.284 19 N -0.686 5.686 20 C 0.591 3.409 21 O -0.564 6.564 22 C -0.096 4.096 23 C 0.195 3.805 24 N -0.568 5.568 25 H 0.441 0.559 26 C 0.479 3.521 27 O -0.557 6.557 28 C 0.035 3.965 29 N -0.378 5.378 30 H 0.042 0.958 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.059 0.941 38 H 0.076 0.924 39 H 0.048 0.952 40 H 0.083 0.917 41 H 0.025 0.975 42 H 0.022 0.978 43 H 0.376 0.624 44 H 0.249 0.751 45 H 0.408 0.592 46 H 0.214 0.786 47 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.387 2.427 -18.069 18.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 H 0.086 0.914 4 C -0.141 4.141 5 C -0.151 4.151 6 C -0.152 4.152 7 C -0.154 4.154 8 C 0.101 3.899 9 C 0.015 3.985 10 N -0.372 5.372 11 C -0.369 4.369 12 H 0.082 0.918 13 C -0.263 4.263 14 N -0.614 5.614 15 Si 0.794 3.206 16 H -0.205 1.205 17 H -0.221 1.221 18 H -0.211 1.211 19 N -0.335 5.335 20 C 0.377 3.623 21 O -0.444 6.444 22 C -0.220 4.220 23 C 0.058 3.942 24 N -0.201 5.201 25 H 0.284 0.716 26 C 0.275 3.725 27 O -0.435 6.435 28 C -0.155 4.155 29 N -0.093 5.093 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.067 0.933 40 H 0.101 0.899 41 H 0.043 0.957 42 H 0.040 0.960 43 H 0.209 0.791 44 H 0.057 0.943 45 H 0.244 0.756 46 H 0.230 0.770 47 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 1.970 2.522 -17.959 18.242 hybrid contribution 1.041 0.855 1.693 2.164 sum 3.012 3.377 -16.267 16.884 Atomic orbital electron populations 1.21946 0.93946 1.02642 1.01776 1.21363 0.96655 0.99715 0.93491 0.91356 1.21456 1.00041 0.96117 0.96464 1.21556 1.01407 0.94737 0.97396 1.21533 1.00664 0.99352 0.93628 1.21752 1.01848 0.93054 0.98792 1.20497 0.78736 0.96396 0.94225 1.21206 0.95140 0.96162 0.85971 1.42330 1.59851 1.33432 1.01580 1.19480 1.23858 1.07823 0.85769 0.91776 1.25379 1.01086 0.98951 1.00839 1.69787 1.38827 1.23920 1.28818 0.85356 0.77592 0.77318 0.80365 1.20504 1.22109 1.21086 1.45625 1.06676 1.08659 1.72526 1.17330 0.85099 0.84260 0.75562 1.90703 1.69110 1.31792 1.52807 1.20460 0.95161 0.88825 1.17542 1.23400 0.82986 1.02207 0.85574 1.43504 1.07034 1.12738 1.56786 0.71602 1.18836 0.88705 0.85965 0.78962 1.90975 1.13827 1.86978 1.51709 1.25024 0.88880 0.98630 1.02996 1.67641 1.10236 1.28589 1.02868 0.93856 0.91138 0.91153 0.93050 0.90944 0.90657 0.90853 0.92202 0.90549 0.93290 0.89861 0.95677 0.96028 0.79149 0.94261 0.75551 0.76967 0.77169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 8.15 71.98 0.59 -2.84 16 2 C -0.09 -2.47 2.10 -10.79 -0.02 -2.49 16 3 H 0.07 2.15 6.28 -2.39 -0.02 2.14 16 4 C -0.10 -2.18 5.29 30.60 0.16 -2.02 16 5 C -0.11 -2.05 5.65 30.60 0.17 -1.88 16 6 C -0.11 -2.45 5.75 30.60 0.18 -2.28 16 7 C -0.12 -3.35 4.40 30.59 0.13 -3.22 16 8 C 0.19 5.97 0.09 3.60 0.00 5.97 16 9 C 0.14 5.98 4.27 86.38 0.37 6.35 16 10 N -0.73 -37.21 5.18 -343.45 -1.78 -38.99 16 11 C -0.24 -13.56 9.99 84.03 0.84 -12.72 16 12 H 0.06 3.62 7.83 -2.91 -0.02 3.60 16 13 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 14 N -0.96 -58.85 13.06 21.65 0.28 -58.57 16 15 Si 0.96 47.16 29.55 68.60 2.03 49.19 16 16 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 17 H -0.29 -14.45 7.11 99.48 0.71 -13.75 16 18 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 19 N -0.69 -21.97 3.56 -426.00 -1.51 -23.49 16 20 C 0.59 19.84 7.19 86.71 0.62 20.47 16 21 O -0.56 -20.93 12.58 -4.00 -0.05 -20.98 16 22 C -0.10 -2.74 6.71 41.21 0.28 -2.46 16 23 C 0.20 4.08 10.77 84.18 0.91 4.99 16 24 N -0.57 -10.28 5.28 -316.87 -1.67 -11.95 16 25 H 0.44 5.01 8.92 -92.71 -0.83 4.18 16 26 C 0.48 11.60 7.74 85.09 0.66 12.26 16 27 O -0.56 -16.55 17.95 -4.87 -0.09 -16.63 16 28 C 0.03 0.83 11.23 85.75 0.96 1.79 16 29 N -0.38 -10.47 9.63 -183.46 -1.77 -12.24 16 30 H 0.04 1.17 6.56 -2.38 -0.02 1.15 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.07 1.49 4.81 -2.39 -0.01 1.48 16 33 H 0.05 1.18 7.60 -2.38 -0.02 1.16 16 34 H 0.07 1.32 8.14 -2.39 -0.02 1.31 16 35 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.07 1.23 6.43 -2.39 -0.02 1.21 16 37 H 0.06 1.31 6.78 -2.39 -0.02 1.29 16 38 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 39 H 0.05 1.71 7.11 -2.39 -0.02 1.69 16 40 H 0.08 2.29 6.43 -2.39 -0.02 2.27 16 41 H 0.03 1.18 6.25 -2.39 -0.01 1.16 16 42 H 0.02 0.92 6.74 -2.39 -0.02 0.90 16 43 H 0.38 20.09 6.47 -92.71 -0.60 19.49 16 44 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 45 H 0.41 12.48 6.52 -92.71 -0.60 11.88 16 46 H 0.21 3.41 7.58 -2.91 -0.02 3.39 16 47 H 0.21 3.99 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -74.93 364.20 0.77 -74.17 By element: Atomic # 1 Polarization: 42.16 SS G_CDS: -0.98 Total: 41.18 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: 6.31 Total: 18.32 kcal Atomic # 7 Polarization: -138.78 SS G_CDS: -6.45 Total: -145.23 kcal Atomic # 8 Polarization: -37.48 SS G_CDS: -0.14 Total: -37.62 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Total: -74.93 0.77 -74.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495322191.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.082 kcal (2) G-P(sol) polarization free energy of solvation -74.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds