Wall clock time and date at job start Tue Mar 31 2020 19:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46581 * 2 1 4 4 C 1.53003 * 109.46982 * 120.00414 * 2 1 3 5 5 C 1.53003 * 109.46931 * 180.02562 * 4 2 1 6 6 C 1.53003 * 109.46789 * 299.99438 * 5 4 2 7 7 C 1.53002 * 109.47292 * 60.00153 * 6 5 4 8 8 C 1.52999 * 109.47129 * 300.00209 * 7 6 5 9 9 C 1.53002 * 109.47310 * 179.97438 * 8 7 6 10 10 N 1.46496 * 109.46907 * 294.97637 * 9 8 7 11 11 C 1.36945 * 119.99824 * 185.06029 * 10 9 8 12 12 H 1.07997 * 119.99790 * 0.02562 * 11 10 9 13 13 C 1.38809 * 120.00024 * 179.97438 * 11 10 9 14 14 N 1.31616 * 120.00045 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00171 * 359.97438 * 13 11 10 16 16 H 1.48505 * 109.47039 * 90.00247 * 15 13 11 17 17 H 1.48498 * 109.47453 * 209.99951 * 15 13 11 18 18 H 1.48505 * 109.47176 * 330.00272 * 15 13 11 19 19 N 1.46504 * 109.47074 * 299.99846 * 8 7 6 20 20 C 1.34776 * 119.99517 * 304.20001 * 19 8 7 21 21 O 1.21594 * 120.00625 * 354.56753 * 20 19 8 22 22 C 1.47581 * 119.99650 * 174.56191 * 20 19 8 23 23 C 1.38050 * 119.72561 * 179.72901 * 22 20 19 24 24 N 1.34877 * 119.94632 * 179.74012 * 23 22 20 25 25 H 0.97001 * 120.30614 * 180.22728 * 24 23 22 26 26 C 1.34960 * 119.38141 * 0.53880 * 24 23 22 27 27 O 1.21857 * 120.26721 * 179.69973 * 26 24 23 28 28 C 1.41786 * 119.45914 * 359.71036 * 26 24 23 29 29 N 1.30603 * 120.03706 * 0.03085 * 28 26 24 30 30 H 1.09003 * 109.47139 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47581 * 299.99581 * 1 2 3 32 32 H 1.09002 * 109.47315 * 60.00076 * 1 2 3 33 33 H 1.09006 * 109.46792 * 299.99813 * 4 2 1 34 34 H 1.08990 * 109.47396 * 59.99853 * 4 2 1 35 35 H 1.09002 * 109.46805 * 179.97438 * 5 4 2 36 36 H 1.08998 * 109.47047 * 59.99331 * 5 4 2 37 37 H 1.09003 * 109.47324 * 300.00512 * 6 5 4 38 38 H 1.08997 * 109.47375 * 180.02562 * 6 5 4 39 39 H 1.09003 * 109.46644 * 59.99942 * 7 6 5 40 40 H 1.08997 * 109.47333 * 179.97438 * 7 6 5 41 41 H 1.09007 * 109.46768 * 54.97076 * 9 8 7 42 42 H 1.08991 * 109.47143 * 174.97263 * 9 8 7 43 43 H 0.96996 * 120.00497 * 5.05887 * 10 9 8 44 44 H 0.97008 * 120.00271 * 179.97438 * 14 13 11 45 45 H 0.96996 * 119.99783 * 124.20898 * 19 8 7 46 46 H 1.07997 * 120.02252 * 359.97438 * 23 22 20 47 47 H 1.08002 * 119.97794 * 180.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5700 -0.7208 1.2495 6 6 4.0804 -1.4417 0.0003 7 6 3.5704 -0.7205 -1.2490 8 6 2.0404 -0.7209 -1.2493 9 6 1.5304 0.0008 -2.4982 10 7 1.9170 1.4126 -2.4384 11 6 1.4804 2.2835 -3.4009 12 1 0.8507 1.9295 -4.2037 13 6 1.8463 3.6212 -3.3439 14 7 1.4271 4.4581 -4.2692 15 14 2.9337 4.2338 -1.9541 16 1 4.3594 4.1177 -2.3531 17 1 2.6147 5.6552 -1.6656 18 1 2.6916 3.4156 -0.7387 19 7 1.5525 -2.1023 -1.2495 20 6 1.9469 -2.9560 -2.2150 21 8 2.6273 -2.5558 -3.1398 22 6 1.5530 -4.3768 -2.1495 23 6 1.9554 -5.2452 -3.1444 24 7 1.6024 -6.5457 -3.0863 25 1 1.8850 -7.1611 -3.7808 26 6 0.8470 -6.9814 -2.0563 27 8 0.5142 -8.1518 -1.9906 28 6 0.4436 -6.0661 -1.0513 29 7 0.8022 -4.8125 -1.1267 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6766 -0.2075 2.1392 34 1 1.6767 -1.7489 1.2492 35 1 3.9333 -1.2343 2.1397 36 1 3.9329 0.3070 1.2497 37 1 3.7174 -2.4695 0.0000 38 1 5.1704 -1.4418 0.0006 39 1 3.9335 0.3073 -1.2488 40 1 3.9344 -1.2338 -2.1390 41 1 1.9657 -0.4578 -3.3861 42 1 0.4442 -0.0768 -2.5446 43 1 2.4823 1.7306 -1.7171 44 1 1.6824 5.3931 -4.2293 45 1 0.9456 -2.4024 -0.5550 46 1 2.5555 -4.8843 -3.9665 47 1 -0.1606 -6.4058 -0.2231 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495322193.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:32 Heat of formation + Delta-G solvation = -18.238973 kcal Electronic energy + Delta-G solvation = -30344.646345 eV Core-core repulsion = 26335.120372 eV Total energy + Delta-G solvation = -4009.525973 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.16994 -40.67103 -38.53466 -37.51523 -35.70999 -34.71088 -33.58574 -32.35617 -31.61296 -30.79222 -29.32515 -26.64820 -25.87610 -25.17867 -24.86266 -22.77662 -21.86426 -21.50205 -20.69383 -19.50189 -18.96648 -18.38834 -17.66252 -17.53253 -16.46652 -16.45685 -15.49584 -15.21524 -14.96437 -14.83860 -14.67116 -14.28414 -14.05928 -13.97528 -13.78966 -13.50437 -13.36431 -12.81768 -12.71416 -12.50885 -12.24874 -11.97617 -11.85859 -11.78002 -11.67209 -11.46409 -11.25117 -11.09905 -10.86838 -10.67910 -10.46628 -10.25183 -10.21046 -9.99664 -9.90590 -9.53751 -9.42981 -8.86495 -8.79177 -8.61591 -7.14128 -5.71562 -3.05765 0.03643 0.83431 2.04063 2.62548 3.11397 3.37884 3.41438 3.43060 3.47356 3.71191 3.79411 4.32612 4.56616 4.62739 4.75208 4.84876 4.86245 4.89370 5.21447 5.29575 5.41565 5.53470 5.56322 5.60596 5.64432 5.68154 5.69951 5.73108 5.79319 5.88076 5.93339 6.01986 6.09184 6.21522 6.25490 6.33221 6.39198 6.43379 6.52524 6.62038 6.76404 6.79342 7.00102 7.02109 7.20024 7.69109 8.05314 8.28272 8.47348 9.26836 9.98993 10.19080 11.47281 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016759 B = 0.003444 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.365153 B = 8127.782820 C = 8835.760993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 H 0.090 0.910 4 C -0.115 4.115 5 C -0.120 4.120 6 C -0.115 4.115 7 C -0.130 4.130 8 C 0.177 3.823 9 C 0.150 3.850 10 N -0.749 5.749 11 C -0.235 4.235 12 H 0.089 0.911 13 C 0.003 3.997 14 N -0.936 5.936 15 Si 0.880 3.120 16 H -0.284 1.284 17 H -0.292 1.292 18 H -0.277 1.277 19 N -0.693 5.693 20 C 0.586 3.414 21 O -0.529 6.529 22 C -0.073 4.073 23 C 0.175 3.825 24 N -0.586 5.586 25 H 0.426 0.574 26 C 0.477 3.523 27 O -0.524 6.524 28 C 0.039 3.961 29 N -0.370 5.370 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.047 0.953 42 H 0.031 0.969 43 H 0.359 0.641 44 H 0.258 0.742 45 H 0.406 0.594 46 H 0.193 0.807 47 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.632 -21.414 9.808 23.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 H 0.109 0.891 4 C -0.152 4.152 5 C -0.158 4.158 6 C -0.152 4.152 7 C -0.168 4.168 8 C 0.092 3.908 9 C 0.023 3.977 10 N -0.397 5.397 11 C -0.365 4.365 12 H 0.107 0.893 13 C -0.192 4.192 14 N -0.585 5.585 15 Si 0.711 3.289 16 H -0.211 1.211 17 H -0.218 1.218 18 H -0.203 1.203 19 N -0.344 5.344 20 C 0.370 3.630 21 O -0.406 6.406 22 C -0.197 4.197 23 C 0.038 3.962 24 N -0.219 5.219 25 H 0.266 0.734 26 C 0.273 3.727 27 O -0.400 6.400 28 C -0.151 4.151 29 N -0.086 5.086 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.065 0.935 42 H 0.049 0.951 43 H 0.193 0.807 44 H 0.068 0.932 45 H 0.244 0.756 46 H 0.209 0.791 47 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 1.607 -21.001 9.626 23.158 hybrid contribution 0.836 -0.355 0.311 0.960 sum 2.443 -21.356 9.937 23.681 Atomic orbital electron populations 1.21862 0.94614 1.01130 1.02955 1.21369 0.96435 1.00460 0.92797 0.89134 1.21628 0.95547 1.00413 0.97627 1.21554 0.95774 1.00855 0.97619 1.21494 0.99724 0.99279 0.94732 1.21943 0.94150 1.01902 0.98804 1.20605 0.93901 0.79809 0.96498 1.21028 0.97315 0.84833 0.94573 1.42654 1.61764 1.04243 1.30994 1.19039 1.25315 0.88950 1.03212 0.89302 1.24626 1.00518 0.95975 0.98062 1.69697 1.49856 1.03721 1.35206 0.86616 0.81284 0.78115 0.82908 1.21111 1.21822 1.20344 1.45822 1.48681 1.10955 1.28977 1.17159 0.80102 0.83161 0.82594 1.90830 1.39271 1.77106 1.33362 1.20607 1.07598 0.96403 0.95110 1.23284 0.91927 0.82362 0.98577 1.43700 1.43284 1.10047 1.24858 0.73443 1.18800 0.80042 0.90590 0.83302 1.91007 1.55245 1.17454 1.76260 1.24728 1.02934 0.87661 0.99800 1.67697 1.04202 1.16523 1.20138 0.93343 0.92823 0.90756 0.91946 0.92080 0.92462 0.91972 0.92444 0.92470 0.90866 0.89411 0.93490 0.95101 0.80685 0.93164 0.75648 0.79057 0.78985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 8.67 37.16 0.32 -1.68 16 2 C -0.09 -1.29 1.78 -90.62 -0.16 -1.46 16 3 H 0.09 1.51 6.67 -51.93 -0.35 1.17 16 4 C -0.11 -1.30 5.03 -26.73 -0.13 -1.43 16 5 C -0.12 -1.37 5.92 -26.73 -0.16 -1.53 16 6 C -0.11 -1.41 5.77 -26.73 -0.15 -1.57 16 7 C -0.13 -1.99 4.33 -26.73 -0.12 -2.10 16 8 C 0.18 2.69 0.11 -131.81 -0.01 2.68 16 9 C 0.15 2.97 4.56 -4.04 -0.02 2.95 16 10 N -0.75 -17.52 4.80 -59.91 -0.29 -17.81 16 11 C -0.24 -6.65 10.47 -15.06 -0.16 -6.81 16 12 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 13 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 14 N -0.94 -29.55 13.97 55.49 0.78 -28.77 16 15 Si 0.88 22.00 27.73 -169.99 -4.71 17.29 16 16 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 17 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 18 H -0.28 -6.38 6.52 56.52 0.37 -6.02 16 19 N -0.69 -8.78 3.72 -48.62 -0.18 -8.96 16 20 C 0.59 7.55 7.13 -12.45 -0.09 7.46 16 21 O -0.53 -8.28 12.57 5.28 0.07 -8.21 16 22 C -0.07 -0.72 6.71 -83.11 -0.56 -1.28 16 23 C 0.17 1.22 10.77 -16.28 -0.18 1.05 16 24 N -0.59 -3.55 5.28 -14.20 -0.08 -3.62 16 25 H 0.43 1.41 8.92 -40.82 -0.36 1.05 16 26 C 0.48 4.16 7.74 -14.82 -0.11 4.05 16 27 O -0.52 -6.21 17.95 5.05 0.09 -6.12 16 28 C 0.04 0.31 11.23 -16.72 -0.19 0.12 16 29 N -0.37 -3.41 9.63 -9.34 -0.09 -3.50 16 30 H 0.05 0.55 6.78 -51.93 -0.35 0.20 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 1.21 6.55 -51.93 -0.34 0.87 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.63 6.95 -51.93 -0.36 0.27 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.69 7.54 -51.93 -0.39 0.30 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.07 1.24 7.08 -51.93 -0.37 0.87 16 40 H 0.09 1.47 6.06 -51.93 -0.31 1.16 16 41 H 0.05 1.03 6.44 -51.93 -0.33 0.70 16 42 H 0.03 0.63 6.71 -51.93 -0.35 0.28 16 43 H 0.36 8.16 3.25 -40.82 -0.13 8.02 16 44 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 45 H 0.41 4.53 5.51 -40.82 -0.22 4.31 16 46 H 0.19 0.99 7.58 -52.49 -0.40 0.60 16 47 H 0.19 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 363.27 15.07 5.47 5.47 Total: -1.00 -35.00 363.27 -7.16 -42.15 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -6.40 Total: 11.63 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -1.81 Total: 0.45 kcal Atomic # 7 Polarization: -62.81 SS G_CDS: 0.14 Total: -62.67 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: 0.16 Total: -14.33 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.71 Total: 17.29 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.00 -7.16 -42.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495322193.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.914 kcal (2) G-P(sol) polarization free energy of solvation -34.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds