Wall clock time and date at job start Tue Mar 31 2020 19:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46581 * 2 1 4 4 C 1.53003 * 109.46982 * 120.00414 * 2 1 3 5 5 C 1.53003 * 109.46931 * 180.02562 * 4 2 1 6 6 C 1.53003 * 109.46789 * 299.99438 * 5 4 2 7 7 C 1.53002 * 109.47292 * 60.00153 * 6 5 4 8 8 C 1.52999 * 109.47129 * 300.00209 * 7 6 5 9 9 C 1.53002 * 109.47310 * 179.97438 * 8 7 6 10 10 N 1.46496 * 109.46907 * 294.97637 * 9 8 7 11 11 C 1.36945 * 119.99824 * 185.06029 * 10 9 8 12 12 H 1.07997 * 119.99790 * 0.02562 * 11 10 9 13 13 C 1.38809 * 120.00024 * 179.97438 * 11 10 9 14 14 N 1.31616 * 120.00045 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00171 * 359.97438 * 13 11 10 16 16 H 1.48505 * 109.47039 * 90.00247 * 15 13 11 17 17 H 1.48498 * 109.47453 * 209.99951 * 15 13 11 18 18 H 1.48505 * 109.47176 * 330.00272 * 15 13 11 19 19 N 1.46504 * 109.47074 * 299.99846 * 8 7 6 20 20 C 1.34776 * 119.99517 * 304.20001 * 19 8 7 21 21 O 1.21594 * 120.00625 * 354.56753 * 20 19 8 22 22 C 1.47581 * 119.99650 * 174.56191 * 20 19 8 23 23 C 1.38050 * 119.72561 * 179.72901 * 22 20 19 24 24 N 1.34877 * 119.94632 * 179.74012 * 23 22 20 25 25 H 0.97001 * 120.30614 * 180.22728 * 24 23 22 26 26 C 1.34960 * 119.38141 * 0.53880 * 24 23 22 27 27 O 1.21857 * 120.26721 * 179.69973 * 26 24 23 28 28 C 1.41786 * 119.45914 * 359.71036 * 26 24 23 29 29 N 1.30603 * 120.03706 * 0.03085 * 28 26 24 30 30 H 1.09003 * 109.47139 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47581 * 299.99581 * 1 2 3 32 32 H 1.09002 * 109.47315 * 60.00076 * 1 2 3 33 33 H 1.09006 * 109.46792 * 299.99813 * 4 2 1 34 34 H 1.08990 * 109.47396 * 59.99853 * 4 2 1 35 35 H 1.09002 * 109.46805 * 179.97438 * 5 4 2 36 36 H 1.08998 * 109.47047 * 59.99331 * 5 4 2 37 37 H 1.09003 * 109.47324 * 300.00512 * 6 5 4 38 38 H 1.08997 * 109.47375 * 180.02562 * 6 5 4 39 39 H 1.09003 * 109.46644 * 59.99942 * 7 6 5 40 40 H 1.08997 * 109.47333 * 179.97438 * 7 6 5 41 41 H 1.09007 * 109.46768 * 54.97076 * 9 8 7 42 42 H 1.08991 * 109.47143 * 174.97263 * 9 8 7 43 43 H 0.96996 * 120.00497 * 5.05887 * 10 9 8 44 44 H 0.97008 * 120.00271 * 179.97438 * 14 13 11 45 45 H 0.96996 * 119.99783 * 124.20898 * 19 8 7 46 46 H 1.07997 * 120.02252 * 359.97438 * 23 22 20 47 47 H 1.08002 * 119.97794 * 180.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5700 -0.7208 1.2495 6 6 4.0804 -1.4417 0.0003 7 6 3.5704 -0.7205 -1.2490 8 6 2.0404 -0.7209 -1.2493 9 6 1.5304 0.0008 -2.4982 10 7 1.9170 1.4126 -2.4384 11 6 1.4804 2.2835 -3.4009 12 1 0.8507 1.9295 -4.2037 13 6 1.8463 3.6212 -3.3439 14 7 1.4271 4.4581 -4.2692 15 14 2.9337 4.2338 -1.9541 16 1 4.3594 4.1177 -2.3531 17 1 2.6147 5.6552 -1.6656 18 1 2.6916 3.4156 -0.7387 19 7 1.5525 -2.1023 -1.2495 20 6 1.9469 -2.9560 -2.2150 21 8 2.6273 -2.5558 -3.1398 22 6 1.5530 -4.3768 -2.1495 23 6 1.9554 -5.2452 -3.1444 24 7 1.6024 -6.5457 -3.0863 25 1 1.8850 -7.1611 -3.7808 26 6 0.8470 -6.9814 -2.0563 27 8 0.5142 -8.1518 -1.9906 28 6 0.4436 -6.0661 -1.0513 29 7 0.8022 -4.8125 -1.1267 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6766 -0.2075 2.1392 34 1 1.6767 -1.7489 1.2492 35 1 3.9333 -1.2343 2.1397 36 1 3.9329 0.3070 1.2497 37 1 3.7174 -2.4695 0.0000 38 1 5.1704 -1.4418 0.0006 39 1 3.9335 0.3073 -1.2488 40 1 3.9344 -1.2338 -2.1390 41 1 1.9657 -0.4578 -3.3861 42 1 0.4442 -0.0768 -2.5446 43 1 2.4823 1.7306 -1.7171 44 1 1.6824 5.3931 -4.2293 45 1 0.9456 -2.4024 -0.5550 46 1 2.5555 -4.8843 -3.9665 47 1 -0.1606 -6.4058 -0.2231 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495322193.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:31 Heat of formation + Delta-G solvation = -44.729249 kcal Electronic energy + Delta-G solvation = -30345.795050 eV Core-core repulsion = 26335.120372 eV Total energy + Delta-G solvation = -4010.674678 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.86982 -41.78339 -39.50197 -38.41041 -36.48368 -36.35624 -34.78089 -33.59726 -33.34071 -31.82558 -30.58035 -27.95843 -26.63545 -26.47395 -25.67996 -24.36043 -23.21401 -22.49161 -21.82393 -20.35710 -19.90370 -19.75027 -19.29746 -18.31533 -17.25321 -17.16801 -16.69706 -16.40324 -16.34127 -15.87233 -15.72173 -15.50924 -15.29070 -15.12858 -15.07614 -14.83387 -14.58443 -14.27886 -13.79421 -13.64720 -13.34760 -13.23790 -12.97914 -12.87701 -12.83159 -12.74127 -12.71496 -12.51240 -12.29504 -12.11173 -11.86322 -11.76304 -11.45441 -11.24453 -11.15584 -10.90688 -10.73381 -10.45653 -9.95949 -9.40750 -9.24404 -8.01176 -5.33655 -0.56290 0.07868 1.35638 1.40560 1.42873 1.47319 1.77316 2.15529 2.48786 2.63227 2.99792 3.12096 3.30093 3.54755 3.72805 3.77474 3.79717 3.86022 3.90321 4.16957 4.22050 4.25180 4.44814 4.50506 4.55327 4.63565 4.72837 4.82035 4.91355 4.95711 5.00245 5.12152 5.13944 5.16736 5.21222 5.24734 5.27432 5.31763 5.36150 5.43323 5.52561 5.55704 5.68037 5.77013 6.22181 6.32553 6.52166 6.71630 7.08689 7.28037 7.84084 8.05553 9.20909 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016759 B = 0.003444 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.365153 B = 8127.782820 C = 8835.760993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.064 0.936 4 C -0.107 4.107 5 C -0.120 4.120 6 C -0.106 4.106 7 C -0.128 4.128 8 C 0.190 3.810 9 C 0.153 3.847 10 N -0.745 5.745 11 C -0.228 4.228 12 H 0.050 0.950 13 C -0.062 4.062 14 N -0.985 5.985 15 Si 0.949 3.051 16 H -0.280 1.280 17 H -0.293 1.293 18 H -0.246 1.246 19 N -0.685 5.685 20 C 0.584 3.416 21 O -0.562 6.562 22 C -0.096 4.096 23 C 0.201 3.799 24 N -0.570 5.570 25 H 0.441 0.559 26 C 0.477 3.523 27 O -0.556 6.556 28 C 0.043 3.957 29 N -0.376 5.376 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.037 0.963 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.053 0.947 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.052 0.948 40 H 0.068 0.932 41 H 0.022 0.978 42 H 0.022 0.978 43 H 0.366 0.634 44 H 0.258 0.742 45 H 0.416 0.584 46 H 0.212 0.788 47 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.420 -23.507 12.812 26.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 H 0.083 0.917 4 C -0.144 4.144 5 C -0.157 4.157 6 C -0.144 4.144 7 C -0.167 4.167 8 C 0.103 3.897 9 C 0.026 3.974 10 N -0.392 5.392 11 C -0.360 4.360 12 H 0.068 0.932 13 C -0.253 4.253 14 N -0.636 5.636 15 Si 0.776 3.224 16 H -0.206 1.206 17 H -0.220 1.220 18 H -0.171 1.171 19 N -0.337 5.337 20 C 0.371 3.629 21 O -0.442 6.442 22 C -0.219 4.219 23 C 0.064 3.936 24 N -0.202 5.202 25 H 0.284 0.716 26 C 0.274 3.726 27 O -0.434 6.434 28 C -0.147 4.147 29 N -0.091 5.091 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.056 0.944 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.040 0.960 42 H 0.040 0.960 43 H 0.201 0.799 44 H 0.066 0.934 45 H 0.256 0.744 46 H 0.228 0.772 47 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 2.392 -23.160 12.654 26.499 hybrid contribution 0.530 0.202 -0.793 0.975 sum 2.921 -22.958 11.860 26.005 Atomic orbital electron populations 1.21821 0.94212 1.02261 1.01922 1.21339 0.96757 0.99248 0.93651 0.91720 1.21597 0.95508 1.01069 0.96255 1.21571 0.95716 1.00552 0.97871 1.21434 1.00186 0.99250 0.93510 1.21881 0.94022 1.00859 0.99924 1.20257 0.93933 0.80851 0.94647 1.21047 0.96588 0.83242 0.96533 1.42540 1.61521 1.05151 1.29960 1.18972 1.24074 0.89890 1.03015 0.93211 1.25447 1.02614 0.96075 1.01163 1.69886 1.51927 1.04047 1.37763 0.85499 0.78908 0.77496 0.80498 1.20602 1.21995 1.17052 1.45642 1.48897 1.09736 1.29469 1.17548 0.79266 0.84337 0.81783 1.90821 1.40756 1.78035 1.34540 1.20182 1.09729 0.95113 0.96890 1.23417 0.90311 0.82056 0.97827 1.43592 1.42092 1.09927 1.24638 0.71625 1.18954 0.79803 0.90142 0.83720 1.91004 1.56542 1.18747 1.77076 1.25046 1.02673 0.86910 1.00114 1.67650 1.04409 1.17010 1.20044 0.91165 0.91227 0.94365 0.90283 0.90367 0.89945 0.92799 0.91649 0.91698 0.92899 0.91370 0.95963 0.96033 0.79913 0.93354 0.74430 0.77151 0.76775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 8.67 71.98 0.62 -3.07 16 2 C -0.09 -2.42 1.78 -10.79 -0.02 -2.44 16 3 H 0.06 2.07 6.67 -2.39 -0.02 2.06 16 4 C -0.11 -2.03 5.03 30.60 0.15 -1.88 16 5 C -0.12 -2.31 5.92 30.60 0.18 -2.13 16 6 C -0.11 -2.36 5.77 30.60 0.18 -2.18 16 7 C -0.13 -3.87 4.33 30.59 0.13 -3.74 16 8 C 0.19 5.67 0.11 3.60 0.00 5.67 16 9 C 0.15 6.27 4.56 86.38 0.39 6.67 16 10 N -0.74 -35.77 4.80 -343.46 -1.65 -37.42 16 11 C -0.23 -13.48 10.47 84.03 0.88 -12.60 16 12 H 0.05 3.26 8.06 -2.91 -0.02 3.24 16 13 C -0.06 -3.72 5.50 84.86 0.47 -3.25 16 14 N -0.99 -64.43 13.97 21.65 0.30 -64.13 16 15 Si 0.95 45.88 27.73 68.60 1.90 47.79 16 16 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 17 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 18 H -0.25 -10.53 6.52 99.48 0.65 -9.88 16 19 N -0.69 -16.54 3.72 -425.98 -1.59 -18.12 16 20 C 0.58 14.58 7.13 86.71 0.62 15.20 16 21 O -0.56 -17.75 12.57 -4.01 -0.05 -17.80 16 22 C -0.10 -1.71 6.71 41.21 0.28 -1.43 16 23 C 0.20 2.38 10.77 84.18 0.91 3.28 16 24 N -0.57 -5.51 5.28 -316.87 -1.67 -7.19 16 25 H 0.44 1.81 8.92 -92.71 -0.83 0.98 16 26 C 0.48 7.27 7.74 85.09 0.66 7.92 16 27 O -0.56 -12.20 17.95 -4.85 -0.09 -12.29 16 28 C 0.04 0.57 11.23 85.75 0.96 1.53 16 29 N -0.38 -6.01 9.63 -183.46 -1.77 -7.78 16 30 H 0.07 1.45 6.78 -2.39 -0.02 1.43 16 31 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.04 1.24 6.55 -2.39 -0.02 1.23 16 33 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.08 1.25 6.95 -2.39 -0.02 1.24 16 35 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.06 1.36 7.54 -2.39 -0.02 1.35 16 38 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.05 1.78 7.08 -2.39 -0.02 1.77 16 40 H 0.07 2.32 6.06 -2.39 -0.01 2.31 16 41 H 0.02 1.03 6.44 -2.38 -0.02 1.02 16 42 H 0.02 0.92 6.71 -2.39 -0.02 0.91 16 43 H 0.37 16.63 3.25 -92.71 -0.30 16.33 16 44 H 0.26 15.99 8.31 -92.70 -0.77 15.22 16 45 H 0.42 8.33 5.51 -92.71 -0.51 7.82 16 46 H 0.21 1.72 7.58 -2.91 -0.02 1.70 16 47 H 0.22 1.75 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -79.72 363.27 1.15 -78.57 By element: Atomic # 1 Polarization: 31.47 SS G_CDS: -0.66 Total: 30.81 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: 6.41 Total: 7.57 kcal Atomic # 7 Polarization: -128.27 SS G_CDS: -6.37 Total: -134.64 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -0.14 Total: -30.09 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.90 Total: 47.79 kcal Total: -79.72 1.15 -78.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495322193.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.840 kcal (2) G-P(sol) polarization free energy of solvation -79.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds