Wall clock time and date at job start Tue Mar 31 2020 19:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46432 * 2 1 4 4 C 1.53172 * 109.44761 * 240.01053 * 2 1 3 5 5 C 1.53388 * 109.23941 * 170.17287 * 4 2 1 6 6 C 1.51106 * 108.19309 * 48.95917 * 5 4 2 7 7 N 1.29798 * 127.17579 * 164.04672 * 6 5 4 8 8 C 1.35890 * 108.84754 * 180.11150 * 7 6 5 9 9 C 1.47321 * 126.20602 * 179.97438 * 8 7 6 10 10 O 1.21630 * 119.99919 * 180.02562 * 9 8 7 11 11 N 1.34773 * 120.00492 * 0.02562 * 9 8 7 12 12 C 1.46496 * 120.00533 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47573 * 180.02562 * 12 11 9 14 14 O 1.42903 * 112.94324 * 55.33220 * 13 12 11 15 15 C 1.53953 * 113.74481 * 283.74542 * 13 12 11 16 16 N 1.47812 * 86.03416 * 222.08092 * 15 13 12 17 17 C 1.36942 * 134.45395 * 204.63558 * 16 15 13 18 18 H 1.08001 * 119.99789 * 179.86662 * 17 16 15 19 19 C 1.38812 * 119.99779 * 359.87313 * 17 16 15 20 20 N 1.31617 * 120.00220 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99743 * 179.97438 * 19 17 16 22 22 H 1.48490 * 109.47021 * 60.00020 * 21 19 17 23 23 H 1.48504 * 109.46903 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.46889 * 299.99736 * 21 19 17 25 25 C 1.47580 * 91.05359 * 24.54702 * 16 15 13 26 26 C 1.36566 * 107.58102 * 359.96620 * 8 7 6 27 27 N 1.34872 * 106.78732 * 359.96374 * 26 8 7 28 28 C 1.46578 * 127.50128 * 180.15240 * 27 26 8 29 29 H 1.08998 * 109.47125 * 300.01366 * 1 2 3 30 30 H 1.08992 * 109.47033 * 60.02039 * 1 2 3 31 31 H 1.09002 * 109.46714 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.50104 * 50.25918 * 4 2 1 33 33 H 1.08990 * 109.53067 * 290.11663 * 4 2 1 34 34 H 1.08997 * 109.72052 * 289.28231 * 5 4 2 35 35 H 1.09000 * 109.71706 * 168.63093 * 5 4 2 36 36 H 0.97007 * 119.99795 * 0.02562 * 11 9 8 37 37 H 1.09000 * 109.47498 * 300.00598 * 12 11 9 38 38 H 1.09005 * 109.46723 * 60.00135 * 12 11 9 39 39 H 0.96697 * 114.00355 * 309.67210 * 14 13 12 40 40 H 1.09005 * 113.76360 * 336.34641 * 15 13 12 41 41 H 1.08994 * 113.77213 * 107.74165 * 15 13 12 42 42 H 0.97003 * 120.00196 * 179.97438 * 20 19 17 43 43 H 1.08995 * 113.77040 * 221.14823 * 25 16 15 44 44 H 1.09005 * 113.76763 * 89.75070 * 25 16 15 45 45 H 1.07998 * 126.61051 * 179.97438 * 26 8 7 46 46 H 1.09003 * 109.58254 * 282.56124 * 28 27 26 47 47 H 1.08996 * 109.58317 * 42.83691 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7219 -1.2510 5 6 3.5538 -0.5086 -1.3758 6 6 4.1860 -0.8200 -0.0391 7 7 5.4422 -1.0401 0.2022 8 6 5.5980 -1.2842 1.5298 9 6 6.8668 -1.5811 2.2170 10 8 6.8761 -1.7832 3.4164 11 7 8.0174 -1.6289 1.5168 12 6 9.2791 -1.9247 2.2000 13 6 10.4231 -1.9179 1.1841 14 8 10.5053 -0.6970 0.4459 15 6 10.4776 -3.1795 0.3034 16 7 11.9411 -3.1322 0.5051 17 6 13.0215 -3.5962 -0.1970 18 1 14.0210 -3.4245 0.1743 19 6 12.8318 -4.2870 -1.3860 20 7 11.6137 -4.4965 -1.8383 21 14 14.3055 -4.9192 -2.3441 22 1 15.0767 -5.8654 -1.4985 23 1 13.8375 -5.6172 -3.5685 24 1 15.1738 -3.7770 -2.7273 25 6 11.7707 -2.3828 1.7650 26 6 4.3650 -1.2040 2.1115 27 7 3.4887 -0.9131 1.1284 28 6 2.0406 -0.7220 1.2515 29 1 -0.3633 0.5140 0.8898 30 1 -0.3633 0.5135 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.5417 -0.3184 -2.1325 33 1 1.8282 -1.7879 -1.1683 34 1 3.7581 0.5271 -1.6469 35 1 3.9575 -1.1753 -2.1378 36 1 8.0101 -1.4673 0.5603 37 1 9.4658 -1.1680 2.9620 38 1 9.2161 -2.9061 2.6703 39 1 9.6667 -0.4168 0.0545 40 1 9.9999 -4.0500 0.7531 41 1 10.1693 -3.0089 -0.7280 42 1 11.4812 -4.9790 -2.6694 43 1 12.4930 -1.5775 1.8983 44 1 11.6738 -3.0190 2.6449 45 1 4.1357 -1.3461 3.1572 46 1 1.5504 -1.6916 1.3395 47 1 1.8252 -0.1220 2.1356 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500863345.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:15 Heat of formation + Delta-G solvation = 26.245955 kcal Electronic energy + Delta-G solvation = -28536.147931 eV Core-core repulsion = 24528.550969 eV Total energy + Delta-G solvation = -4007.596962 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.63160 -39.52723 -38.40238 -37.52917 -34.73184 -33.95109 -33.59175 -32.03633 -31.83026 -29.18775 -28.47467 -27.07590 -25.81804 -24.88727 -24.33091 -22.95149 -21.95142 -21.48784 -20.03138 -19.45522 -19.18822 -18.02241 -16.83660 -16.47424 -16.40581 -15.84623 -15.43069 -15.28259 -14.98445 -14.78427 -14.61297 -14.19612 -14.12732 -13.86612 -13.83002 -13.58136 -13.24919 -13.10876 -12.90424 -12.67499 -12.56778 -12.14184 -12.02528 -11.67841 -11.60981 -11.43947 -11.32977 -10.97982 -10.83930 -10.63900 -10.39748 -10.38021 -10.03649 -9.93177 -9.67108 -9.41282 -9.08050 -8.82916 -8.73261 -8.52370 -6.80933 -5.68475 -3.00165 1.50772 2.28260 2.31853 3.41893 3.46320 3.49282 3.50837 3.63889 3.77373 3.94146 4.02656 4.11217 4.51210 4.54137 4.63439 4.66355 4.75207 4.83795 4.85300 4.93586 4.97220 5.12364 5.16529 5.28890 5.31821 5.35240 5.38398 5.42883 5.50032 5.55739 5.66584 5.67849 5.87954 5.88703 6.14770 6.32987 6.41032 6.55439 6.65731 6.70249 6.78963 7.13073 7.28311 7.56763 7.59734 7.85494 8.04339 8.27065 8.44514 9.11605 9.78228 10.65461 11.48740 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018128 B = 0.002337 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.210457 B =11980.506336 C =13076.625964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 H 0.085 0.915 4 C -0.122 4.122 5 C -0.034 4.034 6 C 0.210 3.790 7 N -0.453 5.453 8 C -0.059 4.059 9 C 0.604 3.396 10 O -0.551 6.551 11 N -0.709 5.709 12 C 0.103 3.897 13 C 0.065 3.935 14 O -0.528 6.528 15 C 0.145 3.855 16 N -0.603 5.603 17 C -0.218 4.218 18 H 0.080 0.920 19 C -0.009 4.009 20 N -0.922 5.922 21 Si 0.913 3.087 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.137 3.863 26 C 0.034 3.966 27 N -0.455 5.455 28 C 0.106 3.894 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.407 0.593 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.364 0.636 40 H 0.034 0.966 41 H 0.078 0.922 42 H 0.253 0.747 43 H 0.055 0.945 44 H 0.050 0.950 45 H 0.188 0.812 46 H 0.088 0.912 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.324 10.605 3.906 29.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.126 4.126 3 H 0.103 0.897 4 C -0.160 4.160 5 C -0.073 4.073 6 C -0.054 4.054 7 N -0.173 5.173 8 C -0.189 4.189 9 C 0.390 3.610 10 O -0.429 6.429 11 N -0.360 5.360 12 C -0.022 4.022 13 C 0.022 3.978 14 O -0.332 6.332 15 C 0.019 3.981 16 N -0.329 5.329 17 C -0.345 4.345 18 H 0.098 0.902 19 C -0.206 4.206 20 N -0.570 5.570 21 Si 0.744 3.256 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.010 3.990 26 C -0.105 4.105 27 N -0.137 5.137 28 C -0.016 4.016 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.110 0.890 35 H 0.119 0.881 36 H 0.243 0.757 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.211 0.789 40 H 0.052 0.948 41 H 0.097 0.903 42 H 0.063 0.937 43 H 0.073 0.927 44 H 0.067 0.933 45 H 0.205 0.795 46 H 0.106 0.894 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -25.948 10.258 4.124 28.205 hybrid contribution -0.488 -0.466 -0.410 0.790 sum -26.436 9.792 3.713 28.435 Atomic orbital electron populations 1.21769 0.93071 1.02651 1.02778 1.21492 0.97058 1.00409 0.93606 0.89701 1.21789 0.94739 1.01468 0.97980 1.20256 0.93635 1.03688 0.89752 1.23517 0.87076 1.05265 0.89505 1.70412 1.15641 1.16956 1.14244 1.20622 0.93864 1.13843 0.90524 1.16846 0.82013 0.76409 0.85709 1.90778 1.86708 1.51409 1.14035 1.45713 1.06647 1.71001 1.12614 1.22065 0.82175 1.01964 0.95958 1.23719 0.94527 0.87010 0.92565 1.86578 1.35949 1.39581 1.71057 1.22923 0.85303 0.91005 0.98833 1.45703 1.01981 1.64971 1.20228 1.18945 0.85229 1.28868 1.01501 0.90224 1.24772 0.96740 1.00979 0.98068 1.69800 1.18931 1.45831 1.22402 0.86177 0.81587 0.78561 0.79294 1.21241 1.21617 1.21099 1.22543 0.91814 0.93786 0.90864 1.22400 0.88910 1.04001 0.95202 1.45309 1.08503 1.51912 1.08000 1.22167 0.76815 1.02301 1.00330 0.92071 0.91444 0.92035 0.89679 0.90942 0.88982 0.88148 0.75701 0.91119 0.90285 0.78938 0.94842 0.90349 0.93684 0.92708 0.93274 0.79538 0.89365 0.88887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.31 9.17 37.16 0.34 0.03 16 2 C -0.11 -0.40 2.73 -90.41 -0.25 -0.64 16 3 H 0.08 0.35 8.11 -51.93 -0.42 -0.07 16 4 C -0.12 -0.52 5.25 -26.44 -0.14 -0.66 16 5 C -0.03 -0.24 6.33 -27.48 -0.17 -0.41 16 6 C 0.21 2.25 7.64 -154.63 -1.18 1.07 16 7 N -0.45 -6.35 11.00 -7.01 -0.08 -6.43 16 8 C -0.06 -0.86 6.98 -82.98 -0.58 -1.44 16 9 C 0.60 10.07 7.81 -12.57 -0.10 9.97 16 10 O -0.55 -10.37 16.88 5.25 0.09 -10.28 16 11 N -0.71 -11.45 5.33 -61.42 -0.33 -11.78 16 12 C 0.10 1.76 5.26 -4.05 -0.02 1.74 16 13 C 0.06 1.29 1.49 -89.69 -0.13 1.15 16 14 O -0.53 -10.55 13.50 -35.23 -0.48 -11.03 16 15 C 0.15 3.53 6.92 -2.83 -0.02 3.51 16 16 N -0.60 -16.26 3.70 -177.58 -0.66 -16.92 16 17 C -0.22 -6.39 10.70 -15.06 -0.16 -6.55 16 18 H 0.08 2.24 7.83 -52.49 -0.41 1.83 16 19 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 20 N -0.92 -28.18 11.39 55.49 0.63 -27.55 16 21 Si 0.91 22.90 29.55 -169.99 -5.02 17.88 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 25 C 0.14 2.98 8.34 -2.97 -0.02 2.95 16 26 C 0.03 0.39 11.32 -16.82 -0.19 0.20 16 27 N -0.46 -4.17 3.11 -113.42 -0.35 -4.52 16 28 C 0.11 0.52 6.25 -3.88 -0.02 0.50 16 29 H 0.06 0.11 8.14 -51.93 -0.42 -0.32 16 30 H 0.07 0.12 8.14 -51.93 -0.42 -0.30 16 31 H 0.06 0.12 8.14 -51.93 -0.42 -0.30 16 32 H 0.08 0.24 8.12 -51.93 -0.42 -0.19 16 33 H 0.07 0.34 8.12 -51.93 -0.42 -0.08 16 34 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.41 6.33 7.13 -40.82 -0.29 6.04 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.08 1.39 8.09 -51.93 -0.42 0.97 16 39 H 0.36 5.87 7.73 45.56 0.35 6.23 16 40 H 0.03 0.83 8.06 -51.93 -0.42 0.41 16 41 H 0.08 2.11 7.17 -51.93 -0.37 1.74 16 42 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 44 H 0.05 0.98 8.10 -51.93 -0.42 0.56 16 45 H 0.19 1.75 8.06 -52.49 -0.42 1.32 16 46 H 0.09 0.36 8.12 -51.93 -0.42 -0.07 16 47 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 385.57 15.07 5.81 5.81 Total: -1.00 -37.41 385.57 -9.74 -47.15 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -6.61 Total: 6.62 kcal Atomic # 6 Polarization: 13.80 SS G_CDS: -2.75 Total: 11.05 kcal Atomic # 7 Polarization: -66.42 SS G_CDS: -0.78 Total: -67.20 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.39 Total: -21.31 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -37.41 -9.74 -47.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500863345.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.393 kcal (2) G-P(sol) polarization free energy of solvation -37.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds