Wall clock time and date at job start Tue Mar 31 2020 19:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46432 * 2 1 4 4 C 1.53172 * 109.44761 * 240.01053 * 2 1 3 5 5 C 1.53388 * 109.23941 * 170.17287 * 4 2 1 6 6 C 1.51106 * 108.19309 * 48.95917 * 5 4 2 7 7 N 1.29798 * 127.17579 * 164.04672 * 6 5 4 8 8 C 1.35890 * 108.84754 * 180.11150 * 7 6 5 9 9 C 1.47321 * 126.20602 * 179.97438 * 8 7 6 10 10 O 1.21630 * 119.99919 * 180.02562 * 9 8 7 11 11 N 1.34773 * 120.00492 * 0.02562 * 9 8 7 12 12 C 1.46496 * 120.00533 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47573 * 180.02562 * 12 11 9 14 14 O 1.42903 * 112.94324 * 55.33220 * 13 12 11 15 15 C 1.53953 * 113.74481 * 283.74542 * 13 12 11 16 16 N 1.47812 * 86.03416 * 222.08092 * 15 13 12 17 17 C 1.36942 * 134.45395 * 204.63558 * 16 15 13 18 18 H 1.08001 * 119.99789 * 179.86662 * 17 16 15 19 19 C 1.38812 * 119.99779 * 359.87313 * 17 16 15 20 20 N 1.31617 * 120.00220 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99743 * 179.97438 * 19 17 16 22 22 H 1.48490 * 109.47021 * 60.00020 * 21 19 17 23 23 H 1.48504 * 109.46903 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.46889 * 299.99736 * 21 19 17 25 25 C 1.47580 * 91.05359 * 24.54702 * 16 15 13 26 26 C 1.36566 * 107.58102 * 359.96620 * 8 7 6 27 27 N 1.34872 * 106.78732 * 359.96374 * 26 8 7 28 28 C 1.46578 * 127.50128 * 180.15240 * 27 26 8 29 29 H 1.08998 * 109.47125 * 300.01366 * 1 2 3 30 30 H 1.08992 * 109.47033 * 60.02039 * 1 2 3 31 31 H 1.09002 * 109.46714 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.50104 * 50.25918 * 4 2 1 33 33 H 1.08990 * 109.53067 * 290.11663 * 4 2 1 34 34 H 1.08997 * 109.72052 * 289.28231 * 5 4 2 35 35 H 1.09000 * 109.71706 * 168.63093 * 5 4 2 36 36 H 0.97007 * 119.99795 * 0.02562 * 11 9 8 37 37 H 1.09000 * 109.47498 * 300.00598 * 12 11 9 38 38 H 1.09005 * 109.46723 * 60.00135 * 12 11 9 39 39 H 0.96697 * 114.00355 * 309.67210 * 14 13 12 40 40 H 1.09005 * 113.76360 * 336.34641 * 15 13 12 41 41 H 1.08994 * 113.77213 * 107.74165 * 15 13 12 42 42 H 0.97003 * 120.00196 * 179.97438 * 20 19 17 43 43 H 1.08995 * 113.77040 * 221.14823 * 25 16 15 44 44 H 1.09005 * 113.76763 * 89.75070 * 25 16 15 45 45 H 1.07998 * 126.61051 * 179.97438 * 26 8 7 46 46 H 1.09003 * 109.58254 * 282.56124 * 28 27 26 47 47 H 1.08996 * 109.58317 * 42.83691 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7219 -1.2510 5 6 3.5538 -0.5086 -1.3758 6 6 4.1860 -0.8200 -0.0391 7 7 5.4422 -1.0401 0.2022 8 6 5.5980 -1.2842 1.5298 9 6 6.8668 -1.5811 2.2170 10 8 6.8761 -1.7832 3.4164 11 7 8.0174 -1.6289 1.5168 12 6 9.2791 -1.9247 2.2000 13 6 10.4231 -1.9179 1.1841 14 8 10.5053 -0.6970 0.4459 15 6 10.4776 -3.1795 0.3034 16 7 11.9411 -3.1322 0.5051 17 6 13.0215 -3.5962 -0.1970 18 1 14.0210 -3.4245 0.1743 19 6 12.8318 -4.2870 -1.3860 20 7 11.6137 -4.4965 -1.8383 21 14 14.3055 -4.9192 -2.3441 22 1 15.0767 -5.8654 -1.4985 23 1 13.8375 -5.6172 -3.5685 24 1 15.1738 -3.7770 -2.7273 25 6 11.7707 -2.3828 1.7650 26 6 4.3650 -1.2040 2.1115 27 7 3.4887 -0.9131 1.1284 28 6 2.0406 -0.7220 1.2515 29 1 -0.3633 0.5140 0.8898 30 1 -0.3633 0.5135 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.5417 -0.3184 -2.1325 33 1 1.8282 -1.7879 -1.1683 34 1 3.7581 0.5271 -1.6469 35 1 3.9575 -1.1753 -2.1378 36 1 8.0101 -1.4673 0.5603 37 1 9.4658 -1.1680 2.9620 38 1 9.2161 -2.9061 2.6703 39 1 9.6667 -0.4168 0.0545 40 1 9.9999 -4.0500 0.7531 41 1 10.1693 -3.0089 -0.7280 42 1 11.4812 -4.9790 -2.6694 43 1 12.4930 -1.5775 1.8983 44 1 11.6738 -3.0190 2.6449 45 1 4.1357 -1.3461 3.1572 46 1 1.5504 -1.6916 1.3395 47 1 1.8252 -0.1220 2.1356 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500863345.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:14 Heat of formation + Delta-G solvation = -1.814902 kcal Electronic energy + Delta-G solvation = -28537.364741 eV Core-core repulsion = 24528.550969 eV Total energy + Delta-G solvation = -4008.813772 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.44508 -41.01666 -39.89317 -38.07302 -36.46959 -35.28986 -34.40050 -33.99571 -32.55497 -30.42650 -29.71530 -28.15045 -27.09676 -26.71792 -24.91502 -24.22971 -23.24938 -22.32939 -21.27160 -20.88256 -20.01927 -19.16842 -18.66695 -17.68909 -17.25965 -17.15217 -16.95985 -16.38755 -16.27709 -15.75660 -15.56807 -15.49427 -15.39461 -14.96818 -14.82306 -14.65272 -14.52875 -14.34726 -14.06038 -13.88608 -13.45955 -13.29459 -13.10727 -12.95537 -12.80147 -12.55391 -12.42766 -12.26799 -12.01227 -11.81268 -11.78590 -11.68092 -11.49265 -11.30492 -11.03688 -10.96183 -10.72986 -10.70867 -10.18262 -9.46754 -8.94258 -7.90124 -5.23834 0.53730 1.34896 1.44294 1.49087 1.54800 1.61701 2.19466 2.46818 2.49121 3.03959 3.13720 3.28365 3.34549 3.44511 3.58842 3.62611 3.71284 3.88121 3.95370 4.07838 4.26880 4.35595 4.38773 4.40445 4.46224 4.57777 4.67596 4.71370 4.73313 4.77774 4.90947 4.94714 4.95153 5.01222 5.11894 5.15969 5.16214 5.29529 5.31313 5.33476 5.42632 5.44406 5.48350 5.91011 6.04044 6.40804 6.76075 6.85387 6.90220 7.17708 7.59120 8.52874 9.26493 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018128 B = 0.002337 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.210457 B =11980.506336 C =13076.625964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.101 4.101 3 H 0.083 0.917 4 C -0.116 4.116 5 C -0.036 4.036 6 C 0.209 3.791 7 N -0.491 5.491 8 C -0.100 4.100 9 C 0.603 3.397 10 O -0.578 6.578 11 N -0.708 5.708 12 C 0.118 3.882 13 C 0.096 3.904 14 O -0.540 6.540 15 C 0.145 3.855 16 N -0.635 5.635 17 C -0.235 4.235 18 H 0.084 0.916 19 C -0.070 4.070 20 N -0.954 5.954 21 Si 0.983 3.017 22 H -0.276 1.276 23 H -0.293 1.293 24 H -0.277 1.277 25 C 0.133 3.867 26 C 0.048 3.952 27 N -0.447 5.447 28 C 0.096 3.904 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.105 0.895 33 H 0.069 0.931 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.409 0.591 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.381 0.619 40 H 0.025 0.975 41 H 0.046 0.954 42 H 0.248 0.752 43 H 0.060 0.940 44 H 0.075 0.925 45 H 0.207 0.793 46 H 0.102 0.898 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.159 11.556 4.226 31.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.120 4.120 3 H 0.101 0.899 4 C -0.154 4.154 5 C -0.075 4.075 6 C -0.056 4.056 7 N -0.211 5.211 8 C -0.228 4.228 9 C 0.391 3.609 10 O -0.459 6.459 11 N -0.358 5.358 12 C -0.007 4.007 13 C 0.053 3.947 14 O -0.347 6.347 15 C 0.019 3.981 16 N -0.362 5.362 17 C -0.363 4.363 18 H 0.102 0.898 19 C -0.263 4.263 20 N -0.603 5.603 21 Si 0.811 3.189 22 H -0.202 1.202 23 H -0.219 1.219 24 H -0.203 1.203 25 C 0.008 3.992 26 C -0.094 4.094 27 N -0.127 5.127 28 C -0.024 4.024 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.124 0.876 33 H 0.088 0.912 34 H 0.120 0.880 35 H 0.114 0.886 36 H 0.245 0.755 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.230 0.770 40 H 0.042 0.958 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.078 0.922 44 H 0.093 0.907 45 H 0.223 0.777 46 H 0.120 0.880 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -27.817 11.241 4.456 30.331 hybrid contribution -0.015 -0.710 -0.504 0.871 sum -27.832 10.532 3.951 30.019 Atomic orbital electron populations 1.21736 0.91499 1.03090 1.03439 1.21478 0.98137 0.99881 0.92520 0.89906 1.21797 0.92729 1.01600 0.99300 1.20458 0.95283 1.04113 0.87629 1.24200 0.86557 1.03690 0.91157 1.70334 1.17836 1.18633 1.14277 1.20471 0.93904 1.17146 0.91321 1.17156 0.82637 0.75587 0.85471 1.90744 1.87202 1.52890 1.15075 1.45657 1.06429 1.71104 1.12654 1.21803 0.81560 1.02302 0.95004 1.23191 0.94831 0.85121 0.91579 1.86529 1.37667 1.39117 1.71337 1.22826 0.84395 0.93032 0.97850 1.46086 1.02354 1.65462 1.22263 1.19373 0.86364 1.28559 1.02035 0.89805 1.25680 0.99640 1.01722 0.99235 1.70003 1.20955 1.46716 1.22575 0.85085 0.78223 0.78048 0.77551 1.20160 1.21865 1.20284 1.22780 0.92742 0.93708 0.89984 1.22679 0.88348 1.02069 0.96258 1.45577 1.09963 1.50282 1.06907 1.22598 0.74129 1.03716 1.01938 0.91420 0.90841 0.91698 0.87645 0.91203 0.87964 0.88576 0.75481 0.89793 0.90583 0.77017 0.95751 0.93597 0.94282 0.92164 0.90749 0.77658 0.87987 0.87002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.16 9.17 71.98 0.66 0.50 16 2 C -0.10 -0.47 2.73 -10.66 -0.03 -0.50 16 3 H 0.08 0.46 8.11 -2.39 -0.02 0.44 16 4 C -0.12 -0.72 5.25 30.78 0.16 -0.56 16 5 C -0.04 -0.45 6.33 30.11 0.19 -0.26 16 6 C 0.21 4.33 7.64 138.05 1.05 5.38 16 7 N -0.49 -13.92 11.00 -176.08 -1.94 -15.86 16 8 C -0.10 -2.94 6.98 40.52 0.28 -2.65 16 9 C 0.60 20.33 7.81 86.63 0.68 21.01 16 10 O -0.58 -21.82 16.88 -4.13 -0.07 -21.89 16 11 N -0.71 -23.14 5.33 -466.47 -2.49 -25.63 16 12 C 0.12 4.01 5.26 86.38 0.45 4.46 16 13 C 0.10 3.81 1.49 -10.13 -0.02 3.80 16 14 O -0.54 -21.50 13.50 -148.98 -2.01 -23.51 16 15 C 0.14 7.26 6.92 86.44 0.60 7.86 16 16 N -0.64 -34.74 3.70 -719.58 -2.67 -37.40 16 17 C -0.24 -13.96 10.70 84.03 0.90 -13.06 16 18 H 0.08 4.74 7.83 -2.91 -0.02 4.72 16 19 C -0.07 -4.18 5.50 84.86 0.47 -3.72 16 20 N -0.95 -59.89 11.39 21.65 0.25 -59.65 16 21 Si 0.98 47.66 29.55 68.60 2.03 49.69 16 22 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 23 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 24 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 25 C 0.13 5.74 8.34 86.49 0.72 6.46 16 26 C 0.05 1.05 11.32 83.84 0.95 2.00 16 27 N -0.45 -7.49 3.11 -512.76 -1.60 -9.09 16 28 C 0.10 0.69 6.25 86.44 0.54 1.23 16 29 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 30 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 31 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 32 H 0.11 0.26 8.12 -2.38 -0.02 0.24 16 33 H 0.07 0.50 8.12 -2.39 -0.02 0.48 16 34 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.41 13.09 7.13 -92.70 -0.66 12.43 16 37 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 38 H 0.08 2.66 8.09 -2.38 -0.02 2.64 16 39 H 0.38 12.28 7.73 -74.06 -0.57 11.71 16 40 H 0.02 1.26 8.06 -2.38 -0.02 1.25 16 41 H 0.05 2.58 7.17 -2.39 -0.02 2.56 16 42 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 43 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 44 H 0.08 2.87 8.10 -2.38 -0.02 2.85 16 45 H 0.21 3.53 8.06 -2.91 -0.02 3.51 16 46 H 0.10 0.51 8.12 -2.39 -0.02 0.49 16 47 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 Total: -1.00 -82.42 385.57 -1.12 -83.54 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: -0.24 Total: 27.85 kcal Atomic # 6 Polarization: 24.34 SS G_CDS: 7.61 Total: 31.96 kcal Atomic # 7 Polarization: -139.19 SS G_CDS: -8.44 Total: -147.63 kcal Atomic # 8 Polarization: -43.32 SS G_CDS: -2.08 Total: -45.41 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 2.03 Total: 49.69 kcal Total: -82.42 -1.12 -83.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500863345.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.725 kcal (2) G-P(sol) polarization free energy of solvation -82.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds