Wall clock time and date at job start Tue Mar 31 2020 19:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47331 * 2 1 4 4 C 1.52999 * 109.47152 * 119.99957 * 2 1 3 5 5 C 1.53001 * 109.47152 * 179.97438 * 4 2 1 6 6 C 1.53006 * 109.47049 * 299.99835 * 5 4 2 7 7 C 1.52999 * 109.47008 * 60.00078 * 6 5 4 8 8 C 1.53001 * 109.47152 * 299.99860 * 7 6 5 9 9 C 1.52999 * 109.47152 * 179.97438 * 8 7 6 10 10 N 1.46499 * 109.47094 * 64.56434 * 9 8 7 11 11 C 1.36931 * 119.99899 * 185.75257 * 10 9 8 12 12 H 1.08000 * 120.00305 * 359.97438 * 11 10 9 13 13 C 1.38819 * 119.99945 * 180.02562 * 11 10 9 14 14 N 1.31618 * 119.99656 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99752 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47242 * 90.00116 * 15 13 11 17 17 H 1.48503 * 109.46696 * 209.99495 * 15 13 11 18 18 H 1.48498 * 109.47223 * 329.99242 * 15 13 11 19 19 N 1.46501 * 109.47181 * 300.00451 * 8 7 6 20 20 C 1.34774 * 119.99811 * 194.08336 * 19 8 7 21 21 O 1.21517 * 120.00436 * 356.43022 * 20 19 8 22 22 C 1.48154 * 120.00198 * 176.43107 * 20 19 8 23 23 C 1.39896 * 121.11591 * 359.97438 * 22 20 19 24 24 N 1.31772 * 119.78000 * 180.02562 * 23 22 20 25 25 N 1.28272 * 122.42287 * 359.97438 * 24 23 22 26 26 C 1.32272 * 122.43590 * 359.97438 * 25 24 23 27 27 O 1.35702 * 120.08410 * 179.97438 * 26 25 24 28 28 C 1.39243 * 119.83978 * 359.72556 * 26 25 24 29 29 H 1.08998 * 109.46877 * 306.90362 * 1 2 3 30 30 H 1.09000 * 109.47344 * 66.90291 * 1 2 3 31 31 H 1.08996 * 109.47286 * 186.90402 * 1 2 3 32 32 H 1.09008 * 109.47298 * 300.00068 * 4 2 1 33 33 H 1.08998 * 109.47462 * 59.99664 * 4 2 1 34 34 H 1.09000 * 109.47331 * 60.00043 * 5 4 2 35 35 H 1.09005 * 109.46758 * 179.97438 * 5 4 2 36 36 H 1.08994 * 109.46605 * 180.02562 * 6 5 4 37 37 H 1.08998 * 109.46849 * 299.99898 * 6 5 4 38 38 H 1.08999 * 109.47112 * 59.99505 * 7 6 5 39 39 H 1.08996 * 109.46899 * 180.02562 * 7 6 5 40 40 H 1.09007 * 109.46702 * 184.56402 * 9 8 7 41 41 H 1.08997 * 109.46990 * 304.55846 * 9 8 7 42 42 H 0.97001 * 119.99636 * 5.74684 * 10 9 8 43 43 H 0.97003 * 119.99467 * 180.02562 * 14 13 11 44 44 H 0.96997 * 120.00303 * 14.07518 * 19 8 7 45 45 H 1.07996 * 120.10909 * 359.97438 * 23 22 20 46 46 H 0.96706 * 113.99747 * 90.00165 * 27 26 25 47 47 H 1.07996 * 121.12191 * 180.30096 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5700 -0.7218 1.2489 6 6 4.0795 -1.4435 -0.0004 7 6 3.5695 -0.7223 -1.2496 8 6 2.0395 -0.7217 -1.2493 9 6 1.5295 0.0001 -2.4982 10 7 1.9255 -0.7509 -3.6921 11 6 1.6818 -0.2355 -4.9371 12 1 1.1974 0.7244 -5.0390 13 6 2.0566 -0.9473 -6.0685 14 7 2.6465 -2.1173 -5.9443 15 14 1.7236 -0.2446 -7.7669 16 1 2.8847 0.5734 -8.2006 17 1 1.5135 -1.3555 -8.7297 18 1 0.5078 0.6069 -7.7206 19 7 1.5506 -2.1027 -1.2488 20 6 0.2585 -2.3602 -1.5325 21 8 -0.5158 -1.4436 -1.7249 22 6 -0.2181 -3.7609 -1.6099 23 6 0.6530 -4.8339 -1.3932 24 7 0.2010 -6.0694 -1.4690 25 7 -1.0243 -6.3383 -1.7370 26 6 -1.9258 -5.3956 -1.9568 27 8 -3.2096 -5.7343 -2.2370 28 6 -1.5554 -4.0548 -1.8948 29 1 -0.3633 0.6171 0.8218 30 1 -0.3634 0.4031 -0.9453 31 1 -0.3633 -1.0202 0.1235 32 1 1.6767 -0.2074 2.1393 33 1 1.6767 -1.7489 1.2493 34 1 3.9338 0.3057 1.2487 35 1 3.9333 -1.2353 2.1392 36 1 5.1694 -1.4442 -0.0003 37 1 3.7158 -2.4710 0.0000 38 1 3.9331 0.3053 -1.2498 39 1 3.9321 -1.2366 -2.1395 40 1 0.4425 0.0718 -2.4579 41 1 1.9583 1.0013 -2.5397 42 1 2.3603 -1.6131 -3.6006 43 1 2.9087 -2.6145 -6.7349 44 1 2.1569 -2.8318 -1.0445 45 1 1.6925 -4.6504 -1.1653 46 1 -3.7743 -5.8156 -1.4562 47 1 -2.2754 -3.2683 -2.0660 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568040581.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:09 Heat of formation + Delta-G solvation = 9.354289 kcal Electronic energy + Delta-G solvation = -30839.387223 eV Core-core repulsion = 26831.057784 eV Total energy + Delta-G solvation = -4008.329440 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.50977 -40.64217 -38.01455 -37.65443 -34.71014 -33.82313 -33.13531 -32.36998 -31.61879 -31.07069 -29.45220 -26.51615 -25.47846 -25.07487 -24.55649 -23.00894 -21.56255 -21.26467 -20.54940 -19.18872 -19.06831 -18.14657 -17.33505 -17.17021 -16.43521 -15.92527 -15.76477 -15.26133 -14.76160 -14.42688 -14.37033 -14.08881 -13.86925 -13.73980 -13.59142 -13.41379 -13.10057 -12.61478 -12.44919 -12.35556 -11.87077 -11.84367 -11.59870 -11.50458 -11.39811 -11.28231 -10.93904 -10.84939 -10.77808 -10.52154 -10.25580 -10.12746 -10.03247 -10.00762 -9.87795 -9.73129 -9.64982 -9.32952 -8.73995 -8.55086 -6.82400 -5.74518 -3.00091 0.25578 0.63088 2.76693 3.09484 3.23171 3.44785 3.50681 3.52077 3.60838 4.09590 4.29357 4.55050 4.60314 4.71917 4.78082 4.79136 4.81535 4.87803 5.16336 5.19404 5.38786 5.52420 5.53716 5.57198 5.61695 5.65875 5.67307 5.70976 5.80380 5.91093 5.99727 6.05679 6.14258 6.17793 6.21665 6.29686 6.33659 6.37649 6.54615 6.62119 6.69784 6.91449 7.10112 7.13522 7.67773 7.73816 8.36631 8.44949 8.47259 9.56518 10.14315 10.49357 11.48534 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.007305 B = 0.005891 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3832.332831 B = 4751.556677 C = 7227.667043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.093 4.093 3 H 0.075 0.925 4 C -0.111 4.111 5 C -0.119 4.119 6 C -0.121 4.121 7 C -0.120 4.120 8 C 0.181 3.819 9 C 0.130 3.870 10 N -0.724 5.724 11 C -0.229 4.229 12 H 0.068 0.932 13 C -0.016 4.016 14 N -0.935 5.935 15 Si 0.904 3.096 16 H -0.291 1.291 17 H -0.293 1.293 18 H -0.283 1.283 19 N -0.699 5.699 20 C 0.561 3.439 21 O -0.494 6.494 22 C -0.099 4.099 23 C 0.060 3.940 24 N -0.216 5.216 25 N -0.250 5.250 26 C 0.255 3.745 27 O -0.470 6.470 28 C -0.078 4.078 29 H 0.030 0.970 30 H 0.081 0.919 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.024 0.976 42 H 0.381 0.619 43 H 0.253 0.747 44 H 0.394 0.606 45 H 0.177 0.823 46 H 0.404 0.596 47 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.998 -1.688 18.234 18.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.113 4.113 3 H 0.094 0.906 4 C -0.149 4.149 5 C -0.157 4.157 6 C -0.158 4.158 7 C -0.158 4.158 8 C 0.095 3.905 9 C 0.003 3.997 10 N -0.368 5.368 11 C -0.360 4.360 12 H 0.086 0.914 13 C -0.211 4.211 14 N -0.585 5.585 15 Si 0.735 3.265 16 H -0.218 1.218 17 H -0.219 1.219 18 H -0.209 1.209 19 N -0.351 5.351 20 C 0.346 3.654 21 O -0.368 6.368 22 C -0.113 4.113 23 C -0.106 4.106 24 N -0.059 5.059 25 N -0.102 5.102 26 C 0.069 3.931 27 O -0.275 6.275 28 C -0.109 4.109 29 H 0.049 0.951 30 H 0.100 0.900 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.080 0.920 41 H 0.041 0.959 42 H 0.215 0.785 43 H 0.063 0.937 44 H 0.230 0.770 45 H 0.194 0.806 46 H 0.262 0.738 47 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -3.197 -2.477 17.451 17.913 hybrid contribution -0.132 1.175 -0.736 1.393 sum -3.329 -1.302 16.714 17.092 Atomic orbital electron populations 1.22301 0.93932 1.01758 1.01790 1.21502 0.96851 0.99221 0.93709 0.90617 1.21566 0.95184 1.00665 0.97438 1.21557 0.95818 1.00756 0.97551 1.21578 1.00453 0.99040 0.94760 1.21800 0.93272 1.02314 0.98414 1.20709 0.93520 0.80434 0.95795 1.21351 0.99944 0.93595 0.84823 1.42201 1.72107 1.22314 1.00225 1.19200 1.31523 1.01762 0.83557 0.91397 1.24672 1.01843 0.96981 0.97605 1.69637 1.46833 1.13761 1.28233 0.86228 0.77758 0.77717 0.84761 1.21844 1.21912 1.20872 1.45750 1.09378 1.09402 1.70615 1.17518 0.83046 0.86605 0.78238 1.90800 1.55386 1.43952 1.46707 1.21426 0.94207 0.96320 0.99387 1.24540 1.01538 0.89452 0.95020 1.73012 1.05203 1.18911 1.08761 1.72740 0.97395 1.31510 1.08597 1.20758 0.87777 0.89034 0.95507 1.84847 1.15519 1.91459 1.35674 1.22752 0.96913 0.97513 0.93759 0.95141 0.90031 0.92469 0.92382 0.92231 0.91996 0.92406 0.91728 0.92465 0.90435 0.89845 0.91975 0.95855 0.78544 0.93707 0.77046 0.80601 0.73756 0.81494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 7.30 37.16 0.27 -1.66 16 2 C -0.09 -1.16 2.07 -90.62 -0.19 -1.35 16 3 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 4 C -0.11 -1.13 5.04 -26.73 -0.13 -1.26 16 5 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 6 C -0.12 -1.22 5.75 -26.73 -0.15 -1.37 16 7 C -0.12 -1.61 4.71 -26.73 -0.13 -1.73 16 8 C 0.18 2.62 0.32 -131.82 -0.04 2.58 16 9 C 0.13 2.56 4.39 -4.04 -0.02 2.54 16 10 N -0.72 -17.51 5.02 -59.91 -0.30 -17.81 16 11 C -0.23 -6.38 9.99 -15.06 -0.15 -6.53 16 12 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 13 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 14 N -0.94 -28.00 13.06 55.49 0.72 -27.28 16 15 Si 0.90 22.82 29.55 -169.99 -5.02 17.80 16 16 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 17 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 18 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 19 N -0.70 -9.54 3.51 -48.44 -0.17 -9.71 16 20 C 0.56 8.66 5.99 -12.19 -0.07 8.58 16 21 O -0.49 -8.78 9.82 5.35 0.05 -8.72 16 22 C -0.10 -1.40 5.92 -104.60 -0.62 -2.02 16 23 C 0.06 0.78 10.84 -16.96 -0.18 0.60 16 24 N -0.22 -3.18 11.48 30.79 0.35 -2.83 16 25 N -0.25 -3.77 11.50 30.49 0.35 -3.42 16 26 C 0.26 3.41 7.85 -16.99 -0.13 3.28 16 27 O -0.47 -5.15 13.57 -18.81 -0.26 -5.41 16 28 C -0.08 -1.06 9.72 -38.60 -0.38 -1.44 16 29 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 1.32 5.17 -51.93 -0.27 1.05 16 31 H 0.06 0.81 5.47 -51.93 -0.28 0.52 16 32 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 33 H 0.06 0.61 7.60 -51.93 -0.39 0.22 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.53 6.61 -51.93 -0.34 0.18 16 38 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.08 1.34 7.28 -51.93 -0.38 0.96 16 40 H 0.06 1.33 4.20 -51.93 -0.22 1.11 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.38 9.53 6.61 -40.82 -0.27 9.26 16 43 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.39 4.47 5.13 -40.82 -0.21 4.26 16 45 H 0.18 1.73 6.54 -52.49 -0.34 1.38 16 46 H 0.40 2.00 9.06 45.56 0.41 2.42 16 47 H 0.17 2.11 7.79 -52.49 -0.41 1.70 16 LS Contribution 362.89 15.07 5.47 5.47 Total: -1.00 -34.21 362.89 -6.61 -40.82 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -5.63 Total: 12.68 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -2.18 Total: -1.58 kcal Atomic # 7 Polarization: -62.01 SS G_CDS: 0.96 Total: -61.05 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -0.20 Total: -14.13 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.21 -6.61 -40.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568040581.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.174 kcal (2) G-P(sol) polarization free energy of solvation -34.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds