Wall clock time and date at job start Tue Mar 31 2020 19:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47331 * 2 1 4 4 C 1.52999 * 109.47152 * 119.99957 * 2 1 3 5 5 C 1.53001 * 109.47152 * 179.97438 * 4 2 1 6 6 C 1.53006 * 109.47049 * 299.99835 * 5 4 2 7 7 C 1.52999 * 109.47008 * 60.00078 * 6 5 4 8 8 C 1.53001 * 109.47152 * 299.99860 * 7 6 5 9 9 C 1.52999 * 109.47152 * 179.97438 * 8 7 6 10 10 N 1.46499 * 109.47094 * 64.56434 * 9 8 7 11 11 C 1.36931 * 119.99899 * 185.75257 * 10 9 8 12 12 H 1.08000 * 120.00305 * 359.97438 * 11 10 9 13 13 C 1.38819 * 119.99945 * 180.02562 * 11 10 9 14 14 N 1.31618 * 119.99656 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99752 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47242 * 90.00116 * 15 13 11 17 17 H 1.48503 * 109.46696 * 209.99495 * 15 13 11 18 18 H 1.48498 * 109.47223 * 329.99242 * 15 13 11 19 19 N 1.46501 * 109.47181 * 300.00451 * 8 7 6 20 20 C 1.34774 * 119.99811 * 194.08336 * 19 8 7 21 21 O 1.21517 * 120.00436 * 356.43022 * 20 19 8 22 22 C 1.48154 * 120.00198 * 176.43107 * 20 19 8 23 23 C 1.39896 * 121.11591 * 359.97438 * 22 20 19 24 24 N 1.31772 * 119.78000 * 180.02562 * 23 22 20 25 25 N 1.28272 * 122.42287 * 359.97438 * 24 23 22 26 26 C 1.32272 * 122.43590 * 359.97438 * 25 24 23 27 27 O 1.35702 * 120.08410 * 179.97438 * 26 25 24 28 28 C 1.39243 * 119.83978 * 359.72556 * 26 25 24 29 29 H 1.08998 * 109.46877 * 306.90362 * 1 2 3 30 30 H 1.09000 * 109.47344 * 66.90291 * 1 2 3 31 31 H 1.08996 * 109.47286 * 186.90402 * 1 2 3 32 32 H 1.09008 * 109.47298 * 300.00068 * 4 2 1 33 33 H 1.08998 * 109.47462 * 59.99664 * 4 2 1 34 34 H 1.09000 * 109.47331 * 60.00043 * 5 4 2 35 35 H 1.09005 * 109.46758 * 179.97438 * 5 4 2 36 36 H 1.08994 * 109.46605 * 180.02562 * 6 5 4 37 37 H 1.08998 * 109.46849 * 299.99898 * 6 5 4 38 38 H 1.08999 * 109.47112 * 59.99505 * 7 6 5 39 39 H 1.08996 * 109.46899 * 180.02562 * 7 6 5 40 40 H 1.09007 * 109.46702 * 184.56402 * 9 8 7 41 41 H 1.08997 * 109.46990 * 304.55846 * 9 8 7 42 42 H 0.97001 * 119.99636 * 5.74684 * 10 9 8 43 43 H 0.97003 * 119.99467 * 180.02562 * 14 13 11 44 44 H 0.96997 * 120.00303 * 14.07518 * 19 8 7 45 45 H 1.07996 * 120.10909 * 359.97438 * 23 22 20 46 46 H 0.96706 * 113.99747 * 90.00165 * 27 26 25 47 47 H 1.07996 * 121.12191 * 180.30096 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5700 -0.7218 1.2489 6 6 4.0795 -1.4435 -0.0004 7 6 3.5695 -0.7223 -1.2496 8 6 2.0395 -0.7217 -1.2493 9 6 1.5295 0.0001 -2.4982 10 7 1.9255 -0.7509 -3.6921 11 6 1.6818 -0.2355 -4.9371 12 1 1.1974 0.7244 -5.0390 13 6 2.0566 -0.9473 -6.0685 14 7 2.6465 -2.1173 -5.9443 15 14 1.7236 -0.2446 -7.7669 16 1 2.8847 0.5734 -8.2006 17 1 1.5135 -1.3555 -8.7297 18 1 0.5078 0.6069 -7.7206 19 7 1.5506 -2.1027 -1.2488 20 6 0.2585 -2.3602 -1.5325 21 8 -0.5158 -1.4436 -1.7249 22 6 -0.2181 -3.7609 -1.6099 23 6 0.6530 -4.8339 -1.3932 24 7 0.2010 -6.0694 -1.4690 25 7 -1.0243 -6.3383 -1.7370 26 6 -1.9258 -5.3956 -1.9568 27 8 -3.2096 -5.7343 -2.2370 28 6 -1.5554 -4.0548 -1.8948 29 1 -0.3633 0.6171 0.8218 30 1 -0.3634 0.4031 -0.9453 31 1 -0.3633 -1.0202 0.1235 32 1 1.6767 -0.2074 2.1393 33 1 1.6767 -1.7489 1.2493 34 1 3.9338 0.3057 1.2487 35 1 3.9333 -1.2353 2.1392 36 1 5.1694 -1.4442 -0.0003 37 1 3.7158 -2.4710 0.0000 38 1 3.9331 0.3053 -1.2498 39 1 3.9321 -1.2366 -2.1395 40 1 0.4425 0.0718 -2.4579 41 1 1.9583 1.0013 -2.5397 42 1 2.3603 -1.6131 -3.6006 43 1 2.9087 -2.6145 -6.7349 44 1 2.1569 -2.8318 -1.0445 45 1 1.6925 -4.6504 -1.1653 46 1 -3.7743 -5.8156 -1.4562 47 1 -2.2754 -3.2683 -2.0660 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568040581.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:08 Heat of formation + Delta-G solvation = -17.824215 kcal Electronic energy + Delta-G solvation = -30840.565772 eV Core-core repulsion = 26831.057784 eV Total energy + Delta-G solvation = -4009.507988 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.62164 -41.77120 -39.09291 -38.63944 -36.38573 -35.03636 -34.42123 -33.39129 -33.05465 -32.42972 -30.84414 -27.76523 -26.75858 -26.38428 -25.61014 -24.71691 -22.71538 -22.38489 -21.59358 -20.24672 -20.15585 -19.29427 -19.16139 -18.30232 -17.48519 -17.16678 -16.84556 -16.74959 -16.19067 -15.82526 -15.44562 -15.29142 -15.04654 -14.91688 -14.81663 -14.74066 -14.53734 -13.95551 -13.61107 -13.32192 -13.30776 -13.00580 -12.83229 -12.75155 -12.68205 -12.57277 -12.46863 -12.35732 -12.10378 -11.86497 -11.82916 -11.42270 -11.30984 -11.18516 -11.02474 -10.96306 -10.91955 -10.69965 -10.39486 -9.77474 -8.85771 -7.94449 -5.18120 -0.84980 -0.38762 1.43193 1.44141 1.52089 1.63631 1.96581 2.23313 2.49416 2.55096 3.06628 3.22698 3.39129 3.47985 3.66782 3.72024 3.79706 3.86000 3.95736 4.14269 4.21259 4.36836 4.40194 4.52864 4.58274 4.62502 4.65246 4.72588 4.77009 4.83328 4.92718 4.94971 5.06277 5.16436 5.22814 5.27007 5.29624 5.38890 5.41460 5.47988 5.51343 5.57002 5.71130 5.75331 6.28621 6.43464 6.52945 7.19296 7.36480 7.40175 8.14085 8.39840 9.28343 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.007305 B = 0.005891 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3832.332831 B = 4751.556677 C = 7227.667043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.088 4.088 3 H 0.078 0.922 4 C -0.105 4.105 5 C -0.114 4.114 6 C -0.115 4.115 7 C -0.115 4.115 8 C 0.189 3.811 9 C 0.129 3.871 10 N -0.728 5.728 11 C -0.233 4.233 12 H 0.064 0.936 13 C -0.071 4.071 14 N -0.963 5.963 15 Si 0.962 3.038 16 H -0.285 1.285 17 H -0.298 1.298 18 H -0.277 1.277 19 N -0.689 5.689 20 C 0.558 3.442 21 O -0.522 6.522 22 C -0.109 4.109 23 C 0.067 3.933 24 N -0.232 5.232 25 N -0.272 5.272 26 C 0.264 3.736 27 O -0.474 6.474 28 C -0.081 4.081 29 H 0.045 0.955 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.053 0.947 40 H 0.048 0.952 41 H 0.016 0.984 42 H 0.375 0.625 43 H 0.248 0.752 44 H 0.407 0.593 45 H 0.206 0.794 46 H 0.430 0.570 47 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.570 -1.707 20.062 20.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.108 4.108 3 H 0.096 0.904 4 C -0.142 4.142 5 C -0.152 4.152 6 C -0.153 4.153 7 C -0.153 4.153 8 C 0.103 3.897 9 C 0.002 3.998 10 N -0.370 5.370 11 C -0.366 4.366 12 H 0.082 0.918 13 C -0.264 4.264 14 N -0.615 5.615 15 Si 0.792 3.208 16 H -0.212 1.212 17 H -0.225 1.225 18 H -0.202 1.202 19 N -0.342 5.342 20 C 0.344 3.656 21 O -0.399 6.399 22 C -0.124 4.124 23 C -0.099 4.099 24 N -0.075 5.075 25 N -0.124 5.124 26 C 0.077 3.923 27 O -0.284 6.284 28 C -0.112 4.112 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.034 0.966 42 H 0.208 0.792 43 H 0.057 0.943 44 H 0.245 0.755 45 H 0.222 0.778 46 H 0.293 0.707 47 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -2.777 -2.497 19.332 19.689 hybrid contribution -0.369 1.239 -1.286 1.823 sum -3.146 -1.258 18.046 18.361 Atomic orbital electron populations 1.22163 0.94789 1.01474 1.00650 1.21465 0.95980 0.99480 0.93833 0.90367 1.21527 0.95969 1.00515 0.96213 1.21535 0.94813 1.01119 0.97685 1.21565 1.01153 0.99271 0.93283 1.21724 0.92092 1.02384 0.99110 1.20564 0.94295 0.80542 0.94292 1.21437 0.99132 0.93561 0.85675 1.42266 1.71846 1.22343 1.00594 1.19506 1.30348 1.01479 0.85222 0.91798 1.25348 1.02660 0.97601 1.00757 1.69769 1.48313 1.14853 1.28540 0.85301 0.77807 0.76891 0.80782 1.21242 1.22472 1.20246 1.45664 1.09113 1.09565 1.69876 1.17756 0.83252 0.86900 0.77731 1.90803 1.56178 1.44848 1.48100 1.21414 0.94793 0.95856 1.00300 1.24896 1.02572 0.88505 0.93963 1.72962 1.05335 1.19647 1.09519 1.72673 0.97868 1.32357 1.09514 1.20732 0.88434 0.88596 0.94539 1.84798 1.14785 1.91231 1.37548 1.22888 0.96987 0.97859 0.93446 0.93611 0.93103 0.92970 0.90993 0.91958 0.91729 0.90233 0.90585 0.91274 0.90646 0.92867 0.93405 0.96563 0.79160 0.94319 0.75539 0.77780 0.70743 0.81078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.57 7.30 71.98 0.53 -3.04 16 2 C -0.09 -2.06 2.07 -10.79 -0.02 -2.08 16 3 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 4 C -0.10 -1.80 5.04 30.59 0.15 -1.65 16 5 C -0.11 -1.69 5.92 30.60 0.18 -1.51 16 6 C -0.12 -2.01 5.75 30.60 0.18 -1.83 16 7 C -0.12 -2.96 4.71 30.59 0.14 -2.82 16 8 C 0.19 5.36 0.32 3.61 0.00 5.36 16 9 C 0.13 5.14 4.39 86.38 0.38 5.52 16 10 N -0.73 -35.89 5.02 -343.45 -1.73 -37.62 16 11 C -0.23 -13.19 9.99 84.04 0.84 -12.35 16 12 H 0.06 3.59 7.83 -2.91 -0.02 3.57 16 13 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 14 N -0.96 -58.46 13.06 21.65 0.28 -58.18 16 15 Si 0.96 47.41 29.55 68.60 2.03 49.43 16 16 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 17 H -0.30 -14.84 7.11 99.48 0.71 -14.14 16 18 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 19 N -0.69 -18.25 3.51 -425.46 -1.49 -19.75 16 20 C 0.56 17.11 5.99 86.88 0.52 17.63 16 21 O -0.52 -18.90 9.82 -3.77 -0.04 -18.93 16 22 C -0.11 -3.03 5.92 -19.85 -0.12 -3.15 16 23 C 0.07 1.66 10.84 85.10 0.92 2.58 16 24 N -0.23 -6.65 11.48 -56.51 -0.65 -7.30 16 25 N -0.27 -8.02 11.50 -170.30 -1.96 -9.98 16 26 C 0.26 6.86 7.85 84.87 0.67 7.53 16 27 O -0.47 -9.82 13.57 -90.23 -1.22 -11.05 16 28 C -0.08 -2.16 9.72 22.90 0.22 -1.94 16 29 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.05 1.68 5.17 -2.39 -0.01 1.67 16 31 H 0.05 1.43 5.47 -2.39 -0.01 1.42 16 32 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 33 H 0.06 1.07 7.60 -2.39 -0.02 1.05 16 34 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 36 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.07 1.05 6.61 -2.39 -0.02 1.03 16 38 H 0.07 1.95 8.14 -2.39 -0.02 1.94 16 39 H 0.05 1.71 7.28 -2.39 -0.02 1.69 16 40 H 0.05 2.11 4.20 -2.38 -0.01 2.10 16 41 H 0.02 0.67 8.14 -2.39 -0.02 0.66 16 42 H 0.38 19.15 6.61 -92.71 -0.61 18.54 16 43 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 44 H 0.41 8.56 5.13 -92.71 -0.48 8.09 16 45 H 0.21 3.60 6.54 -2.91 -0.02 3.59 16 46 H 0.43 3.56 9.06 -74.05 -0.67 2.89 16 47 H 0.17 4.34 7.79 -2.91 -0.02 4.31 16 Total: -1.00 -74.52 362.89 -0.43 -74.96 By element: Atomic # 1 Polarization: 34.54 SS G_CDS: -0.72 Total: 33.82 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: 5.06 Total: 4.59 kcal Atomic # 7 Polarization: -127.28 SS G_CDS: -5.54 Total: -132.83 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -1.26 Total: -29.98 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.03 Total: 49.43 kcal Total: -74.52 -0.43 -74.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568040581.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.133 kcal (2) G-P(sol) polarization free energy of solvation -74.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds