Wall clock time and date at job start Tue Mar 31 2020 19:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.49507 * 2 1 4 4 C 1.53033 * 109.50207 * 239.90400 * 2 1 3 5 5 C 1.53045 * 109.53629 * 301.40974 * 4 2 1 6 6 C 1.53619 * 109.24216 * 298.51061 * 5 4 2 7 7 N 1.46928 * 108.54477 * 54.85517 * 6 5 4 8 8 C 1.34777 * 120.63128 * 126.36320 * 7 6 5 9 9 O 1.21544 * 120.00182 * 190.49672 * 8 7 6 10 10 C 1.47935 * 119.99920 * 10.50267 * 8 7 6 11 11 C 1.39978 * 120.11439 * 187.73213 * 10 8 7 12 12 C 1.38423 * 117.96698 * 179.77497 * 11 10 8 13 13 C 1.39350 * 118.03551 * 0.48114 * 12 11 10 14 14 O 1.35519 * 120.02816 * 179.78412 * 13 12 11 15 15 N 1.32674 * 119.94300 * 359.50899 * 13 12 11 16 16 N 1.28354 * 122.19672 * 0.25374 * 15 13 12 17 17 C 1.46924 * 118.73604 * 306.09825 * 7 6 5 18 18 H 1.08999 * 109.58366 * 293.92547 * 17 7 6 19 19 C 1.53004 * 109.58417 * 173.64470 * 17 7 6 20 20 C 1.53003 * 109.46980 * 179.73412 * 19 17 7 21 21 N 1.46494 * 109.47092 * 175.68944 * 20 19 17 22 22 C 1.36938 * 120.00052 * 179.97438 * 21 20 19 23 23 H 1.07996 * 119.99948 * 0.02562 * 22 21 20 24 24 C 1.38810 * 120.00096 * 180.02562 * 22 21 20 25 25 N 1.31622 * 120.00194 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00341 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.46930 * 59.99754 * 26 24 22 28 28 H 1.48496 * 109.47747 * 180.02562 * 26 24 22 29 29 H 1.48506 * 109.46915 * 300.00184 * 26 24 22 30 30 H 1.08995 * 109.47435 * 299.93437 * 1 2 3 31 31 H 1.08999 * 109.46912 * 59.93871 * 1 2 3 32 32 H 1.09003 * 109.46271 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46305 * 61.42798 * 4 2 1 34 34 H 1.08998 * 109.46225 * 181.40642 * 4 2 1 35 35 H 1.08995 * 109.49567 * 58.58652 * 5 4 2 36 36 H 1.09001 * 109.49705 * 178.65212 * 5 4 2 37 37 H 1.08995 * 109.74207 * 295.11913 * 6 5 4 38 38 H 1.09005 * 109.66137 * 174.54659 * 6 5 4 39 39 H 1.08000 * 121.01947 * 0.02562 * 11 10 8 40 40 H 1.07999 * 120.98115 * 180.26617 * 12 11 10 41 41 H 0.96693 * 114.00518 * 269.72731 * 14 13 12 42 42 H 1.08994 * 109.47185 * 299.73420 * 19 17 7 43 43 H 1.09005 * 109.47042 * 59.74110 * 19 17 7 44 44 H 1.09001 * 109.47017 * 295.69754 * 20 19 17 45 45 H 1.09002 * 109.46623 * 55.69187 * 20 19 17 46 46 H 0.96998 * 120.00092 * 0.02562 * 21 20 19 47 47 H 0.96993 * 120.00355 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0409 -0.7234 -1.2481 5 6 1.5032 -2.1561 -1.2653 6 6 2.0191 -2.9054 -0.0274 7 7 1.6517 -2.1378 1.1703 8 6 0.9749 -2.7214 2.1791 9 8 0.5108 -2.0412 3.0732 10 6 0.7969 -4.1898 2.1984 11 6 -0.0387 -4.7836 3.1516 12 6 -0.1767 -6.1607 3.1261 13 6 0.5322 -6.8722 2.1602 14 8 0.4303 -8.2223 2.1015 15 7 1.3028 -6.2263 1.2946 16 7 1.4294 -4.9492 1.3120 17 6 2.0413 -0.7234 1.2498 18 1 3.1274 -0.6459 1.3008 19 6 1.4228 -0.0904 2.4979 20 6 1.8355 1.3805 2.5817 21 7 1.1615 2.0129 3.7183 22 6 1.3791 3.3366 3.9934 23 1 2.0473 3.9144 3.3722 24 6 0.7409 3.9356 5.0707 25 7 -0.0731 3.2312 5.8281 26 14 1.0371 5.7414 5.4456 27 1 0.6223 6.5634 4.2805 28 1 0.2446 6.1361 6.6378 29 1 2.4807 5.9603 5.7169 30 1 -0.3634 0.5128 0.8905 31 1 -0.3633 0.5148 -0.8894 32 1 -0.3632 -1.0277 -0.0005 33 1 1.6988 -0.1964 -2.1388 34 1 3.1306 -0.7449 -1.2348 35 1 0.4135 -2.1359 -1.2534 36 1 1.8479 -2.6633 -2.1665 37 1 3.1034 -3.0021 -0.0810 38 1 1.5637 -3.8947 0.0187 39 1 -0.5630 -4.1852 3.8820 40 1 -0.8123 -6.6689 3.8361 41 1 1.0853 -8.6899 2.6375 42 1 0.3366 -0.1602 2.4404 43 1 1.7745 -0.6174 3.3849 44 1 2.9151 1.4479 2.7160 45 1 1.5514 1.8905 1.6612 46 1 0.5617 1.4938 4.2765 47 1 -0.5194 3.6499 6.5807 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656425240.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:19 Heat of formation + Delta-G solvation = 29.313554 kcal Electronic energy + Delta-G solvation = -29680.732918 eV Core-core repulsion = 25673.268978 eV Total energy + Delta-G solvation = -4007.463941 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.84099 -40.52374 -38.24103 -37.70768 -35.23798 -33.88004 -33.60799 -32.76046 -31.73286 -30.73977 -28.41919 -26.64065 -26.09840 -25.06693 -24.36856 -23.74661 -22.38336 -21.04139 -20.57700 -19.65316 -18.90925 -18.14177 -17.33509 -16.79907 -16.61835 -16.05547 -15.73267 -15.35625 -14.99737 -14.58030 -14.55388 -14.21589 -14.15320 -13.85634 -13.50432 -13.38123 -13.13343 -12.96449 -12.79234 -12.77076 -12.38239 -12.29803 -11.78378 -11.35911 -11.18797 -11.14691 -10.94555 -10.77691 -10.76641 -10.72808 -10.54511 -10.35619 -10.15591 -10.04636 -9.95331 -9.67425 -9.57489 -9.01628 -8.75260 -8.45964 -6.78143 -5.65015 -2.92840 -0.06088 0.24679 2.31403 2.67677 2.89233 3.25423 3.50107 3.53750 3.55308 3.59782 4.04890 4.20973 4.37341 4.47119 4.67269 4.75808 4.86351 4.87458 5.02544 5.11372 5.25265 5.33010 5.39494 5.48561 5.53165 5.62996 5.68675 5.75751 5.79800 5.86032 5.90624 5.99641 6.14111 6.17590 6.21706 6.28847 6.35138 6.44649 6.54815 6.61873 6.70444 6.75511 7.09840 7.19878 7.36013 7.78593 7.94409 8.11576 8.54258 9.64693 10.26661 10.61500 11.57941 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015119 B = 0.002942 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.548204 B = 9515.690078 C =11017.006057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.104 4.104 3 H 0.089 0.911 4 C -0.116 4.116 5 C -0.137 4.137 6 C 0.083 3.917 7 N -0.583 5.583 8 C 0.566 3.434 9 O -0.499 6.499 10 C 0.020 3.980 11 C -0.047 4.047 12 C -0.138 4.138 13 C 0.271 3.729 14 O -0.473 6.473 15 N -0.265 5.265 16 N -0.180 5.180 17 C 0.155 3.845 18 H 0.075 0.925 19 C -0.118 4.118 20 C 0.147 3.853 21 N -0.730 5.730 22 C -0.235 4.235 23 H 0.068 0.932 24 C -0.017 4.017 25 N -0.933 5.933 26 Si 0.906 3.094 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.287 1.287 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.130 0.870 39 H 0.171 0.829 40 H 0.164 0.836 41 H 0.409 0.591 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.011 0.989 45 H 0.019 0.981 46 H 0.385 0.615 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.348 -23.155 -12.152 26.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 H 0.108 0.892 4 C -0.154 4.154 5 C -0.176 4.176 6 C -0.040 4.040 7 N -0.315 5.315 8 C 0.350 3.650 9 O -0.373 6.373 10 C -0.126 4.126 11 C -0.075 4.075 12 C -0.168 4.168 13 C 0.087 3.913 14 O -0.280 6.280 15 N -0.117 5.117 16 N -0.029 5.029 17 C 0.052 3.948 18 H 0.093 0.907 19 C -0.155 4.155 20 C 0.019 3.981 21 N -0.374 5.374 22 C -0.367 4.367 23 H 0.086 0.914 24 C -0.212 4.212 25 N -0.582 5.582 26 Si 0.737 3.263 27 H -0.214 1.214 28 H -0.218 1.218 29 H -0.214 1.214 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.147 0.853 39 H 0.188 0.812 40 H 0.181 0.819 41 H 0.269 0.731 42 H 0.104 0.896 43 H 0.095 0.905 44 H 0.029 0.971 45 H 0.036 0.964 46 H 0.219 0.781 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.682 -22.682 -13.268 26.415 hybrid contribution -0.556 0.644 1.825 2.014 sum 2.126 -22.039 -11.443 24.923 Atomic orbital electron populations 1.21879 0.94720 1.01477 1.02275 1.21562 0.96983 0.99985 0.93751 0.89248 1.21588 1.00412 0.95443 0.97917 1.22071 1.01518 0.96239 0.97733 1.22800 1.01140 0.97166 0.82923 1.47945 1.54375 1.11584 1.17622 1.17578 0.79774 0.84551 0.83085 1.91005 1.47097 1.61350 1.37853 1.23269 0.97081 0.97300 0.94970 1.22490 0.94004 0.94402 0.96639 1.22607 1.00728 0.94613 0.98851 1.21010 0.92650 0.86374 0.91299 1.84734 1.57996 1.12292 1.72946 1.73100 1.14934 1.02682 1.21002 1.73322 1.15819 0.97503 1.16232 1.21429 0.98641 0.78124 0.96560 0.90702 1.22301 1.02517 0.95414 0.95306 1.20809 0.94969 0.90909 0.91392 1.42333 1.54163 1.09024 1.31916 1.19196 1.21638 0.86690 1.09169 0.91392 1.24735 1.00062 0.98003 0.98427 1.69667 1.33360 1.35322 1.19894 0.86283 0.77371 0.85301 0.77336 1.21364 1.21756 1.21381 0.91230 0.93165 0.93082 0.91823 0.91868 0.91399 0.91000 0.91239 0.85349 0.81178 0.81876 0.73137 0.89588 0.90521 0.97095 0.96368 0.78129 0.93599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 8.20 37.16 0.30 -1.69 16 2 C -0.10 -1.32 2.32 -90.51 -0.21 -1.53 16 3 H 0.09 1.20 6.68 -51.93 -0.35 0.86 16 4 C -0.12 -1.17 5.43 -26.69 -0.14 -1.31 16 5 C -0.14 -1.30 5.75 -26.39 -0.15 -1.46 16 6 C 0.08 0.87 5.85 -3.49 -0.02 0.85 16 7 N -0.58 -7.55 2.40 -166.03 -0.40 -7.95 16 8 C 0.57 7.99 7.53 -12.29 -0.09 7.89 16 9 O -0.50 -8.59 11.88 5.33 0.06 -8.53 16 10 C 0.02 0.23 6.65 -82.85 -0.55 -0.32 16 11 C -0.05 -0.43 9.71 -38.86 -0.38 -0.81 16 12 C -0.14 -0.97 10.14 -39.10 -0.40 -1.37 16 13 C 0.27 2.26 7.85 -16.77 -0.13 2.13 16 14 O -0.47 -2.92 13.56 -18.25 -0.25 -3.17 16 15 N -0.26 -2.85 11.54 30.54 0.35 -2.49 16 16 N -0.18 -2.04 7.37 33.32 0.25 -1.79 16 17 C 0.15 2.20 2.71 -67.60 -0.18 2.01 16 18 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 19 C -0.12 -2.15 2.78 -26.73 -0.07 -2.22 16 20 C 0.15 3.15 6.05 -4.04 -0.02 3.12 16 21 N -0.73 -19.77 5.60 -59.91 -0.34 -20.10 16 22 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 23 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 24 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16 25 N -0.93 -29.41 13.06 55.49 0.72 -28.68 16 26 Si 0.91 23.12 29.55 -169.99 -5.02 18.10 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 28 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 29 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 30 H 0.07 1.14 6.33 -51.93 -0.33 0.81 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.68 5.97 -51.93 -0.31 0.37 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.70 6.33 -51.93 -0.33 0.37 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.13 1.39 4.18 -115.04 -0.48 0.91 16 39 H 0.17 1.46 7.73 -52.49 -0.41 1.05 16 40 H 0.16 0.63 8.06 -52.49 -0.42 0.21 16 41 H 0.41 0.39 9.06 45.56 0.41 0.80 16 42 H 0.09 1.71 5.05 -51.93 -0.26 1.45 16 43 H 0.08 1.54 6.61 -51.93 -0.34 1.20 16 44 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.02 0.39 6.37 -51.93 -0.33 0.05 16 46 H 0.39 11.12 7.67 -40.82 -0.31 10.81 16 47 H 0.25 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 365.92 15.07 5.51 5.51 Total: -1.00 -35.56 365.92 -7.37 -42.93 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -5.97 Total: 8.51 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -2.30 Total: -2.34 kcal Atomic # 7 Polarization: -61.60 SS G_CDS: 0.59 Total: -61.01 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: -0.18 Total: -11.70 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.02 Total: 18.10 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.56 -7.37 -42.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656425240.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.239 kcal (2) G-P(sol) polarization free energy of solvation -35.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds