Wall clock time and date at job start Tue Mar 31 2020 19:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.49507 * 2 1 4 4 C 1.53033 * 109.50207 * 239.90400 * 2 1 3 5 5 C 1.53045 * 109.53629 * 301.40974 * 4 2 1 6 6 C 1.53619 * 109.24216 * 298.51061 * 5 4 2 7 7 N 1.46928 * 108.54477 * 54.85517 * 6 5 4 8 8 C 1.34777 * 120.63128 * 126.36320 * 7 6 5 9 9 O 1.21544 * 120.00182 * 190.49672 * 8 7 6 10 10 C 1.47935 * 119.99920 * 10.50267 * 8 7 6 11 11 C 1.39978 * 120.11439 * 187.73213 * 10 8 7 12 12 C 1.38423 * 117.96698 * 179.77497 * 11 10 8 13 13 C 1.39350 * 118.03551 * 0.48114 * 12 11 10 14 14 O 1.35519 * 120.02816 * 179.78412 * 13 12 11 15 15 N 1.32674 * 119.94300 * 359.50899 * 13 12 11 16 16 N 1.28354 * 122.19672 * 0.25374 * 15 13 12 17 17 C 1.46924 * 118.73604 * 306.09825 * 7 6 5 18 18 H 1.08999 * 109.58366 * 293.92547 * 17 7 6 19 19 C 1.53004 * 109.58417 * 173.64470 * 17 7 6 20 20 C 1.53003 * 109.46980 * 179.73412 * 19 17 7 21 21 N 1.46494 * 109.47092 * 175.68944 * 20 19 17 22 22 C 1.36938 * 120.00052 * 179.97438 * 21 20 19 23 23 H 1.07996 * 119.99948 * 0.02562 * 22 21 20 24 24 C 1.38810 * 120.00096 * 180.02562 * 22 21 20 25 25 N 1.31622 * 120.00194 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00341 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.46930 * 59.99754 * 26 24 22 28 28 H 1.48496 * 109.47747 * 180.02562 * 26 24 22 29 29 H 1.48506 * 109.46915 * 300.00184 * 26 24 22 30 30 H 1.08995 * 109.47435 * 299.93437 * 1 2 3 31 31 H 1.08999 * 109.46912 * 59.93871 * 1 2 3 32 32 H 1.09003 * 109.46271 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46305 * 61.42798 * 4 2 1 34 34 H 1.08998 * 109.46225 * 181.40642 * 4 2 1 35 35 H 1.08995 * 109.49567 * 58.58652 * 5 4 2 36 36 H 1.09001 * 109.49705 * 178.65212 * 5 4 2 37 37 H 1.08995 * 109.74207 * 295.11913 * 6 5 4 38 38 H 1.09005 * 109.66137 * 174.54659 * 6 5 4 39 39 H 1.08000 * 121.01947 * 0.02562 * 11 10 8 40 40 H 1.07999 * 120.98115 * 180.26617 * 12 11 10 41 41 H 0.96693 * 114.00518 * 269.72731 * 14 13 12 42 42 H 1.08994 * 109.47185 * 299.73420 * 19 17 7 43 43 H 1.09005 * 109.47042 * 59.74110 * 19 17 7 44 44 H 1.09001 * 109.47017 * 295.69754 * 20 19 17 45 45 H 1.09002 * 109.46623 * 55.69187 * 20 19 17 46 46 H 0.96998 * 120.00092 * 0.02562 * 21 20 19 47 47 H 0.96993 * 120.00355 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0409 -0.7234 -1.2481 5 6 1.5032 -2.1561 -1.2653 6 6 2.0191 -2.9054 -0.0274 7 7 1.6517 -2.1378 1.1703 8 6 0.9749 -2.7214 2.1791 9 8 0.5108 -2.0412 3.0732 10 6 0.7969 -4.1898 2.1984 11 6 -0.0387 -4.7836 3.1516 12 6 -0.1767 -6.1607 3.1261 13 6 0.5322 -6.8722 2.1602 14 8 0.4303 -8.2223 2.1015 15 7 1.3028 -6.2263 1.2946 16 7 1.4294 -4.9492 1.3120 17 6 2.0413 -0.7234 1.2498 18 1 3.1274 -0.6459 1.3008 19 6 1.4228 -0.0904 2.4979 20 6 1.8355 1.3805 2.5817 21 7 1.1615 2.0129 3.7183 22 6 1.3791 3.3366 3.9934 23 1 2.0473 3.9144 3.3722 24 6 0.7409 3.9356 5.0707 25 7 -0.0731 3.2312 5.8281 26 14 1.0371 5.7414 5.4456 27 1 0.6223 6.5634 4.2805 28 1 0.2446 6.1361 6.6378 29 1 2.4807 5.9603 5.7169 30 1 -0.3634 0.5128 0.8905 31 1 -0.3633 0.5148 -0.8894 32 1 -0.3632 -1.0277 -0.0005 33 1 1.6988 -0.1964 -2.1388 34 1 3.1306 -0.7449 -1.2348 35 1 0.4135 -2.1359 -1.2534 36 1 1.8479 -2.6633 -2.1665 37 1 3.1034 -3.0021 -0.0810 38 1 1.5637 -3.8947 0.0187 39 1 -0.5630 -4.1852 3.8820 40 1 -0.8123 -6.6689 3.8361 41 1 1.0853 -8.6899 2.6375 42 1 0.3366 -0.1602 2.4404 43 1 1.7745 -0.6174 3.3849 44 1 2.9151 1.4479 2.7160 45 1 1.5514 1.8905 1.6612 46 1 0.5617 1.4938 4.2765 47 1 -0.5194 3.6499 6.5807 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656425240.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:18 Heat of formation + Delta-G solvation = 1.360398 kcal Electronic energy + Delta-G solvation = -29681.945058 eV Core-core repulsion = 25673.268978 eV Total energy + Delta-G solvation = -4008.676081 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.66098 -41.50908 -39.04326 -38.56907 -36.96515 -35.08131 -34.46895 -34.11557 -32.74163 -32.31057 -29.89905 -27.82489 -27.13918 -25.91889 -25.60401 -25.00601 -23.91375 -22.07646 -21.96011 -20.24902 -19.82305 -19.31027 -18.80419 -18.08844 -17.33317 -17.14998 -16.80319 -16.54170 -16.38994 -15.84383 -15.56652 -15.32271 -15.28290 -14.98204 -14.80036 -14.59351 -14.50731 -14.23825 -14.09362 -13.60031 -13.39403 -13.17534 -13.06473 -12.92088 -12.80571 -12.52993 -12.35906 -12.22887 -12.15160 -11.80183 -11.74465 -11.70621 -11.50007 -11.33347 -11.20754 -10.89187 -10.83439 -10.49391 -10.23785 -9.53729 -8.98521 -7.93256 -5.23237 -0.80642 -0.44229 1.44102 1.45586 1.50380 1.56401 1.72303 2.18328 2.42713 2.56510 2.80039 3.28444 3.38966 3.49399 3.68666 3.72626 3.79962 3.86647 3.94760 4.09619 4.14181 4.26252 4.42681 4.47695 4.49500 4.59753 4.64655 4.68718 4.73475 4.81702 4.82007 4.85027 4.88516 5.00836 5.11034 5.12689 5.25415 5.25976 5.33834 5.43471 5.44984 5.51402 5.55924 5.75269 6.27617 6.31146 6.44756 6.94476 7.30071 7.32945 8.10536 8.34558 9.30689 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015119 B = 0.002942 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.548204 B = 9515.690078 C =11017.006057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.101 4.101 3 H 0.083 0.917 4 C -0.109 4.109 5 C -0.133 4.133 6 C 0.081 3.919 7 N -0.581 5.581 8 C 0.561 3.439 9 O -0.544 6.544 10 C 0.003 3.997 11 C -0.054 4.054 12 C -0.117 4.117 13 C 0.281 3.719 14 O -0.475 6.475 15 N -0.288 5.288 16 N -0.184 5.184 17 C 0.159 3.841 18 H 0.086 0.914 19 C -0.095 4.095 20 C 0.148 3.852 21 N -0.747 5.747 22 C -0.246 4.246 23 H 0.077 0.923 24 C -0.081 4.081 25 N -0.973 5.973 26 Si 0.979 3.021 27 H -0.275 1.275 28 H -0.294 1.294 29 H -0.276 1.276 30 H 0.033 0.967 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.130 0.870 39 H 0.171 0.829 40 H 0.201 0.799 41 H 0.433 0.567 42 H 0.065 0.935 43 H 0.052 0.948 44 H 0.015 0.985 45 H 0.029 0.971 46 H 0.370 0.630 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.212 -24.442 -13.855 28.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.121 4.121 3 H 0.101 0.899 4 C -0.146 4.146 5 C -0.171 4.171 6 C -0.040 4.040 7 N -0.312 5.312 8 C 0.346 3.654 9 O -0.421 6.421 10 C -0.144 4.144 11 C -0.083 4.083 12 C -0.147 4.147 13 C 0.096 3.904 14 O -0.285 6.285 15 N -0.141 5.141 16 N -0.033 5.033 17 C 0.056 3.944 18 H 0.104 0.896 19 C -0.133 4.133 20 C 0.021 3.979 21 N -0.389 5.389 22 C -0.378 4.378 23 H 0.095 0.905 24 C -0.272 4.272 25 N -0.623 5.623 26 Si 0.807 3.193 27 H -0.201 1.201 28 H -0.221 1.221 29 H -0.202 1.202 30 H 0.052 0.948 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.116 0.884 37 H 0.099 0.901 38 H 0.147 0.853 39 H 0.189 0.811 40 H 0.218 0.782 41 H 0.297 0.703 42 H 0.084 0.916 43 H 0.071 0.929 44 H 0.032 0.968 45 H 0.046 0.954 46 H 0.202 0.798 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.602 -24.012 -15.030 28.556 hybrid contribution -0.828 0.850 2.330 2.615 sum 2.774 -23.162 -12.700 26.560 Atomic orbital electron populations 1.21800 0.95603 1.01147 1.01153 1.21544 0.96129 0.99881 0.94501 0.89887 1.21556 1.01174 0.95389 0.96527 1.22064 1.00962 0.95958 0.98094 1.22982 1.01895 0.97011 0.82158 1.48028 1.53833 1.11058 1.18275 1.17970 0.79107 0.85714 0.82575 1.90982 1.49075 1.62673 1.39347 1.22937 0.98937 0.95824 0.96659 1.22593 0.93820 0.95590 0.96279 1.22912 0.99844 0.93354 0.98545 1.21122 0.91511 0.87265 0.90487 1.84699 1.59042 1.11054 1.73683 1.73024 1.16338 1.02381 1.22358 1.73253 1.15959 0.97888 1.16214 1.21294 0.98821 0.79098 0.95208 0.89641 1.21985 1.01318 0.93352 0.96660 1.20969 0.94447 0.92664 0.89780 1.42594 1.54390 1.08712 1.33170 1.19650 1.21262 0.87738 1.09162 0.90479 1.25670 1.00212 1.02843 0.98520 1.69855 1.34714 1.37287 1.20481 0.85135 0.77523 0.79577 0.77065 1.20142 1.22055 1.20219 0.94815 0.91660 0.93061 0.90404 0.90517 0.92276 0.88409 0.90060 0.85308 0.81125 0.78183 0.70314 0.91635 0.92935 0.96757 0.95360 0.79844 0.94024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 8.20 71.98 0.59 -3.27 16 2 C -0.10 -2.51 2.32 -10.72 -0.02 -2.54 16 3 H 0.08 2.17 6.68 -2.39 -0.02 2.15 16 4 C -0.11 -1.92 5.43 30.62 0.17 -1.75 16 5 C -0.13 -2.21 5.75 30.82 0.18 -2.03 16 6 C 0.08 1.60 5.85 86.51 0.51 2.11 16 7 N -0.58 -15.12 2.40 -797.48 -1.92 -17.04 16 8 C 0.56 16.52 7.53 86.81 0.65 17.17 16 9 O -0.54 -20.14 11.88 -3.86 -0.05 -20.19 16 10 C 0.00 0.06 6.65 42.00 0.28 0.34 16 11 C -0.05 -0.99 9.71 22.74 0.22 -0.77 16 12 C -0.12 -1.39 10.14 22.58 0.23 -1.16 16 13 C 0.28 4.05 7.85 84.83 0.67 4.72 16 14 O -0.47 -4.45 13.56 -88.22 -1.20 -5.64 16 15 N -0.29 -5.79 11.54 -170.01 -1.96 -7.75 16 16 N -0.18 -4.05 7.37 -48.51 -0.36 -4.41 16 17 C 0.16 4.54 2.71 44.97 0.12 4.66 16 18 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 19 C -0.10 -3.67 2.78 30.60 0.08 -3.58 16 20 C 0.15 6.53 6.05 86.38 0.52 7.05 16 21 N -0.75 -41.95 5.60 -343.46 -1.92 -43.88 16 22 C -0.25 -14.68 9.99 84.03 0.84 -13.84 16 23 H 0.08 4.35 7.83 -2.91 -0.02 4.32 16 24 C -0.08 -4.89 5.50 84.86 0.47 -4.42 16 25 N -0.97 -63.05 13.06 21.65 0.28 -62.76 16 26 Si 0.98 48.01 29.55 68.60 2.03 50.04 16 27 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 28 H -0.29 -14.45 7.11 99.48 0.71 -13.75 16 29 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 30 H 0.03 1.16 6.33 -2.39 -0.02 1.14 16 31 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.05 1.39 5.97 -2.39 -0.01 1.37 16 33 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.06 1.11 6.33 -2.39 -0.02 1.09 16 36 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.13 2.65 4.18 -84.02 -0.35 2.30 16 39 H 0.17 3.03 7.73 -2.91 -0.02 3.01 16 40 H 0.20 0.81 8.06 -2.91 -0.02 0.79 16 41 H 0.43 -0.57 9.06 -74.06 -0.67 -1.24 16 42 H 0.07 2.81 5.05 -2.39 -0.01 2.80 16 43 H 0.05 2.27 6.61 -2.38 -0.02 2.25 16 44 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.03 1.21 6.37 -2.39 -0.02 1.19 16 46 H 0.37 22.61 7.67 -92.71 -0.71 21.90 16 47 H 0.25 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -79.53 365.92 -0.28 -79.81 By element: Atomic # 1 Polarization: 29.82 SS G_CDS: -0.69 Total: 29.13 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: 5.50 Total: 2.70 kcal Atomic # 7 Polarization: -129.96 SS G_CDS: -5.88 Total: -135.84 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: -1.24 Total: -25.83 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 2.03 Total: 50.04 kcal Total: -79.53 -0.28 -79.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656425240.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.171 kcal (2) G-P(sol) polarization free energy of solvation -79.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds