Wall clock time and date at job start Tue Mar 31 2020 19:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47438 * 2 1 4 4 C 1.53007 * 109.47093 * 239.99866 * 2 1 3 5 5 C 1.52999 * 109.46861 * 300.00218 * 4 2 1 6 6 C 1.52997 * 109.47262 * 299.99463 * 5 4 2 7 7 C 1.53007 * 109.46744 * 60.00465 * 6 5 4 8 8 C 1.52994 * 109.47117 * 299.99554 * 7 6 5 9 9 C 1.53007 * 109.47117 * 180.02562 * 8 7 6 10 10 N 1.46495 * 109.47078 * 175.03215 * 9 8 7 11 11 C 1.36931 * 120.00182 * 184.98008 * 10 9 8 12 12 H 1.08003 * 120.00133 * 0.02562 * 11 10 9 13 13 C 1.38815 * 120.00592 * 179.97438 * 11 10 9 14 14 N 1.31619 * 119.99700 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00368 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47485 * 90.00197 * 15 13 11 17 17 H 1.48509 * 109.47018 * 210.00371 * 15 13 11 18 18 H 1.48498 * 109.46981 * 329.99942 * 15 13 11 19 19 N 1.46502 * 109.47587 * 300.00505 * 8 7 6 20 20 C 1.34776 * 119.99610 * 304.37327 * 19 8 7 21 21 O 1.21546 * 119.99975 * 354.61018 * 20 19 8 22 22 C 1.47935 * 119.99857 * 174.61437 * 20 19 8 23 23 C 1.39979 * 120.11367 * 179.72333 * 22 20 19 24 24 C 1.38419 * 117.96729 * 179.78125 * 23 22 20 25 25 C 1.39353 * 118.03421 * 0.48320 * 24 23 22 26 26 O 1.35523 * 120.02746 * 179.72672 * 25 24 23 27 27 N 1.32671 * 119.94497 * 359.74641 * 25 24 23 28 28 N 1.28360 * 122.19598 * 0.02562 * 27 25 24 29 29 H 1.08997 * 109.46858 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99817 * 1 2 3 31 31 H 1.08997 * 109.46724 * 59.99975 * 1 2 3 32 32 H 1.08991 * 109.46977 * 179.97438 * 4 2 1 33 33 H 1.09000 * 109.46948 * 60.00006 * 4 2 1 34 34 H 1.09001 * 109.46733 * 179.97438 * 5 4 2 35 35 H 1.09001 * 109.47668 * 59.99993 * 5 4 2 36 36 H 1.09001 * 109.47737 * 300.00822 * 6 5 4 37 37 H 1.09001 * 109.47482 * 179.97438 * 6 5 4 38 38 H 1.09001 * 109.46985 * 60.00206 * 7 6 5 39 39 H 1.09000 * 109.46948 * 179.97438 * 7 6 5 40 40 H 1.08993 * 109.47113 * 295.03030 * 9 8 7 41 41 H 1.08998 * 109.46768 * 55.03603 * 9 8 7 42 42 H 0.97004 * 120.00339 * 4.98045 * 10 9 8 43 43 H 0.96992 * 120.00239 * 179.97438 * 14 13 11 44 44 H 0.96994 * 120.00177 * 124.37500 * 19 8 7 45 45 H 1.08002 * 121.01718 * 0.02562 * 23 22 20 46 46 H 1.07997 * 120.98367 * 180.25324 * 24 23 22 47 47 H 0.96702 * 113.99850 * 270.02184 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 1.5300 -2.1638 -1.2492 6 6 2.0400 -2.8850 0.0000 7 6 1.5300 -2.1637 1.2492 8 6 2.0401 -0.7213 1.2493 9 6 1.5306 -0.0002 2.4989 10 7 2.1142 1.3421 2.5601 11 6 1.8829 2.1402 3.6485 12 1 1.2705 1.7801 4.4619 13 6 2.4364 3.4120 3.7068 14 7 3.1831 3.8508 2.7158 15 14 2.1214 4.5005 5.1918 16 1 3.1757 4.2651 6.2107 17 1 2.1452 5.9256 4.7749 18 1 0.7927 4.1762 5.7703 19 7 3.5051 -0.7213 1.2492 20 6 4.1790 -1.3803 2.2125 21 8 3.5752 -1.8917 3.1352 22 6 5.6534 -1.4812 2.1470 23 6 6.3562 -2.1601 3.1492 24 6 7.7343 -2.2314 3.0413 25 6 8.3383 -1.6144 1.9474 26 8 9.6854 -1.6545 1.8047 27 7 7.5936 -0.9875 1.0461 28 7 6.3151 -0.9232 1.1405 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.1300 -0.7209 -1.2495 33 1 1.6767 -0.2075 -2.1393 34 1 1.8929 -2.6775 -2.1394 35 1 0.4400 -2.1638 -1.2492 36 1 3.1300 -2.8851 0.0000 37 1 1.6763 -3.9126 0.0003 38 1 0.4400 -2.1638 1.2492 39 1 1.8930 -2.6778 2.1392 40 1 0.4443 0.0776 2.4559 41 1 1.8198 -0.5630 3.3864 42 1 2.6646 1.6655 1.8297 43 1 3.5695 4.7395 2.7563 44 1 3.9901 -0.2470 0.5559 45 1 5.8386 -2.6178 3.9794 46 1 8.3243 -2.7466 3.7847 47 1 10.1476 -0.9167 2.2257 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732252124.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:52 Heat of formation + Delta-G solvation = -6.799132 kcal Electronic energy + Delta-G solvation = -30501.599534 eV Core-core repulsion = 26492.569630 eV Total energy + Delta-G solvation = -4009.029904 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.42092 -40.45515 -38.28423 -37.56263 -34.69630 -33.54141 -33.22487 -32.05628 -31.73094 -30.76980 -29.55077 -26.65420 -25.33065 -24.96750 -24.48266 -22.88258 -22.34635 -21.03359 -20.33587 -19.38119 -18.45112 -18.11454 -17.43891 -17.14417 -16.35405 -15.60318 -15.35902 -15.16171 -14.95474 -14.50801 -14.30312 -14.10212 -13.82045 -13.54764 -13.33417 -13.20041 -13.00283 -12.78187 -12.54474 -12.32410 -11.99013 -11.92193 -11.75067 -11.61816 -11.36952 -11.13868 -10.85847 -10.81081 -10.67814 -10.52485 -10.32659 -10.11184 -9.95657 -9.89080 -9.85395 -9.71377 -9.58394 -9.34866 -8.76469 -8.53256 -6.80807 -5.70209 -2.96563 0.25651 0.55218 2.64097 3.06776 3.29569 3.46147 3.51595 3.53032 3.64727 3.94304 4.40666 4.49769 4.63822 4.73220 4.78763 4.87975 4.92694 4.99272 5.30402 5.37067 5.40636 5.54828 5.57931 5.60375 5.64860 5.71245 5.77944 5.86241 5.88076 5.92491 6.09358 6.12860 6.21750 6.25008 6.31712 6.32987 6.45776 6.54999 6.60001 6.66020 6.76096 6.96360 6.99280 7.10392 7.76676 7.83055 8.34748 8.47614 8.48967 9.60206 10.19102 10.54391 11.52717 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.007782 B = 0.005280 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3597.174071 B = 5301.846221 C = 7796.028701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 H 0.087 0.913 4 C -0.117 4.117 5 C -0.119 4.119 6 C -0.114 4.114 7 C -0.132 4.132 8 C 0.180 3.820 9 C 0.139 3.861 10 N -0.725 5.725 11 C -0.229 4.229 12 H 0.068 0.932 13 C -0.016 4.016 14 N -0.934 5.934 15 Si 0.903 3.097 16 H -0.293 1.293 17 H -0.293 1.293 18 H -0.283 1.283 19 N -0.681 5.681 20 C 0.583 3.417 21 O -0.522 6.522 22 C 0.026 3.974 23 C -0.049 4.049 24 C -0.142 4.142 25 C 0.266 3.734 26 O -0.475 6.475 27 N -0.255 5.255 28 N -0.179 5.179 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.026 0.974 41 H 0.044 0.956 42 H 0.382 0.618 43 H 0.253 0.747 44 H 0.408 0.592 45 H 0.167 0.833 46 H 0.161 0.839 47 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.253 -14.941 -5.380 16.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 H 0.105 0.895 4 C -0.154 4.154 5 C -0.156 4.156 6 C -0.151 4.151 7 C -0.170 4.170 8 C 0.094 3.906 9 C 0.011 3.989 10 N -0.369 5.369 11 C -0.361 4.361 12 H 0.086 0.914 13 C -0.211 4.211 14 N -0.584 5.584 15 Si 0.735 3.265 16 H -0.220 1.220 17 H -0.219 1.219 18 H -0.208 1.208 19 N -0.331 5.331 20 C 0.365 3.635 21 O -0.397 6.397 22 C -0.121 4.121 23 C -0.078 4.078 24 C -0.172 4.172 25 C 0.082 3.918 26 O -0.281 6.281 27 N -0.108 5.108 28 N -0.029 5.029 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.044 0.956 41 H 0.062 0.938 42 H 0.216 0.784 43 H 0.063 0.937 44 H 0.244 0.756 45 H 0.185 0.815 46 H 0.178 0.822 47 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 4.643 -14.916 -6.247 16.825 hybrid contribution 0.796 0.764 1.899 2.196 sum 5.439 -14.152 -4.349 15.773 Atomic orbital electron populations 1.21918 0.94234 1.01595 1.02458 1.21262 0.96859 1.00123 0.92661 0.89521 1.21613 1.00621 0.95504 0.97711 1.21561 1.00869 0.95754 0.97420 1.21461 1.00670 0.98333 0.94681 1.21950 1.01039 0.94988 0.99037 1.20653 0.78103 0.95200 0.96625 1.21169 0.95749 0.87339 0.94621 1.42224 1.60666 1.11352 1.22643 1.19216 1.24937 0.94940 0.97003 0.91407 1.24675 1.00692 0.97710 0.98029 1.69649 1.38258 1.18630 1.31825 0.86235 0.77665 0.80135 0.82465 1.22028 1.21899 1.20832 1.45743 1.07184 1.51394 1.28793 1.17219 0.84051 0.79570 0.82614 1.90741 1.67784 1.48312 1.32911 1.23130 0.97446 0.97508 0.94047 1.22432 0.93306 0.93805 0.98228 1.22534 0.95511 1.00827 0.98346 1.21031 0.86432 0.93570 0.90780 1.84710 1.12524 1.50918 1.79957 1.73084 0.99863 1.14175 1.23721 1.73290 1.00144 1.11163 1.18256 0.92487 0.91285 0.92861 0.91998 0.91896 0.92662 0.91724 0.92442 0.92535 0.90826 0.89703 0.95634 0.93831 0.78416 0.93727 0.75598 0.81534 0.82151 0.73216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 8.16 37.16 0.30 -1.68 16 2 C -0.09 -1.34 2.16 -90.61 -0.20 -1.53 16 3 H 0.09 1.52 7.08 -51.93 -0.37 1.16 16 4 C -0.12 -1.44 5.28 -26.73 -0.14 -1.58 16 5 C -0.12 -1.32 5.65 -26.73 -0.15 -1.47 16 6 C -0.11 -1.39 5.77 -26.73 -0.15 -1.54 16 7 C -0.13 -1.87 4.18 -26.73 -0.11 -1.98 16 8 C 0.18 2.92 0.09 -131.81 -0.01 2.91 16 9 C 0.14 2.88 4.72 -4.04 -0.02 2.86 16 10 N -0.72 -18.13 5.19 -59.91 -0.31 -18.44 16 11 C -0.23 -6.48 9.99 -15.06 -0.15 -6.63 16 12 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 13 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 14 N -0.93 -28.27 13.06 55.49 0.72 -27.55 16 15 Si 0.90 22.82 29.55 -169.99 -5.02 17.80 16 16 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 17 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 18 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 19 N -0.68 -11.28 3.48 -48.51 -0.17 -11.45 16 20 C 0.58 10.07 7.14 -12.29 -0.09 9.98 16 21 O -0.52 -9.90 12.68 5.33 0.07 -9.83 16 22 C 0.03 0.40 6.83 -82.85 -0.57 -0.17 16 23 C -0.05 -0.60 9.72 -38.86 -0.38 -0.98 16 24 C -0.14 -1.43 10.14 -39.10 -0.40 -1.82 16 25 C 0.27 3.15 7.85 -16.77 -0.13 3.02 16 26 O -0.47 -4.37 13.56 -18.26 -0.25 -4.61 16 27 N -0.26 -3.83 11.54 30.55 0.35 -3.47 16 28 N -0.18 -2.86 10.74 33.32 0.36 -2.50 16 29 H 0.06 0.69 4.81 -51.93 -0.25 0.44 16 30 H 0.07 1.09 6.32 -51.93 -0.33 0.76 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.78 6.95 -51.93 -0.36 0.42 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.68 6.43 -51.93 -0.33 0.35 16 36 H 0.06 0.75 7.53 -51.93 -0.39 0.36 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.98 6.43 -51.93 -0.33 0.64 16 39 H 0.08 1.35 6.04 -51.93 -0.31 1.04 16 40 H 0.03 0.53 6.18 -51.93 -0.32 0.21 16 41 H 0.04 1.00 6.45 -51.93 -0.33 0.66 16 42 H 0.38 9.95 6.45 -40.82 -0.26 9.68 16 43 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.41 6.61 6.84 -40.82 -0.28 6.33 16 45 H 0.17 1.80 7.71 -52.49 -0.40 1.39 16 46 H 0.16 1.02 8.06 -52.49 -0.42 0.59 16 47 H 0.41 1.71 9.06 45.56 0.41 2.12 16 LS Contribution 365.32 15.07 5.51 5.51 Total: -1.00 -34.12 365.32 -6.56 -40.68 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: -5.53 Total: 15.05 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -2.29 Total: -1.18 kcal Atomic # 7 Polarization: -64.36 SS G_CDS: 0.96 Total: -63.41 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.18 Total: -14.44 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.12 -6.56 -40.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732252124.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.877 kcal (2) G-P(sol) polarization free energy of solvation -34.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds