Wall clock time and date at job start Tue Mar 31 2020 19:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47438 * 2 1 4 4 C 1.53007 * 109.47093 * 239.99866 * 2 1 3 5 5 C 1.52999 * 109.46861 * 300.00218 * 4 2 1 6 6 C 1.52997 * 109.47262 * 299.99463 * 5 4 2 7 7 C 1.53007 * 109.46744 * 60.00465 * 6 5 4 8 8 C 1.52994 * 109.47117 * 299.99554 * 7 6 5 9 9 C 1.53007 * 109.47117 * 180.02562 * 8 7 6 10 10 N 1.46495 * 109.47078 * 175.03215 * 9 8 7 11 11 C 1.36931 * 120.00182 * 184.98008 * 10 9 8 12 12 H 1.08003 * 120.00133 * 0.02562 * 11 10 9 13 13 C 1.38815 * 120.00592 * 179.97438 * 11 10 9 14 14 N 1.31619 * 119.99700 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00368 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47485 * 90.00197 * 15 13 11 17 17 H 1.48509 * 109.47018 * 210.00371 * 15 13 11 18 18 H 1.48498 * 109.46981 * 329.99942 * 15 13 11 19 19 N 1.46502 * 109.47587 * 300.00505 * 8 7 6 20 20 C 1.34776 * 119.99610 * 304.37327 * 19 8 7 21 21 O 1.21546 * 119.99975 * 354.61018 * 20 19 8 22 22 C 1.47935 * 119.99857 * 174.61437 * 20 19 8 23 23 C 1.39979 * 120.11367 * 179.72333 * 22 20 19 24 24 C 1.38419 * 117.96729 * 179.78125 * 23 22 20 25 25 C 1.39353 * 118.03421 * 0.48320 * 24 23 22 26 26 O 1.35523 * 120.02746 * 179.72672 * 25 24 23 27 27 N 1.32671 * 119.94497 * 359.74641 * 25 24 23 28 28 N 1.28360 * 122.19598 * 0.02562 * 27 25 24 29 29 H 1.08997 * 109.46858 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99817 * 1 2 3 31 31 H 1.08997 * 109.46724 * 59.99975 * 1 2 3 32 32 H 1.08991 * 109.46977 * 179.97438 * 4 2 1 33 33 H 1.09000 * 109.46948 * 60.00006 * 4 2 1 34 34 H 1.09001 * 109.46733 * 179.97438 * 5 4 2 35 35 H 1.09001 * 109.47668 * 59.99993 * 5 4 2 36 36 H 1.09001 * 109.47737 * 300.00822 * 6 5 4 37 37 H 1.09001 * 109.47482 * 179.97438 * 6 5 4 38 38 H 1.09001 * 109.46985 * 60.00206 * 7 6 5 39 39 H 1.09000 * 109.46948 * 179.97438 * 7 6 5 40 40 H 1.08993 * 109.47113 * 295.03030 * 9 8 7 41 41 H 1.08998 * 109.46768 * 55.03603 * 9 8 7 42 42 H 0.97004 * 120.00339 * 4.98045 * 10 9 8 43 43 H 0.96992 * 120.00239 * 179.97438 * 14 13 11 44 44 H 0.96994 * 120.00177 * 124.37500 * 19 8 7 45 45 H 1.08002 * 121.01718 * 0.02562 * 23 22 20 46 46 H 1.07997 * 120.98367 * 180.25324 * 24 23 22 47 47 H 0.96702 * 113.99850 * 270.02184 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 1.5300 -2.1638 -1.2492 6 6 2.0400 -2.8850 0.0000 7 6 1.5300 -2.1637 1.2492 8 6 2.0401 -0.7213 1.2493 9 6 1.5306 -0.0002 2.4989 10 7 2.1142 1.3421 2.5601 11 6 1.8829 2.1402 3.6485 12 1 1.2705 1.7801 4.4619 13 6 2.4364 3.4120 3.7068 14 7 3.1831 3.8508 2.7158 15 14 2.1214 4.5005 5.1918 16 1 3.1757 4.2651 6.2107 17 1 2.1452 5.9256 4.7749 18 1 0.7927 4.1762 5.7703 19 7 3.5051 -0.7213 1.2492 20 6 4.1790 -1.3803 2.2125 21 8 3.5752 -1.8917 3.1352 22 6 5.6534 -1.4812 2.1470 23 6 6.3562 -2.1601 3.1492 24 6 7.7343 -2.2314 3.0413 25 6 8.3383 -1.6144 1.9474 26 8 9.6854 -1.6545 1.8047 27 7 7.5936 -0.9875 1.0461 28 7 6.3151 -0.9232 1.1405 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.1300 -0.7209 -1.2495 33 1 1.6767 -0.2075 -2.1393 34 1 1.8929 -2.6775 -2.1394 35 1 0.4400 -2.1638 -1.2492 36 1 3.1300 -2.8851 0.0000 37 1 1.6763 -3.9126 0.0003 38 1 0.4400 -2.1638 1.2492 39 1 1.8930 -2.6778 2.1392 40 1 0.4443 0.0776 2.4559 41 1 1.8198 -0.5630 3.3864 42 1 2.6646 1.6655 1.8297 43 1 3.5695 4.7395 2.7563 44 1 3.9901 -0.2470 0.5559 45 1 5.8386 -2.6178 3.9794 46 1 8.3243 -2.7466 3.7847 47 1 10.1476 -0.9167 2.2257 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732252124.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:51 Heat of formation + Delta-G solvation = -34.466044 kcal Electronic energy + Delta-G solvation = -30502.799262 eV Core-core repulsion = 26492.569630 eV Total energy + Delta-G solvation = -4010.229632 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.49703 -41.66608 -39.41832 -38.52491 -36.43365 -34.91079 -34.31121 -33.55275 -32.81265 -32.26377 -31.00445 -27.94767 -26.83271 -26.18720 -25.47875 -24.61397 -23.55528 -22.28008 -21.59441 -20.22187 -19.70862 -19.24173 -19.21453 -18.47447 -17.28250 -16.90359 -16.73738 -16.44703 -16.25817 -16.13865 -15.52869 -15.21076 -15.04174 -14.91251 -14.75996 -14.53382 -14.32588 -14.11051 -13.59145 -13.41035 -13.35265 -13.13940 -13.00632 -12.95632 -12.83166 -12.74509 -12.43713 -12.30358 -12.08512 -11.92602 -11.77939 -11.47257 -11.41133 -11.21136 -10.96192 -10.93168 -10.84580 -10.69349 -10.54863 -9.90818 -8.92032 -7.93248 -5.19384 -0.75403 -0.39615 1.43754 1.44874 1.52079 1.53713 1.94183 2.27100 2.50599 2.55517 2.88867 3.38910 3.44321 3.60158 3.67420 3.76664 3.82778 3.87206 3.88676 4.07773 4.23085 4.40882 4.43612 4.48590 4.53472 4.57863 4.73189 4.75050 4.79899 4.86224 4.90335 4.91382 5.00317 5.13652 5.15706 5.18533 5.23379 5.29710 5.42245 5.45935 5.48022 5.53060 5.59710 5.73196 6.28426 6.40790 6.50138 7.10029 7.35621 7.35702 8.12371 8.38243 9.29742 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.007782 B = 0.005280 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3597.174071 B = 5301.846221 C = 7796.028701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.086 4.086 3 H 0.052 0.948 4 C -0.112 4.112 5 C -0.112 4.112 6 C -0.108 4.108 7 C -0.125 4.125 8 C 0.185 3.815 9 C 0.141 3.859 10 N -0.729 5.729 11 C -0.238 4.238 12 H 0.066 0.934 13 C -0.072 4.072 14 N -0.965 5.965 15 Si 0.967 3.033 16 H -0.292 1.292 17 H -0.293 1.293 18 H -0.271 1.271 19 N -0.681 5.681 20 C 0.578 3.422 21 O -0.547 6.547 22 C 0.002 3.998 23 C -0.054 4.054 24 C -0.118 4.118 25 C 0.274 3.726 26 O -0.473 6.473 27 N -0.289 5.289 28 N -0.201 5.201 29 H 0.079 0.921 30 H 0.041 0.959 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.045 0.955 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.065 0.935 40 H 0.030 0.970 41 H 0.020 0.980 42 H 0.374 0.626 43 H 0.249 0.751 44 H 0.407 0.593 45 H 0.180 0.820 46 H 0.207 0.793 47 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.691 -16.507 -5.506 18.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.105 4.105 3 H 0.071 0.929 4 C -0.149 4.149 5 C -0.150 4.150 6 C -0.146 4.146 7 C -0.163 4.163 8 C 0.099 3.901 9 C 0.014 3.986 10 N -0.372 5.372 11 C -0.370 4.370 12 H 0.084 0.916 13 C -0.264 4.264 14 N -0.617 5.617 15 Si 0.797 3.203 16 H -0.219 1.219 17 H -0.220 1.220 18 H -0.196 1.196 19 N -0.330 5.330 20 C 0.361 3.639 21 O -0.424 6.424 22 C -0.146 4.146 23 C -0.082 4.082 24 C -0.147 4.147 25 C 0.089 3.911 26 O -0.283 6.283 27 N -0.142 5.142 28 N -0.050 5.050 29 H 0.097 0.903 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.063 0.937 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.084 0.916 40 H 0.048 0.952 41 H 0.038 0.962 42 H 0.207 0.793 43 H 0.058 0.942 44 H 0.244 0.756 45 H 0.197 0.803 46 H 0.224 0.776 47 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges 5.084 -16.494 -6.374 18.399 hybrid contribution 0.771 1.211 1.977 2.443 sum 5.855 -15.284 -4.397 16.947 Atomic orbital electron populations 1.21886 0.93159 1.02827 1.01868 1.21198 0.97676 0.98334 0.93311 0.92930 1.21578 1.00277 0.96461 0.96598 1.21545 1.01594 0.94394 0.97432 1.21427 0.99940 0.99207 0.93992 1.21887 1.01626 0.93223 0.99591 1.20604 0.78124 0.96262 0.95101 1.21238 0.95737 0.85452 0.96170 1.42313 1.60602 1.12672 1.21613 1.19547 1.24289 0.95517 0.97628 0.91597 1.25424 1.01086 0.99083 1.00798 1.69804 1.39492 1.18721 1.33634 0.85229 0.77848 0.78027 0.79223 1.21906 1.21980 1.19633 1.45784 1.07303 1.51158 1.28723 1.17579 0.85108 0.79010 0.82179 1.90713 1.68622 1.49397 1.33701 1.23007 0.96475 0.99447 0.95628 1.22647 0.94388 0.93421 0.97760 1.22922 0.94558 0.99119 0.98108 1.21209 0.87301 0.92329 0.90294 1.84678 1.11049 1.52177 1.80419 1.72965 0.99698 1.15994 1.25587 1.73201 1.00861 1.12012 1.18950 0.90266 0.93947 0.91363 0.92638 0.90428 0.90754 0.90403 0.93654 0.90626 0.89592 0.91610 0.95233 0.96158 0.79275 0.94201 0.75620 0.80307 0.77624 0.70501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 8.16 71.98 0.59 -3.15 16 2 C -0.09 -2.58 2.16 -10.79 -0.02 -2.60 16 3 H 0.05 1.93 7.08 -2.39 -0.02 1.92 16 4 C -0.11 -2.62 5.28 30.60 0.16 -2.46 16 5 C -0.11 -2.20 5.65 30.59 0.17 -2.02 16 6 C -0.11 -2.46 5.77 30.60 0.18 -2.28 16 7 C -0.12 -3.50 4.18 30.59 0.13 -3.38 16 8 C 0.18 6.15 0.09 3.61 0.00 6.15 16 9 C 0.14 6.07 4.72 86.38 0.41 6.48 16 10 N -0.73 -37.98 5.19 -343.46 -1.78 -39.76 16 11 C -0.24 -13.78 9.99 84.04 0.84 -12.94 16 12 H 0.07 3.77 7.83 -2.91 -0.02 3.74 16 13 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 14 N -0.97 -59.91 13.06 21.65 0.28 -59.63 16 15 Si 0.97 47.58 29.55 68.60 2.03 49.60 16 16 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 17 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16 18 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 19 N -0.68 -23.55 3.48 -425.66 -1.48 -25.04 16 20 C 0.58 20.76 7.14 86.81 0.62 21.38 16 21 O -0.55 -21.56 12.68 -3.86 -0.05 -21.61 16 22 C 0.00 0.06 6.83 42.00 0.29 0.35 16 23 C -0.05 -1.27 9.72 22.74 0.22 -1.05 16 24 C -0.12 -2.06 10.14 22.58 0.23 -1.83 16 25 C 0.27 5.98 7.85 84.83 0.67 6.65 16 26 O -0.47 -7.47 13.56 -88.26 -1.20 -8.66 16 27 N -0.29 -8.63 11.54 -170.01 -1.96 -10.59 16 28 N -0.20 -6.59 10.74 -48.51 -0.52 -7.12 16 29 H 0.08 1.74 4.81 -2.39 -0.01 1.73 16 30 H 0.04 1.35 6.32 -2.39 -0.02 1.33 16 31 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.05 1.38 6.95 -2.39 -0.02 1.36 16 33 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.08 1.36 6.43 -2.39 -0.02 1.34 16 36 H 0.04 1.15 7.53 -2.39 -0.02 1.13 16 37 H 0.08 1.46 8.14 -2.39 -0.02 1.45 16 38 H 0.09 2.17 6.43 -2.39 -0.02 2.15 16 39 H 0.07 2.13 6.04 -2.39 -0.01 2.11 16 40 H 0.03 1.26 6.18 -2.39 -0.01 1.25 16 41 H 0.02 0.98 6.45 -2.39 -0.02 0.96 16 42 H 0.37 20.48 6.45 -92.70 -0.60 19.88 16 43 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 44 H 0.41 14.01 6.84 -92.71 -0.63 13.38 16 45 H 0.18 3.71 7.71 -2.91 -0.02 3.68 16 46 H 0.21 1.65 8.06 -2.91 -0.02 1.63 16 47 H 0.43 2.40 9.06 -74.06 -0.67 1.72 16 Total: -1.00 -76.36 365.32 -0.59 -76.96 By element: Atomic # 1 Polarization: 41.14 SS G_CDS: -0.85 Total: 40.29 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 4.94 Total: 5.56 kcal Atomic # 7 Polarization: -136.67 SS G_CDS: -5.46 Total: -142.14 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -1.25 Total: -30.27 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 2.03 Total: 49.60 kcal Total: -76.36 -0.59 -76.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732252124.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.492 kcal (2) G-P(sol) polarization free energy of solvation -76.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds