Wall clock time and date at job start Tue Mar 31 2020 19:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46952 * 2 1 4 4 C 1.53000 * 109.47195 * 240.00359 * 2 1 3 5 5 C 1.53007 * 109.46879 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.46790 * 59.99936 * 5 4 2 7 7 C 1.53000 * 109.47462 * 299.99707 * 6 5 4 8 8 C 1.52994 * 109.46965 * 60.00418 * 7 6 5 9 9 C 1.53003 * 109.47435 * 180.02562 * 8 7 6 10 10 N 1.46499 * 109.47027 * 65.16766 * 9 8 7 11 11 C 1.36942 * 119.99632 * 174.94483 * 10 9 8 12 12 H 1.08001 * 120.00093 * 4.99339 * 11 10 9 13 13 C 1.38813 * 119.99809 * 184.99745 * 11 10 9 14 14 N 1.31617 * 119.99892 * 184.92907 * 13 11 10 15 15 Si 1.86799 * 119.99846 * 4.92915 * 13 11 10 16 16 H 1.48502 * 109.47162 * 94.82993 * 15 13 11 17 17 H 1.48502 * 109.47022 * 214.83008 * 15 13 11 18 18 H 1.48500 * 109.47332 * 334.82729 * 15 13 11 19 19 N 1.46501 * 109.47448 * 60.00056 * 8 7 6 20 20 C 1.34768 * 119.99846 * 64.64103 * 19 8 7 21 21 O 1.21545 * 120.00280 * 354.71978 * 20 19 8 22 22 C 1.47936 * 119.99800 * 174.72153 * 20 19 8 23 23 C 1.39980 * 120.11530 * 179.97438 * 22 20 19 24 24 C 1.38418 * 117.97153 * 179.72699 * 23 22 20 25 25 C 1.39347 * 118.03295 * 0.25068 * 24 23 22 26 26 O 1.35516 * 120.02772 * 179.97438 * 25 24 23 27 27 N 1.32670 * 119.94567 * 0.02562 * 25 24 23 28 28 N 1.28363 * 122.19683 * 359.97438 * 27 25 24 29 29 H 1.08990 * 109.47595 * 299.99365 * 1 2 3 30 30 H 1.09000 * 109.47254 * 60.00367 * 1 2 3 31 31 H 1.09003 * 109.46488 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47414 * 59.99859 * 4 2 1 33 33 H 1.08998 * 109.47092 * 299.98970 * 4 2 1 34 34 H 1.08994 * 109.47029 * 300.00241 * 5 4 2 35 35 H 1.09004 * 109.47084 * 179.97438 * 5 4 2 36 36 H 1.09005 * 109.47132 * 179.97438 * 6 5 4 37 37 H 1.09003 * 109.47344 * 60.00294 * 6 5 4 38 38 H 1.09002 * 109.46877 * 300.00305 * 7 6 5 39 39 H 1.08994 * 109.47414 * 180.02562 * 7 6 5 40 40 H 1.08997 * 109.47478 * 185.17496 * 9 8 7 41 41 H 1.09003 * 109.46265 * 305.16902 * 9 8 7 42 42 H 0.96992 * 120.00394 * 354.94073 * 10 9 8 43 43 H 0.96998 * 120.00084 * 180.02562 * 14 13 11 44 44 H 0.97006 * 119.99940 * 244.64364 * 19 8 7 45 45 H 1.08000 * 121.01789 * 0.02562 * 23 22 20 46 46 H 1.07998 * 120.98286 * 180.27772 * 24 23 22 47 47 H 0.96703 * 114.00165 * 90.00183 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5701 -0.7206 -1.2495 6 6 4.0805 -1.4415 -0.0003 7 6 3.5705 -0.7203 1.2490 8 6 2.0405 -0.7209 1.2493 9 6 1.5304 0.0008 2.4982 10 7 1.9139 1.4133 2.4368 11 6 1.4766 2.2840 3.3991 12 1 0.9169 1.9158 4.2463 13 6 1.7526 3.6396 3.2857 14 7 1.4178 4.4628 4.2565 15 14 2.5991 4.2955 1.7551 16 1 1.5768 4.7811 0.7937 17 1 3.4989 5.4162 2.1290 18 1 3.3946 3.2108 1.1261 19 7 1.5527 -2.1023 1.2495 20 6 1.7998 -2.9040 2.3042 21 8 2.5078 -2.5135 3.2117 22 6 1.2094 -4.2594 2.3574 23 6 1.4649 -5.0944 3.4514 24 6 0.8853 -6.3514 3.4582 25 6 0.0876 -6.7105 2.3735 26 8 -0.4991 -7.9316 2.3382 27 7 -0.0961 -5.8565 1.3750 28 7 0.4398 -4.6901 1.3653 29 1 -0.3634 0.5137 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.6767 -0.2074 -2.1392 33 1 1.6768 -1.7489 -1.2493 34 1 3.9330 0.3072 -1.2496 35 1 3.9335 -1.2347 -2.1393 36 1 5.1705 -1.4415 -0.0007 37 1 3.7176 -2.4693 -0.0001 38 1 3.9335 0.3075 1.2488 39 1 3.9345 -1.2337 2.1389 40 1 0.4444 -0.0792 2.5460 41 1 1.9678 -0.4563 3.3859 42 1 2.4776 1.7319 1.7146 43 1 1.6103 5.4102 4.1771 44 1 1.0518 -2.4399 0.4904 45 1 2.0912 -4.7661 4.2678 46 1 1.0462 -7.0334 4.2800 47 1 -1.3782 -7.9573 2.7403 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732252125.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:54 Heat of formation + Delta-G solvation = -32.112647 kcal Electronic energy + Delta-G solvation = -30249.524836 eV Core-core repulsion = 26239.397255 eV Total energy + Delta-G solvation = -4010.127581 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.54360 -41.71630 -39.45936 -38.53851 -36.50730 -35.03845 -34.34093 -33.77996 -33.38311 -32.66461 -30.81579 -28.00879 -26.80282 -26.33050 -25.57653 -24.39615 -23.23392 -22.37022 -21.86629 -20.27656 -19.88067 -19.80023 -19.56319 -18.59625 -17.30562 -16.81412 -16.52663 -16.43639 -16.17251 -15.92037 -15.44804 -15.37034 -15.20414 -15.14018 -14.99085 -14.74632 -14.52434 -14.36494 -13.78556 -13.47529 -13.39250 -13.21855 -13.03244 -12.99345 -12.83564 -12.77639 -12.56589 -12.36108 -12.07927 -11.87004 -11.81696 -11.50651 -11.47592 -11.29653 -11.22612 -10.94487 -10.89723 -10.71946 -10.64519 -10.05353 -9.25815 -8.02953 -5.35959 -0.78737 -0.40863 1.34534 1.40244 1.44842 1.46845 1.82198 2.23138 2.45571 2.47430 2.83858 3.27610 3.38053 3.52036 3.67281 3.72000 3.74054 3.74504 3.84638 3.88411 4.11684 4.17573 4.37411 4.45388 4.49103 4.50881 4.58695 4.68798 4.74495 4.85397 4.88361 4.90313 4.95406 5.07233 5.08979 5.16271 5.19609 5.27495 5.31185 5.37321 5.46340 5.49381 5.59415 5.75190 6.20218 6.40641 6.45183 7.01964 7.08354 7.32523 7.81477 8.04382 9.19064 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015664 B = 0.003488 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.125987 B = 8024.583763 C = 8823.616976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.069 0.931 4 C -0.110 4.110 5 C -0.119 4.119 6 C -0.109 4.109 7 C -0.126 4.126 8 C 0.187 3.813 9 C 0.152 3.848 10 N -0.744 5.744 11 C -0.231 4.231 12 H 0.048 0.952 13 C -0.060 4.060 14 N -0.984 5.984 15 Si 0.954 3.046 16 H -0.275 1.275 17 H -0.294 1.294 18 H -0.250 1.250 19 N -0.681 5.681 20 C 0.572 3.428 21 O -0.544 6.544 22 C 0.004 3.996 23 C -0.052 4.052 24 C -0.118 4.118 25 C 0.278 3.722 26 O -0.475 6.475 27 N -0.285 5.285 28 N -0.196 5.196 29 H 0.038 0.962 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.022 0.978 41 H 0.024 0.976 42 H 0.368 0.632 43 H 0.258 0.742 44 H 0.417 0.583 45 H 0.177 0.823 46 H 0.203 0.797 47 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.483 -25.501 -10.390 27.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 H 0.087 0.913 4 C -0.147 4.147 5 C -0.157 4.157 6 C -0.146 4.146 7 C -0.164 4.164 8 C 0.101 3.899 9 C 0.024 3.976 10 N -0.392 5.392 11 C -0.362 4.362 12 H 0.066 0.934 13 C -0.252 4.252 14 N -0.634 5.634 15 Si 0.781 3.219 16 H -0.201 1.201 17 H -0.221 1.221 18 H -0.175 1.175 19 N -0.334 5.334 20 C 0.356 3.644 21 O -0.420 6.420 22 C -0.143 4.143 23 C -0.080 4.080 24 C -0.148 4.148 25 C 0.094 3.906 26 O -0.285 6.285 27 N -0.139 5.139 28 N -0.045 5.045 29 H 0.058 0.942 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.040 0.960 41 H 0.042 0.958 42 H 0.204 0.796 43 H 0.067 0.933 44 H 0.257 0.743 45 H 0.194 0.806 46 H 0.220 0.780 47 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges -0.348 -25.119 -11.259 27.529 hybrid contribution 0.263 0.698 1.245 1.451 sum -0.086 -24.421 -10.014 26.394 Atomic orbital electron populations 1.21834 0.94190 1.02252 1.02077 1.21348 0.96777 0.99394 0.93422 0.91269 1.21629 0.95673 1.00923 0.96469 1.21576 0.95527 1.00757 0.97808 1.21460 1.00424 0.99138 0.93591 1.21873 0.93872 1.01017 0.99685 1.20354 0.94055 0.80303 0.95216 1.21015 0.96571 0.83614 0.96373 1.42590 1.61112 1.04935 1.30574 1.18945 1.27999 0.88731 1.00543 0.93418 1.25486 1.02448 0.95978 1.01272 1.69896 1.55147 1.03610 1.34769 0.85420 0.78513 0.78079 0.79892 1.20130 1.22116 1.17453 1.45782 1.55876 1.11355 1.20339 1.17767 0.80420 0.83639 0.82580 1.90825 1.38267 1.74461 1.38498 1.22808 0.99436 0.96782 0.95309 1.22643 0.95606 0.92293 0.97497 1.22923 0.95835 0.96524 0.99482 1.21185 0.93079 0.86216 0.90167 1.84699 1.38511 1.21516 1.83757 1.72985 1.18479 0.98038 1.24388 1.73185 1.03827 1.06290 1.21222 0.94235 0.90985 0.91440 0.89829 0.90725 0.92433 0.89791 0.91427 0.91897 0.92482 0.91919 0.96012 0.95769 0.79600 0.93278 0.74314 0.80551 0.77965 0.70322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.93 8.67 71.98 0.62 -3.30 16 2 C -0.09 -2.50 1.77 -10.79 -0.02 -2.52 16 3 H 0.07 2.23 6.66 -2.39 -0.02 2.21 16 4 C -0.11 -2.20 5.03 30.60 0.15 -2.05 16 5 C -0.12 -2.40 5.92 30.60 0.18 -2.22 16 6 C -0.11 -2.55 5.76 30.59 0.18 -2.38 16 7 C -0.13 -3.96 4.46 30.59 0.14 -3.82 16 8 C 0.19 5.87 0.11 3.60 0.00 5.87 16 9 C 0.15 6.39 4.41 86.38 0.38 6.77 16 10 N -0.74 -36.27 4.77 -343.44 -1.64 -37.91 16 11 C -0.23 -13.76 10.47 84.03 0.88 -12.88 16 12 H 0.05 3.16 8.06 -2.91 -0.02 3.14 16 13 C -0.06 -3.65 5.50 84.86 0.47 -3.18 16 14 N -0.98 -64.46 13.97 21.65 0.30 -64.15 16 15 Si 0.95 46.06 28.02 68.60 1.92 47.98 16 16 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 17 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 18 H -0.25 -10.74 6.14 99.48 0.61 -10.13 16 19 N -0.68 -18.19 3.72 -425.68 -1.58 -19.77 16 20 C 0.57 16.39 7.22 86.81 0.63 17.02 16 21 O -0.54 -19.06 12.69 -3.86 -0.05 -19.11 16 22 C 0.00 0.09 6.83 42.00 0.29 0.38 16 23 C -0.05 -0.89 9.72 22.74 0.22 -0.66 16 24 C -0.12 -1.34 10.14 22.58 0.23 -1.11 16 25 C 0.28 4.16 7.85 84.83 0.67 4.82 16 26 O -0.47 -4.69 13.56 -88.18 -1.20 -5.89 16 27 N -0.28 -6.13 11.54 -170.02 -1.96 -8.09 16 28 N -0.20 -4.56 10.74 -48.51 -0.52 -5.08 16 29 H 0.04 1.33 6.55 -2.39 -0.02 1.31 16 30 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.07 1.54 6.96 -2.39 -0.02 1.53 16 32 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.07 1.32 6.77 -2.39 -0.02 1.30 16 34 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 37 H 0.06 1.42 7.60 -2.39 -0.02 1.40 16 38 H 0.06 1.98 7.09 -2.39 -0.02 1.96 16 39 H 0.06 2.23 6.33 -2.39 -0.02 2.22 16 40 H 0.02 0.96 6.72 -2.39 -0.02 0.94 16 41 H 0.02 1.16 6.20 -2.39 -0.01 1.14 16 42 H 0.37 16.94 3.11 -92.71 -0.29 16.65 16 43 H 0.26 16.04 8.31 -92.71 -0.77 15.26 16 44 H 0.42 9.49 5.54 -92.70 -0.51 8.97 16 45 H 0.18 2.69 7.71 -2.91 -0.02 2.67 16 46 H 0.20 0.62 8.06 -2.91 -0.02 0.60 16 47 H 0.43 -0.31 9.06 -74.06 -0.67 -0.98 16 Total: -1.00 -79.57 364.67 -0.25 -79.82 By element: Atomic # 1 Polarization: 31.99 SS G_CDS: -0.53 Total: 31.46 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: 5.01 Total: 0.74 kcal Atomic # 7 Polarization: -129.60 SS G_CDS: -5.40 Total: -135.01 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -1.24 Total: -25.00 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.92 Total: 47.98 kcal Total: -79.57 -0.25 -79.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732252125.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.704 kcal (2) G-P(sol) polarization free energy of solvation -79.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds