Wall clock time and date at job start Tue Mar 31 2020 19:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47131 * 2 1 4 4 C 1.53005 * 109.47042 * 119.99861 * 2 1 3 5 5 C 1.53003 * 109.46852 * 59.99915 * 4 2 1 6 6 C 1.52998 * 109.46905 * 60.00092 * 5 4 2 7 7 C 1.53005 * 109.47290 * 299.99639 * 6 5 4 8 8 C 1.52998 * 109.47276 * 240.00112 * 2 1 3 9 9 C 1.52997 * 109.47429 * 59.99718 * 8 2 1 10 10 N 1.46495 * 109.47413 * 176.12304 * 9 8 2 11 11 C 1.36938 * 120.00156 * 175.47212 * 10 9 8 12 12 H 1.08005 * 119.99764 * 4.90546 * 11 10 9 13 13 C 1.38814 * 119.99945 * 184.90690 * 11 10 9 14 14 N 1.31621 * 119.99603 * 183.91280 * 13 11 10 15 15 Si 1.86794 * 120.00214 * 3.91337 * 13 11 10 16 16 H 1.48498 * 109.47201 * 92.44009 * 15 13 11 17 17 H 1.48498 * 109.47159 * 212.44211 * 15 13 11 18 18 H 1.48502 * 109.46871 * 332.44414 * 15 13 11 19 19 N 1.46501 * 109.47242 * 180.02562 * 8 2 1 20 20 C 1.34778 * 119.99652 * 300.96173 * 19 8 2 21 21 O 1.21547 * 120.00080 * 355.48650 * 20 19 8 22 22 C 1.47933 * 120.00032 * 175.48276 * 20 19 8 23 23 C 1.39977 * 120.11463 * 179.97438 * 22 20 19 24 24 C 1.38423 * 117.96503 * 180.02562 * 23 22 20 25 25 C 1.39344 * 118.03814 * 359.97438 * 24 23 22 26 26 O 1.35516 * 120.02912 * 180.02562 * 25 24 23 27 27 N 1.32680 * 119.94503 * 0.02562 * 25 24 23 28 28 N 1.28357 * 122.19266 * 359.97438 * 27 25 24 29 29 H 1.08997 * 109.47131 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47263 * 300.00203 * 1 2 3 31 31 H 1.09005 * 109.46965 * 60.00124 * 1 2 3 32 32 H 1.09001 * 109.46942 * 179.97438 * 4 2 1 33 33 H 1.08998 * 109.47039 * 300.00072 * 4 2 1 34 34 H 1.09001 * 109.47183 * 179.97438 * 5 4 2 35 35 H 1.09000 * 109.47533 * 300.00222 * 5 4 2 36 36 H 1.09001 * 109.47436 * 59.99714 * 6 5 4 37 37 H 1.09001 * 109.47433 * 179.97438 * 6 5 4 38 38 H 1.09001 * 109.46942 * 300.00377 * 7 6 5 39 39 H 1.08998 * 109.47039 * 180.02562 * 7 6 5 40 40 H 1.09004 * 109.47172 * 296.12741 * 9 8 2 41 41 H 1.09003 * 109.46756 * 56.12283 * 9 8 2 42 42 H 0.96993 * 119.99925 * 355.46553 * 10 9 8 43 43 H 0.97001 * 119.99703 * 180.02562 * 14 13 11 44 44 H 0.96989 * 120.00044 * 120.96528 * 19 8 2 45 45 H 1.07994 * 121.02091 * 359.97438 * 23 22 20 46 46 H 1.07997 * 120.97725 * 179.97438 * 24 23 22 47 47 H 0.96696 * 114.00540 * 269.97830 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5299 -2.1638 1.2493 6 6 2.0400 -2.8850 0.0001 7 6 1.5300 -2.1637 -1.2492 8 6 2.0400 -0.7212 -1.2492 9 6 1.5301 -0.0001 -2.4985 10 7 2.0932 -0.6346 -3.6928 11 6 1.7044 -0.2172 -4.9377 12 1 1.0440 0.6312 -5.0410 13 6 2.1591 -0.8845 -6.0668 14 7 1.8483 -0.4374 -7.2652 15 14 3.2119 -2.4168 -5.8856 16 1 2.3410 -3.6195 -5.8933 17 1 4.1724 -2.4939 -7.0156 18 1 3.9593 -2.3550 -4.6039 19 7 3.5051 -0.7217 -1.2489 20 6 4.1793 0.4451 -1.2290 21 8 3.5747 1.4975 -1.2941 22 6 5.6552 0.4449 -1.1277 23 6 6.3579 1.6554 -1.1074 24 6 7.7378 1.6033 -1.0121 25 6 8.3427 0.3500 -0.9417 26 8 9.6910 0.2520 -0.8470 27 7 7.5975 -0.7475 -0.9676 28 7 6.3177 -0.7031 -1.0559 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 3.1300 -0.7216 1.2491 33 1 1.6767 -0.2074 2.1392 34 1 1.8936 -2.6778 2.1390 35 1 0.4399 -2.1638 1.2492 36 1 3.1300 -2.8850 0.0000 37 1 1.6770 -3.9128 0.0002 38 1 0.4400 -2.1637 -1.2492 39 1 1.8930 -2.6778 -2.1392 40 1 0.4422 -0.0598 -2.5339 41 1 1.8355 1.0457 -2.4644 42 1 2.7414 -1.3503 -3.6017 43 1 2.1657 -0.9039 -8.0542 44 1 3.9897 -1.5617 -1.2631 45 1 5.8394 2.6010 -1.1651 46 1 8.3282 2.5074 -0.9928 47 1 10.1428 0.2030 -1.7005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732252127.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:00 Heat of formation + Delta-G solvation = -3.350911 kcal Electronic energy + Delta-G solvation = -30590.820568 eV Core-core repulsion = 26581.940190 eV Total energy + Delta-G solvation = -4008.880378 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.55571 -40.60992 -38.38627 -37.66883 -34.92265 -33.65260 -33.37856 -32.25077 -31.81809 -31.12062 -29.77677 -26.80633 -25.52660 -25.17184 -24.61421 -22.69062 -22.00591 -21.59081 -20.43203 -19.50102 -18.56349 -18.22220 -17.80294 -17.45284 -16.46581 -15.80757 -15.42660 -15.20495 -15.04316 -14.54872 -14.40436 -14.08779 -14.00134 -13.78942 -13.54474 -13.35652 -12.95199 -12.72971 -12.65020 -12.53219 -12.33606 -12.08547 -12.07523 -11.60887 -11.52166 -11.24935 -11.13927 -10.88300 -10.81355 -10.63941 -10.33517 -10.21236 -10.10365 -10.06171 -9.98727 -9.84391 -9.55931 -9.48889 -8.79148 -8.67411 -7.11653 -5.72324 -3.05608 0.12718 0.43233 2.50662 2.93585 3.15008 3.37447 3.40348 3.46102 3.49868 3.80701 4.28441 4.38730 4.61393 4.62038 4.64385 4.76470 4.80264 4.85915 5.16139 5.23439 5.28620 5.41620 5.45721 5.50162 5.57670 5.59580 5.66574 5.67539 5.71864 5.76998 5.91256 5.94693 6.02700 6.10825 6.16312 6.21071 6.37061 6.41190 6.45783 6.48896 6.59600 6.81767 6.89160 6.99741 7.64840 8.07068 8.19920 8.31965 8.47165 9.27771 10.00046 10.21218 11.46508 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008033 B = 0.005534 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3484.917535 B = 5058.256490 C = 7135.380342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.098 4.098 3 H 0.090 0.910 4 C -0.111 4.111 5 C -0.119 4.119 6 C -0.122 4.122 7 C -0.123 4.123 8 C 0.176 3.824 9 C 0.144 3.856 10 N -0.752 5.752 11 C -0.233 4.233 12 H 0.089 0.911 13 C 0.002 3.998 14 N -0.936 5.936 15 Si 0.882 3.118 16 H -0.284 1.284 17 H -0.293 1.293 18 H -0.279 1.279 19 N -0.690 5.690 20 C 0.581 3.419 21 O -0.514 6.514 22 C 0.023 3.977 23 C -0.047 4.047 24 C -0.141 4.141 25 C 0.268 3.732 26 O -0.474 6.474 27 N -0.256 5.256 28 N -0.184 5.184 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.039 0.961 41 H 0.050 0.950 42 H 0.359 0.641 43 H 0.258 0.742 44 H 0.406 0.594 45 H 0.169 0.831 46 H 0.163 0.837 47 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.422 0.747 18.820 20.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.118 4.118 3 H 0.109 0.891 4 C -0.148 4.148 5 C -0.156 4.156 6 C -0.160 4.160 7 C -0.160 4.160 8 C 0.090 3.910 9 C 0.017 3.983 10 N -0.398 5.398 11 C -0.364 4.364 12 H 0.107 0.893 13 C -0.193 4.193 14 N -0.584 5.584 15 Si 0.713 3.287 16 H -0.211 1.211 17 H -0.219 1.219 18 H -0.206 1.206 19 N -0.341 5.341 20 C 0.363 3.637 21 O -0.388 6.388 22 C -0.124 4.124 23 C -0.076 4.076 24 C -0.171 4.171 25 C 0.084 3.916 26 O -0.280 6.280 27 N -0.110 5.110 28 N -0.033 5.033 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.104 0.896 39 H 0.092 0.908 40 H 0.057 0.943 41 H 0.068 0.932 42 H 0.193 0.807 43 H 0.068 0.932 44 H 0.242 0.758 45 H 0.186 0.814 46 H 0.180 0.820 47 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 7.769 0.039 19.231 20.741 hybrid contribution 1.531 0.008 -0.700 1.684 sum 9.300 0.047 18.530 20.733 Atomic orbital electron populations 1.21966 0.94548 1.02087 1.01991 1.21416 0.96265 1.00897 0.93227 0.89144 1.21517 1.00440 0.95514 0.97346 1.21563 1.00994 0.95645 0.97428 1.21583 1.00786 0.98953 0.94652 1.21841 1.02223 0.93748 0.98225 1.20748 0.77921 0.96258 0.96045 1.21170 0.96341 0.96751 0.84068 1.42678 1.51389 1.43703 1.02014 1.19057 1.24323 1.11234 0.81741 0.89346 1.24654 1.00538 0.98958 0.95128 1.69709 1.50500 1.41496 0.96729 0.86586 0.80546 0.84971 0.76634 1.21093 1.21948 1.20590 1.45850 1.07332 1.08218 1.72653 1.17271 0.84137 0.84840 0.77422 1.90774 1.67731 1.31225 1.49080 1.23122 0.97364 0.91723 1.00215 1.22455 0.93332 1.00415 0.91379 1.22563 0.95471 0.99376 0.99646 1.21031 0.86408 0.90074 0.94107 1.84715 1.12542 1.95478 1.35289 1.73073 0.99746 1.26964 1.11197 1.73263 1.00246 1.23853 1.05952 0.92135 0.92926 0.91733 0.92404 0.92301 0.92530 0.91576 0.92075 0.91808 0.89640 0.90761 0.94333 0.93193 0.80719 0.93230 0.75762 0.81350 0.81983 0.73146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 8.15 37.16 0.30 -1.48 16 2 C -0.10 -1.31 2.02 -90.62 -0.18 -1.50 16 3 H 0.09 1.38 6.25 -51.93 -0.32 1.05 16 4 C -0.11 -1.26 5.29 -26.73 -0.14 -1.40 16 5 C -0.12 -1.22 5.65 -26.73 -0.15 -1.37 16 6 C -0.12 -1.38 5.75 -26.73 -0.15 -1.53 16 7 C -0.12 -1.71 4.37 -26.73 -0.12 -1.83 16 8 C 0.18 2.70 0.09 -131.82 -0.01 2.69 16 9 C 0.14 2.87 4.43 -4.05 -0.02 2.86 16 10 N -0.75 -17.97 4.91 -59.91 -0.29 -18.27 16 11 C -0.23 -6.71 10.47 -15.06 -0.16 -6.87 16 12 H 0.09 2.74 8.06 -52.48 -0.42 2.32 16 13 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 14 N -0.94 -29.83 13.97 55.49 0.78 -29.05 16 15 Si 0.88 22.56 27.94 -169.99 -4.75 17.81 16 16 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 17 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 18 H -0.28 -6.73 6.24 56.52 0.35 -6.38 16 19 N -0.69 -10.68 3.45 -48.51 -0.17 -10.85 16 20 C 0.58 9.44 7.21 -12.29 -0.09 9.35 16 21 O -0.51 -9.31 12.66 5.32 0.07 -9.24 16 22 C 0.02 0.33 6.83 -82.85 -0.57 -0.24 16 23 C -0.05 -0.53 9.72 -38.86 -0.38 -0.91 16 24 C -0.14 -1.29 10.14 -39.10 -0.40 -1.69 16 25 C 0.27 2.93 7.85 -16.77 -0.13 2.80 16 26 O -0.47 -3.98 13.56 -18.24 -0.25 -4.23 16 27 N -0.26 -3.58 11.54 30.54 0.35 -3.23 16 28 N -0.18 -2.72 10.74 33.32 0.36 -2.36 16 29 H 0.06 0.68 4.81 -51.93 -0.25 0.43 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.85 6.52 -51.93 -0.34 0.51 16 32 H 0.06 0.70 7.60 -51.93 -0.39 0.31 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.65 6.43 -51.93 -0.33 0.31 16 36 H 0.06 0.70 6.88 -51.93 -0.36 0.34 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 1.15 6.43 -51.93 -0.33 0.81 16 39 H 0.07 1.18 7.21 -51.93 -0.37 0.81 16 40 H 0.04 0.77 6.64 -51.93 -0.34 0.42 16 41 H 0.05 1.11 6.21 -51.93 -0.32 0.78 16 42 H 0.36 8.43 4.33 -40.82 -0.18 8.25 16 43 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 44 H 0.41 5.99 6.71 -40.82 -0.27 5.71 16 45 H 0.17 1.69 7.71 -52.49 -0.40 1.28 16 46 H 0.16 0.91 8.06 -52.49 -0.42 0.48 16 47 H 0.41 1.38 9.06 45.56 0.41 1.80 16 LS Contribution 362.48 15.07 5.46 5.46 Total: -1.00 -35.45 362.48 -6.27 -41.72 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -5.54 Total: 13.39 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -2.29 Total: -1.15 kcal Atomic # 7 Polarization: -64.78 SS G_CDS: 1.02 Total: -63.76 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -0.18 Total: -13.47 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.75 Total: 17.81 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.45 -6.27 -41.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732252127.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.366 kcal (2) G-P(sol) polarization free energy of solvation -35.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds