Wall clock time and date at job start Tue Mar 31 2020 19:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46724 * 2 1 4 4 C 1.53109 * 109.46505 * 119.99337 * 2 1 3 5 5 C 1.53399 * 109.64263 * 190.06606 * 4 2 1 6 6 C 1.50713 * 108.33649 * 309.98745 * 5 4 2 7 7 N 1.34305 * 128.90630 * 196.69060 * 6 5 4 8 8 H 0.97005 * 124.98153 * 359.77021 * 7 6 5 9 9 N 1.28845 * 110.04588 * 179.80588 * 7 6 5 10 10 C 1.32211 * 110.14808 * 0.05798 * 9 7 6 11 11 C 1.47709 * 126.67814 * 179.97438 * 10 9 7 12 12 O 1.21572 * 120.00018 * 180.02562 * 11 10 9 13 13 N 1.34773 * 120.00390 * 0.02562 * 11 10 9 14 14 C 1.46497 * 120.00303 * 180.02562 * 13 11 10 15 15 C 1.53007 * 109.47002 * 179.97438 * 14 13 11 16 16 O 1.42896 * 113.28302 * 313.06664 * 15 14 13 17 17 C 1.53497 * 114.20425 * 179.97438 * 15 14 13 18 18 N 1.47062 * 87.98453 * 220.14915 * 17 15 14 19 19 C 1.36943 * 136.05579 * 207.08745 * 18 17 15 20 20 H 1.08002 * 119.99788 * 359.97438 * 19 18 17 21 21 C 1.38811 * 119.99622 * 180.27778 * 19 18 17 22 22 N 1.31614 * 120.00467 * 359.72375 * 21 19 18 23 23 Si 1.86801 * 119.99700 * 179.72266 * 21 19 18 24 24 H 1.48496 * 109.47031 * 59.99836 * 23 21 19 25 25 H 1.48497 * 109.47267 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47169 * 300.00118 * 23 21 19 27 27 C 1.47067 * 87.88602 * 27.34481 * 18 17 15 28 28 C 1.35590 * 123.87977 * 16.86819 * 6 5 4 29 29 C 1.50385 * 124.61637 * 359.76171 * 28 6 5 30 30 H 1.08997 * 109.46912 * 300.00940 * 1 2 3 31 31 H 1.09003 * 109.47180 * 60.00838 * 1 2 3 32 32 H 1.09003 * 109.47223 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.44143 * 70.00898 * 4 2 1 34 34 H 1.08998 * 109.41102 * 310.09353 * 4 2 1 35 35 H 1.09005 * 109.68799 * 190.28501 * 5 4 2 36 36 H 1.08998 * 109.72781 * 69.72316 * 5 4 2 37 37 H 0.97007 * 119.99473 * 0.02562 * 13 11 10 38 38 H 1.08995 * 109.47079 * 59.99988 * 14 13 11 39 39 H 1.09001 * 109.47087 * 299.99631 * 14 13 11 40 40 H 0.96700 * 114.00159 * 46.93727 * 16 15 14 41 41 H 1.09000 * 113.46436 * 105.36543 * 17 15 14 42 42 H 1.08997 * 113.51966 * 334.94328 * 17 15 14 43 43 H 0.96995 * 120.00147 * 180.02562 * 22 21 19 44 44 H 1.08994 * 113.46653 * 87.43736 * 27 18 17 45 45 H 1.08996 * 113.46465 * 217.87717 * 27 18 17 46 46 H 1.08996 * 109.89523 * 256.90928 * 29 28 6 47 47 H 1.08999 * 109.59314 * 136.28936 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0402 -0.7216 1.2503 5 6 3.5533 -0.5090 1.3870 6 6 4.1999 -0.8405 0.0667 7 7 5.4919 -1.0923 -0.2002 8 1 6.2062 -1.0890 0.4561 9 7 5.6437 -1.3381 -1.4558 10 6 4.4800 -1.2625 -2.0787 11 6 4.2347 -1.4771 -3.5194 12 8 3.1085 -1.3760 -3.9659 13 7 5.2594 -1.7851 -4.3389 14 6 5.0163 -1.9974 -5.7678 15 6 6.3364 -2.3305 -6.4658 16 8 7.4038 -1.4517 -6.1047 17 6 6.2058 -2.5756 -7.9755 18 7 7.1691 -3.6769 -7.8274 19 6 8.0883 -4.2976 -8.6307 20 1 8.2190 -3.9730 -9.6525 21 6 8.8475 -5.3479 -8.1335 22 7 8.6879 -5.7438 -6.8885 23 14 10.0959 -6.1996 -9.2315 24 1 11.1059 -5.2127 -9.6908 25 1 10.7712 -7.2796 -8.4682 26 1 9.4033 -6.7832 -10.4084 27 6 6.7063 -3.8227 -6.4391 28 6 3.5230 -0.9321 -1.1046 29 6 2.0412 -0.7230 -1.2536 30 1 -0.3633 0.5140 0.8899 31 1 -0.3634 0.5137 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 1.8298 -1.7877 1.1651 34 1 1.5367 -0.3216 2.1303 35 1 3.9475 -1.1644 2.1638 36 1 3.7569 0.5302 1.6451 37 1 6.1580 -1.8661 -3.9825 38 1 4.5941 -1.0916 -6.2030 39 1 4.3172 -2.8234 -5.8986 40 1 7.4833 -1.2999 -5.1530 41 1 6.5790 -1.7511 -8.5829 42 1 5.2121 -2.9057 -8.2782 43 1 9.2187 -6.4774 -6.5410 44 1 5.8443 -4.4818 -6.3359 45 1 7.5059 -4.0608 -5.7378 46 1 1.5390 -1.6853 -1.3532 47 1 1.8450 -0.1131 -2.1354 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733508185.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:26 Heat of formation + Delta-G solvation = 38.937183 kcal Electronic energy + Delta-G solvation = -28736.082138 eV Core-core repulsion = 24729.035509 eV Total energy + Delta-G solvation = -4007.046629 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.04598 -39.64935 -38.48021 -37.84332 -34.94889 -33.88992 -32.96051 -31.99122 -31.81850 -30.01572 -28.53148 -26.78377 -26.15988 -24.73848 -23.78518 -23.68864 -21.86626 -21.38358 -20.19970 -19.35548 -19.27255 -18.00021 -17.53056 -16.65082 -16.22192 -15.90227 -15.45430 -15.09850 -14.95564 -14.70340 -14.51433 -14.01220 -13.94278 -13.85822 -13.53245 -13.42824 -13.20830 -13.03872 -12.75865 -12.65934 -12.37996 -12.18575 -11.97042 -11.78201 -11.26852 -11.04423 -11.02955 -10.87372 -10.85872 -10.72549 -10.65523 -10.42728 -10.10019 -9.78011 -9.52677 -9.46287 -9.08229 -8.85276 -8.80380 -8.76401 -6.86434 -5.73565 -3.05510 1.45948 1.89255 2.58609 3.22452 3.42954 3.43368 3.46174 3.47708 4.15793 4.26876 4.41894 4.46980 4.48061 4.57830 4.71873 4.88419 4.99402 5.02952 5.13479 5.17371 5.27963 5.29927 5.36367 5.41890 5.49884 5.54035 5.61323 5.64467 5.67485 5.81951 5.83605 5.88007 6.06746 6.09586 6.13737 6.31206 6.36013 6.44544 6.57567 6.59702 6.76947 7.04366 7.20604 7.45470 7.53755 7.73824 7.98835 8.17441 8.29431 9.05993 9.72905 10.64385 11.44113 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023972 B = 0.002272 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.758628 B =12321.496139 C =12897.781844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 H 0.072 0.928 4 C -0.110 4.110 5 C -0.047 4.047 6 C 0.007 3.993 7 N -0.373 5.373 8 H 0.445 0.555 9 N -0.259 5.259 10 C -0.003 4.003 11 C 0.604 3.396 12 O -0.531 6.531 13 N -0.711 5.711 14 C 0.108 3.892 15 C 0.057 3.943 16 O -0.522 6.522 17 C 0.135 3.865 18 N -0.600 5.600 19 C -0.213 4.213 20 H 0.082 0.918 21 C -0.009 4.009 22 N -0.922 5.922 23 Si 0.915 3.085 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.137 3.863 28 C -0.142 4.142 29 C -0.037 4.037 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.404 0.596 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.361 0.639 41 H 0.051 0.949 42 H 0.050 0.950 43 H 0.253 0.747 44 H 0.034 0.966 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.426 12.875 21.147 28.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 H 0.090 0.910 4 C -0.148 4.148 5 C -0.086 4.086 6 C -0.120 4.120 7 N -0.085 5.085 8 H 0.289 0.711 9 N -0.095 5.095 10 C -0.163 4.163 11 C 0.388 3.612 12 O -0.406 6.406 13 N -0.364 5.364 14 C -0.017 4.017 15 C 0.014 3.986 16 O -0.326 6.326 17 C 0.008 3.992 18 N -0.325 5.325 19 C -0.340 4.340 20 H 0.100 0.900 21 C -0.205 4.205 22 N -0.569 5.569 23 Si 0.745 3.255 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.212 1.212 27 C 0.010 3.990 28 C -0.152 4.152 29 C -0.075 4.075 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.240 0.760 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.208 0.792 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.051 0.949 45 H 0.095 0.905 46 H 0.095 0.905 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.746 12.466 19.788 26.635 hybrid contribution 0.774 -0.584 0.745 1.223 sum -11.972 11.882 20.533 26.573 Atomic orbital electron populations 1.21815 0.94693 1.02086 1.01808 1.21274 0.95823 0.99708 0.94425 0.90976 1.21637 0.93228 1.01633 0.98298 1.20223 0.95556 1.02100 0.90688 1.21162 0.85016 1.07629 0.98219 1.42968 1.08198 1.50476 1.06902 0.71089 1.73876 1.24731 1.19333 0.91544 1.21613 0.90233 1.09225 0.95215 1.16820 0.84684 0.76764 0.82953 1.90778 1.22191 1.51820 1.75810 1.45797 1.11051 1.70513 1.09010 1.21990 0.98568 1.02279 0.78849 1.23470 0.84317 0.93094 0.97710 1.86620 1.52129 1.66887 1.26921 1.22376 0.94078 0.91937 0.90856 1.45272 1.39324 1.37437 1.10496 1.18862 1.10612 1.11054 0.93483 0.90039 1.24789 1.00195 0.98822 0.96742 1.69805 1.43112 1.30093 1.13856 0.86152 0.81046 0.78984 0.79295 1.21041 1.21588 1.21155 1.22798 0.97398 0.89273 0.89508 1.19876 0.97309 1.07394 0.90629 1.20050 0.88385 1.01202 0.97872 0.92718 0.92302 0.92468 0.91211 0.90859 0.90253 0.89921 0.76049 0.90810 0.89983 0.79224 0.93061 0.93241 0.93660 0.94883 0.90523 0.90476 0.89737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.16 37.16 0.34 -0.56 16 2 C -0.09 -0.66 2.70 -90.31 -0.24 -0.91 16 3 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 4 C -0.11 -0.62 5.19 -26.47 -0.14 -0.75 16 5 C -0.05 -0.25 6.31 -27.67 -0.17 -0.42 16 6 C 0.01 0.06 7.12 -82.45 -0.59 -0.53 16 7 N -0.37 -3.27 6.82 33.42 0.23 -3.04 16 8 H 0.44 2.23 8.96 -190.21 -1.71 0.52 16 9 N -0.26 -3.16 11.96 33.28 0.40 -2.76 16 10 C 0.00 -0.04 7.12 -82.99 -0.59 -0.63 16 11 C 0.60 9.39 7.82 -12.39 -0.10 9.29 16 12 O -0.53 -9.36 15.80 5.30 0.08 -9.27 16 13 N -0.71 -10.56 5.34 -61.29 -0.33 -10.89 16 14 C 0.11 1.73 5.43 -4.04 -0.02 1.71 16 15 C 0.06 1.10 1.73 -89.97 -0.16 0.94 16 16 O -0.52 -10.15 13.56 -35.23 -0.48 -10.63 16 17 C 0.13 2.87 8.10 -8.51 -0.07 2.80 16 18 N -0.60 -16.00 3.78 -184.59 -0.70 -16.70 16 19 C -0.21 -6.18 10.75 -15.06 -0.16 -6.34 16 20 H 0.08 2.27 7.83 -52.49 -0.41 1.86 16 21 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 22 N -0.92 -27.94 11.50 55.49 0.64 -27.30 16 23 Si 0.92 22.67 29.55 -169.99 -5.02 17.65 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 27 C 0.14 3.25 6.85 -8.37 -0.06 3.20 16 28 C -0.14 -1.65 5.99 -104.87 -0.63 -2.28 16 29 C -0.04 -0.38 4.84 -27.79 -0.13 -0.51 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.44 8.12 -51.93 -0.42 0.01 16 34 H 0.07 0.29 8.11 -51.93 -0.42 -0.13 16 35 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.40 5.58 6.69 -40.82 -0.27 5.31 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.08 1.35 7.90 -51.93 -0.41 0.94 16 40 H 0.36 5.52 7.21 45.56 0.33 5.85 16 41 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.05 0.97 8.11 -51.93 -0.42 0.54 16 43 H 0.25 7.44 8.31 -40.82 -0.34 7.11 16 44 H 0.03 0.79 7.94 -51.93 -0.41 0.38 16 45 H 0.08 2.03 7.12 -51.93 -0.37 1.66 16 46 H 0.08 0.82 8.12 -51.93 -0.42 0.40 16 47 H 0.08 0.99 7.68 -51.93 -0.40 0.59 16 LS Contribution 381.45 15.07 5.75 5.75 Total: -1.00 -36.24 381.45 -10.10 -46.33 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -7.85 Total: 6.21 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -2.81 Total: 4.65 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: 0.24 Total: -60.69 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.39 Total: -19.90 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.24 -10.10 -46.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733508185.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.270 kcal (2) G-P(sol) polarization free energy of solvation -36.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds