Wall clock time and date at job start Tue Mar 31 2020 19:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46724 * 2 1 4 4 C 1.53109 * 109.46505 * 119.99337 * 2 1 3 5 5 C 1.53399 * 109.64263 * 190.06606 * 4 2 1 6 6 C 1.50713 * 108.33649 * 309.98745 * 5 4 2 7 7 N 1.34305 * 128.90630 * 196.69060 * 6 5 4 8 8 H 0.97005 * 124.98153 * 359.77021 * 7 6 5 9 9 N 1.28845 * 110.04588 * 179.80588 * 7 6 5 10 10 C 1.32211 * 110.14808 * 0.05798 * 9 7 6 11 11 C 1.47709 * 126.67814 * 179.97438 * 10 9 7 12 12 O 1.21572 * 120.00018 * 180.02562 * 11 10 9 13 13 N 1.34773 * 120.00390 * 0.02562 * 11 10 9 14 14 C 1.46497 * 120.00303 * 180.02562 * 13 11 10 15 15 C 1.53007 * 109.47002 * 179.97438 * 14 13 11 16 16 O 1.42896 * 113.28302 * 313.06664 * 15 14 13 17 17 C 1.53497 * 114.20425 * 179.97438 * 15 14 13 18 18 N 1.47062 * 87.98453 * 220.14915 * 17 15 14 19 19 C 1.36943 * 136.05579 * 207.08745 * 18 17 15 20 20 H 1.08002 * 119.99788 * 359.97438 * 19 18 17 21 21 C 1.38811 * 119.99622 * 180.27778 * 19 18 17 22 22 N 1.31614 * 120.00467 * 359.72375 * 21 19 18 23 23 Si 1.86801 * 119.99700 * 179.72266 * 21 19 18 24 24 H 1.48496 * 109.47031 * 59.99836 * 23 21 19 25 25 H 1.48497 * 109.47267 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47169 * 300.00118 * 23 21 19 27 27 C 1.47067 * 87.88602 * 27.34481 * 18 17 15 28 28 C 1.35590 * 123.87977 * 16.86819 * 6 5 4 29 29 C 1.50385 * 124.61637 * 359.76171 * 28 6 5 30 30 H 1.08997 * 109.46912 * 300.00940 * 1 2 3 31 31 H 1.09003 * 109.47180 * 60.00838 * 1 2 3 32 32 H 1.09003 * 109.47223 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.44143 * 70.00898 * 4 2 1 34 34 H 1.08998 * 109.41102 * 310.09353 * 4 2 1 35 35 H 1.09005 * 109.68799 * 190.28501 * 5 4 2 36 36 H 1.08998 * 109.72781 * 69.72316 * 5 4 2 37 37 H 0.97007 * 119.99473 * 0.02562 * 13 11 10 38 38 H 1.08995 * 109.47079 * 59.99988 * 14 13 11 39 39 H 1.09001 * 109.47087 * 299.99631 * 14 13 11 40 40 H 0.96700 * 114.00159 * 46.93727 * 16 15 14 41 41 H 1.09000 * 113.46436 * 105.36543 * 17 15 14 42 42 H 1.08997 * 113.51966 * 334.94328 * 17 15 14 43 43 H 0.96995 * 120.00147 * 180.02562 * 22 21 19 44 44 H 1.08994 * 113.46653 * 87.43736 * 27 18 17 45 45 H 1.08996 * 113.46465 * 217.87717 * 27 18 17 46 46 H 1.08996 * 109.89523 * 256.90928 * 29 28 6 47 47 H 1.08999 * 109.59314 * 136.28936 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0402 -0.7216 1.2503 5 6 3.5533 -0.5090 1.3870 6 6 4.1999 -0.8405 0.0667 7 7 5.4919 -1.0923 -0.2002 8 1 6.2062 -1.0890 0.4561 9 7 5.6437 -1.3381 -1.4558 10 6 4.4800 -1.2625 -2.0787 11 6 4.2347 -1.4771 -3.5194 12 8 3.1085 -1.3760 -3.9659 13 7 5.2594 -1.7851 -4.3389 14 6 5.0163 -1.9974 -5.7678 15 6 6.3364 -2.3305 -6.4658 16 8 7.4038 -1.4517 -6.1047 17 6 6.2058 -2.5756 -7.9755 18 7 7.1691 -3.6769 -7.8274 19 6 8.0883 -4.2976 -8.6307 20 1 8.2190 -3.9730 -9.6525 21 6 8.8475 -5.3479 -8.1335 22 7 8.6879 -5.7438 -6.8885 23 14 10.0959 -6.1996 -9.2315 24 1 11.1059 -5.2127 -9.6908 25 1 10.7712 -7.2796 -8.4682 26 1 9.4033 -6.7832 -10.4084 27 6 6.7063 -3.8227 -6.4391 28 6 3.5230 -0.9321 -1.1046 29 6 2.0412 -0.7230 -1.2536 30 1 -0.3633 0.5140 0.8899 31 1 -0.3634 0.5137 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 1.8298 -1.7877 1.1651 34 1 1.5367 -0.3216 2.1303 35 1 3.9475 -1.1644 2.1638 36 1 3.7569 0.5302 1.6451 37 1 6.1580 -1.8661 -3.9825 38 1 4.5941 -1.0916 -6.2030 39 1 4.3172 -2.8234 -5.8986 40 1 7.4833 -1.2999 -5.1530 41 1 6.5790 -1.7511 -8.5829 42 1 5.2121 -2.9057 -8.2782 43 1 9.2187 -6.4774 -6.5410 44 1 5.8443 -4.4818 -6.3359 45 1 7.5059 -4.0608 -5.7378 46 1 1.5390 -1.6853 -1.3532 47 1 1.8450 -0.1131 -2.1354 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733508185.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:25 Heat of formation + Delta-G solvation = 10.625758 kcal Electronic energy + Delta-G solvation = -28737.309814 eV Core-core repulsion = 24729.035509 eV Total energy + Delta-G solvation = -4008.274305 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.86667 -41.12962 -39.96932 -38.43497 -36.61727 -35.27639 -34.10629 -33.70714 -32.48984 -30.90014 -30.09830 -28.01442 -27.32113 -26.55641 -25.05969 -24.24779 -23.51641 -22.11543 -21.40184 -20.97612 -20.01966 -19.03960 -18.68776 -18.42006 -17.29334 -17.19916 -16.98337 -16.49295 -16.10917 -15.82458 -15.62586 -15.49219 -15.14183 -14.98034 -14.63773 -14.52740 -14.37071 -14.10982 -13.94244 -13.85037 -13.46771 -13.42124 -13.02477 -12.93770 -12.80192 -12.52101 -12.45962 -12.29406 -11.87949 -11.79920 -11.67101 -11.57496 -11.42121 -11.35618 -11.03889 -10.94788 -10.69944 -10.45136 -10.10712 -9.61851 -8.96485 -7.92610 -5.26250 0.46742 1.08807 1.43678 1.48363 1.54075 1.80589 2.13573 2.30436 2.45408 3.00929 3.27647 3.30085 3.36252 3.56960 3.61960 3.83142 3.87895 3.96293 4.12342 4.27923 4.29666 4.36967 4.53402 4.62176 4.66666 4.71547 4.75070 4.77456 4.85844 4.91443 4.95615 5.01537 5.05422 5.11484 5.13372 5.19912 5.24252 5.29316 5.33421 5.45030 5.47544 5.50871 5.59367 5.88912 6.09763 6.33673 6.73949 6.84086 6.87574 7.08223 7.56513 8.55329 9.24730 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023972 B = 0.002272 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.758628 B =12321.496139 C =12897.781844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 H 0.075 0.925 4 C -0.108 4.108 5 C -0.045 4.045 6 C 0.028 3.972 7 N -0.355 5.355 8 H 0.462 0.538 9 N -0.275 5.275 10 C -0.033 4.033 11 C 0.602 3.398 12 O -0.558 6.558 13 N -0.707 5.707 14 C 0.122 3.878 15 C 0.091 3.909 16 O -0.537 6.537 17 C 0.130 3.870 18 N -0.635 5.635 19 C -0.229 4.229 20 H 0.086 0.914 21 C -0.070 4.070 22 N -0.954 5.954 23 Si 0.984 3.016 24 H -0.276 1.276 25 H -0.293 1.293 26 H -0.275 1.275 27 C 0.135 3.865 28 C -0.169 4.169 29 C -0.035 4.035 30 H 0.072 0.928 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.409 0.591 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.380 0.620 41 H 0.055 0.945 42 H 0.075 0.925 43 H 0.249 0.751 44 H 0.028 0.972 45 H 0.043 0.957 46 H 0.063 0.937 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.699 14.105 23.140 30.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.107 4.107 3 H 0.093 0.907 4 C -0.146 4.146 5 C -0.083 4.083 6 C -0.101 4.101 7 N -0.071 5.071 8 H 0.310 0.690 9 N -0.112 5.112 10 C -0.191 4.191 11 C 0.388 3.612 12 O -0.435 6.435 13 N -0.360 5.360 14 C -0.003 4.003 15 C 0.048 3.952 16 O -0.343 6.343 17 C 0.005 3.995 18 N -0.361 5.361 19 C -0.357 4.357 20 H 0.103 0.897 21 C -0.262 4.262 22 N -0.602 5.602 23 Si 0.812 3.188 24 H -0.202 1.202 25 H -0.219 1.219 26 H -0.201 1.201 27 C 0.008 3.992 28 C -0.180 4.180 29 C -0.073 4.073 30 H 0.091 0.909 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.118 0.882 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.245 0.755 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.229 0.771 41 H 0.073 0.927 42 H 0.093 0.907 43 H 0.057 0.943 44 H 0.046 0.954 45 H 0.061 0.939 46 H 0.082 0.918 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.014 13.730 21.795 28.860 hybrid contribution 0.840 -0.913 0.191 1.255 sum -12.174 12.816 21.985 28.210 Atomic orbital electron populations 1.21807 0.94085 1.02082 1.02287 1.21246 0.96325 0.99510 0.93643 0.90706 1.21658 0.93666 1.01081 0.98223 1.20452 0.94876 1.03986 0.89003 1.21689 0.84470 1.04962 0.98954 1.43078 1.09041 1.48718 1.06235 0.68970 1.73796 1.24342 1.20100 0.92997 1.21457 0.91642 1.11496 0.94545 1.17109 0.84182 0.76006 0.83891 1.90751 1.23128 1.53087 1.76559 1.45711 1.11353 1.70507 1.08444 1.21734 0.96268 1.02782 0.79475 1.22949 0.85442 0.90043 0.96785 1.86570 1.52466 1.66364 1.28874 1.22609 0.94051 0.90531 0.92342 1.45638 1.40232 1.38671 1.11523 1.19283 1.11165 1.11180 0.94082 0.89660 1.25693 1.02473 0.99844 0.98240 1.70004 1.44182 1.30501 1.15530 0.85068 0.78536 0.77653 0.77560 1.20238 1.21871 1.20077 1.22783 0.95992 0.92513 0.87892 1.20159 0.97849 1.08637 0.91311 1.20008 0.88073 1.00471 0.98790 0.90863 0.93197 0.92731 0.91986 0.88239 0.87625 0.87722 0.75480 0.89436 0.90173 0.77130 0.92657 0.90731 0.94269 0.95388 0.93878 0.91818 0.92156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.16 71.98 0.66 -0.94 16 2 C -0.09 -1.13 2.70 -10.60 -0.03 -1.16 16 3 H 0.07 0.92 8.12 -2.39 -0.02 0.90 16 4 C -0.11 -0.88 5.19 30.76 0.16 -0.72 16 5 C -0.04 -0.30 6.31 29.99 0.19 -0.11 16 6 C 0.03 0.43 7.12 41.57 0.30 0.72 16 7 N -0.36 -5.54 6.82 -48.18 -0.33 -5.87 16 8 H 0.46 3.41 8.96 -219.79 -1.97 1.44 16 9 N -0.27 -6.53 11.96 -48.62 -0.58 -7.11 16 10 C -0.03 -0.92 7.12 42.14 0.30 -0.62 16 11 C 0.60 19.12 7.82 86.75 0.68 19.80 16 12 O -0.56 -20.26 15.80 -3.94 -0.06 -20.32 16 13 N -0.71 -21.11 5.34 -466.11 -2.49 -23.60 16 14 C 0.12 3.88 5.43 86.38 0.47 4.35 16 15 C 0.09 3.48 1.73 -10.37 -0.02 3.46 16 16 O -0.54 -20.65 13.56 -148.98 -2.02 -22.67 16 17 C 0.13 5.51 8.10 83.18 0.67 6.18 16 18 N -0.64 -34.31 3.78 -738.42 -2.79 -37.10 16 19 C -0.23 -13.47 10.75 84.03 0.90 -12.57 16 20 H 0.09 4.77 7.83 -2.91 -0.02 4.75 16 21 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 22 N -0.95 -59.34 11.50 21.65 0.25 -59.09 16 23 Si 0.98 47.16 29.55 68.60 2.03 49.19 16 24 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 25 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 26 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 27 C 0.13 6.57 6.85 83.27 0.57 7.14 16 28 C -0.17 -3.87 5.99 -20.03 -0.12 -3.99 16 29 C -0.04 -0.74 4.84 29.91 0.14 -0.59 16 30 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.06 0.63 8.12 -2.39 -0.02 0.61 16 34 H 0.10 0.36 8.11 -2.39 -0.02 0.34 16 35 H 0.11 0.26 8.14 -2.38 -0.02 0.24 16 36 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 37 H 0.41 11.36 6.69 -92.70 -0.62 10.74 16 38 H 0.09 2.61 8.14 -2.39 -0.02 2.60 16 39 H 0.08 2.62 7.90 -2.39 -0.02 2.60 16 40 H 0.38 11.42 7.21 -74.06 -0.53 10.89 16 41 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 42 H 0.08 2.81 8.11 -2.39 -0.02 2.79 16 43 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 44 H 0.03 1.39 7.94 -2.39 -0.02 1.37 16 45 H 0.04 2.38 7.12 -2.39 -0.02 2.36 16 46 H 0.06 1.44 8.12 -2.39 -0.02 1.42 16 47 H 0.06 1.51 7.68 -2.39 -0.02 1.49 16 Total: -1.00 -80.65 381.45 -2.75 -83.41 By element: Atomic # 1 Polarization: 27.95 SS G_CDS: -2.10 Total: 25.85 kcal Atomic # 6 Polarization: 11.97 SS G_CDS: 5.34 Total: 17.32 kcal Atomic # 7 Polarization: -126.83 SS G_CDS: -5.94 Total: -132.77 kcal Atomic # 8 Polarization: -40.91 SS G_CDS: -2.08 Total: -42.99 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Total: -80.65 -2.75 -83.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733508185.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.033 kcal (2) G-P(sol) polarization free energy of solvation -80.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds