Wall clock time and date at job start Tue Mar 31 2020 19:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.42497 * 2 1 4 4 C 1.53391 * 109.42568 * 119.89418 * 2 1 3 5 5 C 1.50880 * 108.18951 * 170.62081 * 4 2 1 6 6 C 1.34575 * 128.32828 * 163.26126 * 5 4 2 7 7 N 1.35189 * 107.61898 * 180.28280 * 6 5 4 8 8 H 0.97001 * 126.00220 * 179.97438 * 7 6 5 9 9 N 1.40312 * 107.99581 * 359.95713 * 7 6 5 10 10 C 1.30125 * 108.12036 * 359.96304 * 9 7 6 11 11 C 1.50952 * 128.28168 * 180.14032 * 10 9 7 12 12 H 1.08999 * 109.72066 * 43.62167 * 11 10 9 13 13 C 1.50702 * 109.71332 * 283.02125 * 11 10 9 14 14 O 1.21285 * 119.99949 * 240.60632 * 13 11 10 15 15 N 1.34779 * 120.00141 * 60.60577 * 13 11 10 16 16 C 1.46500 * 120.00155 * 179.97438 * 15 13 11 17 17 C 1.52998 * 109.46753 * 180.02562 * 16 15 13 18 18 O 1.42902 * 113.41747 * 313.20219 * 17 16 15 19 19 C 1.53504 * 114.20339 * 180.02562 * 17 16 15 20 20 N 1.47066 * 88.04678 * 220.37609 * 19 17 16 21 21 C 1.36941 * 136.05541 * 207.05070 * 20 19 17 22 22 H 1.07998 * 119.99878 * 0.02562 * 21 20 19 23 23 C 1.38809 * 119.99593 * 180.02562 * 21 20 19 24 24 N 1.31622 * 120.00459 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 119.99771 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46960 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46905 * 120.00013 * 25 23 21 28 28 H 1.48490 * 109.47336 * 239.99860 * 25 23 21 29 29 C 1.47064 * 87.88659 * 27.09306 * 20 19 17 30 30 C 1.53118 * 109.41681 * 240.16305 * 2 1 3 31 31 H 1.08999 * 109.47286 * 300.10581 * 1 2 3 32 32 H 1.09002 * 109.47078 * 60.10817 * 1 2 3 33 33 H 1.09001 * 109.46883 * 180.09900 * 1 2 3 34 34 H 1.08996 * 109.71878 * 50.94267 * 4 2 1 35 35 H 1.09000 * 109.75312 * 290.31267 * 4 2 1 36 36 H 1.08004 * 126.18209 * 0.23472 * 6 5 4 37 37 H 0.97001 * 119.99746 * 0.02562 * 15 13 11 38 38 H 1.09008 * 109.46824 * 60.00705 * 16 15 13 39 39 H 1.08993 * 109.47531 * 300.00334 * 16 15 13 40 40 H 0.96697 * 113.99512 * 46.80858 * 18 17 16 41 41 H 1.09002 * 113.46865 * 105.56705 * 19 17 16 42 42 H 1.08999 * 113.46581 * 335.18480 * 19 17 16 43 43 H 0.97000 * 120.00117 * 180.02562 * 24 23 21 44 44 H 1.08999 * 113.47096 * 87.65665 * 29 20 19 45 45 H 1.09005 * 113.46966 * 218.04058 * 29 20 19 46 46 H 1.09002 * 109.48206 * 48.12757 * 30 2 1 47 47 H 1.09001 * 109.42132 * 288.26890 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8926 1.0280 0.0000 4 6 2.0402 -0.7210 1.2541 5 6 3.5306 -0.9105 1.1150 6 6 4.4275 -1.2054 2.0739 7 7 5.6446 -1.2719 1.4893 8 1 6.4824 -1.4678 1.9373 9 7 5.4832 -1.0081 0.1207 10 6 4.2195 -0.7934 -0.1037 11 6 3.5441 -0.4715 -1.4147 12 1 3.9400 -1.1151 -2.2002 13 6 3.7868 0.9727 -1.7705 14 8 2.8495 1.7323 -1.8954 15 7 5.0454 1.4203 -1.9498 16 6 5.2813 2.8240 -2.2962 17 6 6.7847 3.0675 -2.4422 18 8 7.5558 2.5160 -1.3728 19 6 7.1560 4.5120 -2.8055 20 7 8.1741 3.9678 -3.7167 21 6 9.3715 4.3953 -4.2255 22 1 9.7593 5.3652 -3.9513 23 6 10.0866 3.5818 -5.0936 24 7 9.6137 2.3999 -5.4281 25 14 11.7204 4.1646 -5.7872 26 1 12.0275 5.5183 -5.2595 27 1 12.7940 3.2213 -5.3839 28 1 11.6386 4.2171 -7.2689 29 6 7.3399 2.7631 -3.8418 30 6 2.0391 -0.7185 -1.2527 31 1 -0.3634 0.5155 0.8890 32 1 -0.3633 0.5122 -0.8910 33 1 -0.3633 -1.0277 0.0018 34 1 1.5528 -1.6917 1.3441 35 1 1.8269 -0.1191 2.1375 36 1 4.2136 -1.3602 3.1212 37 1 5.7950 0.8127 -1.8503 38 1 4.8840 3.4643 -1.5086 39 1 4.7832 3.0546 -3.2378 40 1 7.3195 1.6061 -1.1462 41 1 7.5759 5.0750 -1.9719 42 1 6.3580 5.0495 -3.3176 43 1 10.1137 1.8313 -6.0345 44 1 6.5903 2.8340 -4.6299 45 1 7.9162 1.8391 -3.8903 46 1 1.5130 -0.3388 -2.1286 47 1 1.8556 -1.7886 -1.1564 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733508948.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:02 Heat of formation + Delta-G solvation = 16.318586 kcal Electronic energy + Delta-G solvation = -29592.055119 eV Core-core repulsion = 25584.027674 eV Total energy + Delta-G solvation = -4008.027445 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.59590 -41.18056 -40.26640 -37.71780 -36.58526 -35.27334 -34.13757 -33.69781 -31.79064 -30.86922 -30.23447 -27.92152 -26.92360 -26.58201 -25.27770 -23.77762 -22.48844 -21.71182 -21.55040 -21.07896 -20.12184 -18.88562 -18.50832 -18.14179 -17.44963 -17.17865 -16.59935 -16.51712 -15.97257 -15.80374 -15.55400 -15.46499 -15.11894 -15.00065 -14.59475 -14.47565 -14.30489 -14.00979 -13.93131 -13.57409 -13.30021 -13.21829 -13.05160 -12.99184 -12.87088 -12.58307 -12.53651 -12.21754 -11.99088 -11.82761 -11.63292 -11.53654 -11.39144 -11.15976 -11.02457 -10.97893 -10.71182 -10.27548 -10.11669 -9.30616 -8.97439 -7.93770 -5.27339 0.94571 1.43294 1.45180 1.46523 1.55454 1.74032 2.03416 2.19759 2.44029 2.97269 3.27759 3.31882 3.47122 3.54309 3.60956 3.82026 3.86817 3.97276 4.10382 4.30817 4.34594 4.40797 4.56017 4.63242 4.64484 4.70239 4.73992 4.77786 4.88524 4.90235 4.93732 4.98552 5.07619 5.11688 5.12543 5.23126 5.28850 5.31132 5.41207 5.44113 5.48712 5.67039 5.70485 5.87601 6.38262 6.50808 6.69592 6.71250 6.86770 7.14124 7.55218 8.54002 9.23802 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019742 B = 0.002768 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.946674 B =10112.392655 C =10781.257200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.092 4.092 3 H 0.052 0.948 4 C -0.031 4.031 5 C -0.250 4.250 6 C 0.074 3.926 7 N -0.472 5.472 8 H 0.452 0.548 9 N -0.312 5.312 10 C 0.070 3.930 11 C -0.025 4.025 12 H 0.123 0.877 13 C 0.526 3.474 14 O -0.558 6.558 15 N -0.718 5.718 16 C 0.123 3.877 17 C 0.089 3.911 18 O -0.537 6.537 19 C 0.130 3.870 20 N -0.634 5.634 21 C -0.229 4.229 22 H 0.085 0.915 23 C -0.068 4.068 24 N -0.952 5.952 25 Si 0.984 3.016 26 H -0.265 1.265 27 H -0.291 1.291 28 H -0.289 1.289 29 C 0.136 3.864 30 C -0.087 4.087 31 H 0.059 0.941 32 H 0.046 0.954 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.216 0.784 37 H 0.405 0.595 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.377 0.623 41 H 0.052 0.948 42 H 0.075 0.925 43 H 0.249 0.751 44 H 0.030 0.970 45 H 0.043 0.957 46 H 0.073 0.927 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.980 -11.751 17.582 27.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.111 4.111 3 H 0.070 0.930 4 C -0.069 4.069 5 C -0.261 4.261 6 C -0.072 4.072 7 N -0.183 5.183 8 H 0.299 0.701 9 N -0.135 5.135 10 C -0.098 4.098 11 C -0.049 4.049 12 H 0.140 0.860 13 C 0.312 3.688 14 O -0.437 6.437 15 N -0.371 5.371 16 C -0.002 4.002 17 C 0.046 3.954 18 O -0.343 6.343 19 C 0.004 3.996 20 N -0.359 5.359 21 C -0.357 4.357 22 H 0.103 0.897 23 C -0.261 4.261 24 N -0.600 5.600 25 Si 0.811 3.189 26 H -0.189 1.189 27 H -0.218 1.218 28 H -0.216 1.216 29 C 0.009 3.991 30 C -0.126 4.126 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.233 0.767 37 H 0.241 0.759 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.226 0.774 41 H 0.071 0.929 42 H 0.092 0.908 43 H 0.058 0.942 44 H 0.048 0.952 45 H 0.061 0.939 46 H 0.092 0.908 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.875 -10.658 16.790 26.082 hybrid contribution 1.055 -0.528 -0.253 1.206 sum -15.821 -11.186 16.537 25.474 Atomic orbital electron populations 1.21737 0.93712 1.02429 1.01691 1.21168 0.96588 0.99124 0.94203 0.92991 1.20095 0.88183 1.00988 0.97605 1.20413 0.98615 1.15197 0.91904 1.22681 0.84288 0.99531 1.00712 1.46379 1.09803 1.56840 1.05239 0.70141 1.76930 1.18206 1.23388 0.95018 1.21828 0.91202 1.00823 0.95975 1.19932 0.98704 0.92421 0.93800 0.85964 1.20678 0.82064 0.90413 0.75597 1.90670 1.42700 1.58285 1.52025 1.45928 1.08770 1.11392 1.70977 1.21635 0.93906 0.82806 1.01862 1.22943 0.87897 0.96963 0.87555 1.86563 1.62561 1.32751 1.52436 1.22606 0.91537 0.92883 0.92558 1.45604 1.18010 1.18367 1.53930 1.19345 0.94073 1.00977 1.21295 0.89734 1.25675 1.02756 0.96959 1.00708 1.70016 1.40083 1.10836 1.39093 0.84937 0.78712 0.77768 0.77452 1.18933 1.21818 1.21637 1.22746 0.91356 0.92253 0.92704 1.21501 0.89885 1.01866 0.99299 0.92171 0.93487 0.91203 0.89512 0.90393 0.76702 0.75908 0.90377 0.90223 0.77431 0.92933 0.90805 0.94250 0.95238 0.93887 0.90812 0.88936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.15 71.98 0.66 -1.30 16 2 C -0.09 -1.64 2.49 -10.62 -0.03 -1.67 16 3 H 0.05 1.28 6.29 -2.39 -0.02 1.27 16 4 C -0.03 -0.42 5.57 30.04 0.17 -0.25 16 5 C -0.25 -4.30 5.89 -20.10 -0.12 -4.42 16 6 C 0.07 0.94 11.95 83.34 1.00 1.93 16 7 N -0.47 -7.29 7.37 -57.88 -0.43 -7.71 16 8 H 0.45 4.40 8.96 -213.18 -1.91 2.49 16 9 N -0.31 -7.00 12.47 -47.14 -0.59 -7.59 16 10 C 0.07 1.50 6.20 43.44 0.27 1.77 16 11 C -0.03 -0.55 3.06 -12.08 -0.04 -0.59 16 12 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 13 C 0.53 14.69 6.77 87.66 0.59 15.28 16 14 O -0.56 -18.38 14.39 -3.05 -0.04 -18.43 16 15 N -0.72 -20.49 5.25 -463.05 -2.43 -22.92 16 16 C 0.12 3.91 5.43 86.38 0.47 4.38 16 17 C 0.09 3.45 1.73 -10.42 -0.02 3.43 16 18 O -0.54 -21.17 13.56 -148.98 -2.02 -23.19 16 19 C 0.13 5.53 8.11 83.18 0.67 6.20 16 20 N -0.63 -34.17 3.78 -738.18 -2.79 -36.97 16 21 C -0.23 -13.45 10.75 84.03 0.90 -12.54 16 22 H 0.08 4.75 7.83 -2.91 -0.02 4.73 16 23 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 24 N -0.95 -58.87 11.51 21.65 0.25 -58.62 16 25 Si 0.98 47.07 29.55 68.60 2.03 49.10 16 26 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 27 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 28 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 29 C 0.14 6.61 6.83 83.22 0.57 7.18 16 30 C -0.09 -1.59 4.28 30.76 0.13 -1.45 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.09 0.89 8.13 -2.39 -0.02 0.87 16 35 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.22 0.78 8.06 -2.91 -0.02 0.76 16 37 H 0.40 11.14 6.66 -92.71 -0.62 10.52 16 38 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 39 H 0.08 2.59 7.89 -2.39 -0.02 2.57 16 40 H 0.38 12.15 7.21 -74.06 -0.53 11.61 16 41 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.07 2.80 8.10 -2.39 -0.02 2.78 16 43 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 44 H 0.03 1.45 7.93 -2.39 -0.02 1.43 16 45 H 0.04 2.36 7.12 -2.38 -0.02 2.35 16 46 H 0.07 1.46 7.77 -2.39 -0.02 1.44 16 47 H 0.09 1.29 8.10 -2.39 -0.02 1.27 16 Total: -1.00 -78.71 378.27 -2.37 -81.08 By element: Atomic # 1 Polarization: 32.89 SS G_CDS: -2.04 Total: 30.85 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: 5.70 Total: 14.40 kcal Atomic # 7 Polarization: -127.82 SS G_CDS: -5.99 Total: -133.81 kcal Atomic # 8 Polarization: -39.55 SS G_CDS: -2.06 Total: -41.61 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -78.71 -2.37 -81.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733508948.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.396 kcal (2) G-P(sol) polarization free energy of solvation -78.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds