Wall clock time and date at job start Tue Mar 31 2020 19:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.43402 * 2 1 4 4 C 1.53384 * 109.43254 * 240.09813 * 2 1 3 5 5 C 1.50888 * 108.19139 * 189.41733 * 4 2 1 6 6 C 1.34571 * 128.32232 * 196.70833 * 5 4 2 7 7 N 1.35200 * 107.61456 * 179.84052 * 6 5 4 8 8 H 0.96999 * 126.00343 * 179.72780 * 7 6 5 9 9 N 1.40317 * 107.99313 * 359.97438 * 7 6 5 10 10 C 1.30128 * 108.12283 * 0.06366 * 9 7 6 11 11 C 1.50954 * 128.28959 * 179.80878 * 10 9 7 12 12 H 1.08997 * 109.71670 * 77.06477 * 11 10 9 13 13 C 1.50701 * 109.70950 * 316.42484 * 11 10 9 14 14 O 1.21286 * 119.99903 * 241.24625 * 13 11 10 15 15 N 1.34777 * 120.00529 * 61.24648 * 13 11 10 16 16 C 1.46494 * 120.00185 * 179.97438 * 15 13 11 17 17 C 1.53006 * 109.47069 * 180.02562 * 16 15 13 18 18 O 1.42897 * 112.94176 * 55.33477 * 17 16 15 19 19 C 1.53941 * 113.73936 * 283.74103 * 17 16 15 20 20 N 1.47809 * 86.03514 * 222.08346 * 19 17 16 21 21 C 1.36942 * 134.45366 * 204.64088 * 20 19 17 22 22 H 1.07996 * 119.99694 * 173.34924 * 21 20 19 23 23 C 1.38807 * 120.00294 * 353.35806 * 21 20 19 24 24 N 1.31618 * 119.99851 * 5.05275 * 23 21 20 25 25 Si 1.86801 * 120.00059 * 185.06235 * 23 21 20 26 26 H 1.48501 * 109.47268 * 94.98061 * 25 23 21 27 27 H 1.48500 * 109.46915 * 214.98406 * 25 23 21 28 28 H 1.48497 * 109.47098 * 334.98409 * 25 23 21 29 29 C 1.47580 * 91.05256 * 24.55465 * 20 19 17 30 30 C 1.53031 * 109.38980 * 119.87111 * 2 1 3 31 31 H 1.09000 * 109.47191 * 179.90137 * 1 2 3 32 32 H 1.09005 * 109.47288 * 299.90360 * 1 2 3 33 33 H 1.08997 * 109.46946 * 59.90030 * 1 2 3 34 34 H 1.08998 * 109.72138 * 69.73874 * 4 2 1 35 35 H 1.08997 * 109.71939 * 309.08995 * 4 2 1 36 36 H 1.07994 * 126.19791 * 359.82558 * 6 5 4 37 37 H 0.96998 * 119.99477 * 0.02562 * 15 13 11 38 38 H 1.09002 * 109.47487 * 300.00401 * 16 15 13 39 39 H 1.09002 * 109.47142 * 60.00702 * 16 15 13 40 40 H 0.96700 * 114.00238 * 309.66600 * 18 17 16 41 41 H 1.09000 * 113.77087 * 336.35195 * 19 17 16 42 42 H 1.09005 * 113.76788 * 107.74649 * 19 17 16 43 43 H 0.97010 * 119.99836 * 180.02562 * 24 23 21 44 44 H 1.08999 * 113.76797 * 221.15173 * 29 20 19 45 45 H 1.08992 * 113.77149 * 89.74824 * 29 20 19 46 46 H 1.09002 * 109.42275 * 311.86257 * 30 2 1 47 47 H 1.08999 * 109.42335 * 71.68705 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8926 1.0279 0.0000 4 6 2.0403 -0.7211 -1.2539 5 6 3.5306 -0.9113 -1.1142 6 6 4.4275 -1.2072 -2.0728 7 7 5.6442 -1.2768 -1.4873 8 1 6.4813 -1.4780 -1.9341 9 7 5.4823 -1.0125 -0.1188 10 6 4.2190 -0.7950 0.1048 11 6 3.5431 -0.4725 1.4155 12 1 3.7195 0.5718 1.6730 13 6 4.0884 -1.3638 2.5014 14 8 3.3491 -2.1237 3.0905 15 7 5.3976 -1.3166 2.8180 16 6 5.9275 -2.1827 3.8740 17 6 7.4287 -1.9330 4.0330 18 8 7.7421 -0.5608 4.2797 19 6 8.2844 -2.5749 2.9260 20 7 9.2129 -2.9606 4.0094 21 6 10.5506 -3.2473 4.0692 22 1 11.0268 -3.4046 5.0257 23 6 11.2946 -3.3355 2.9007 24 7 10.7386 -3.0464 1.7432 25 14 13.0847 -3.8647 2.9708 26 1 13.1791 -5.3257 2.7221 27 1 13.8575 -3.1350 1.9337 28 1 13.6405 -3.5540 4.3123 29 6 8.1205 -2.9105 5.0004 30 6 2.0380 -0.7189 1.2517 31 1 -0.3633 -1.0277 -0.0018 32 1 -0.3634 0.5124 0.8909 33 1 -0.3633 0.5154 -0.8891 34 1 1.8275 -0.1185 -2.1369 35 1 1.5525 -1.6916 -1.3441 36 1 4.2142 -1.3614 -3.1202 37 1 5.9888 -0.7086 2.3471 38 1 5.4213 -1.9615 4.8137 39 1 5.7587 -3.2260 3.6072 40 1 7.3328 0.0544 3.6560 41 1 7.8049 -3.4222 2.4357 42 1 8.7033 -1.8558 2.2219 43 1 11.2584 -3.1084 0.9265 44 1 8.4088 -2.4589 5.9496 45 1 7.5929 -3.8566 5.1209 46 1 1.5112 -0.3388 2.1270 47 1 1.8537 -1.7889 1.1552 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733508951.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:11 Heat of formation + Delta-G solvation = 37.027587 kcal Electronic energy + Delta-G solvation = -29556.538300 eV Core-core repulsion = 25549.408865 eV Total energy + Delta-G solvation = -4007.129435 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.72974 -39.75023 -38.60823 -37.08566 -34.79063 -33.93605 -32.89928 -31.91861 -31.08531 -29.95541 -28.47935 -26.36254 -26.10437 -24.95572 -24.21491 -22.11816 -21.52828 -20.89533 -20.27941 -19.29197 -18.99331 -17.81895 -17.32052 -16.61508 -16.06225 -15.84799 -15.47909 -14.99663 -14.80089 -14.56259 -14.29570 -14.07485 -13.98600 -13.71194 -13.44971 -13.25448 -13.12031 -12.63084 -12.59435 -12.58661 -12.23248 -12.19482 -11.75856 -11.63473 -11.40604 -11.03707 -10.92635 -10.90221 -10.81144 -10.69815 -10.57568 -10.38672 -10.02379 -9.75454 -9.49951 -9.32641 -9.12247 -8.79613 -8.78336 -8.54937 -6.84831 -5.75610 -3.06068 1.79545 2.43822 2.66713 2.91785 3.33218 3.40476 3.45387 3.47322 4.21661 4.41450 4.46258 4.58624 4.61665 4.65835 4.87199 4.93648 5.05679 5.14647 5.20388 5.28435 5.33267 5.37649 5.42276 5.45340 5.52772 5.62146 5.63421 5.72970 5.81161 5.84208 5.89673 6.00601 6.07530 6.12284 6.26505 6.36515 6.45644 6.51625 6.61032 6.66086 7.10236 7.19894 7.21839 7.53780 7.55924 7.64688 7.98360 8.18803 8.35387 9.05938 9.72451 10.60707 11.42005 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017192 B = 0.003034 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.272376 B = 9225.656141 C =10503.432549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.073 0.927 4 C -0.035 4.035 5 C -0.232 4.232 6 C 0.060 3.940 7 N -0.473 5.473 8 H 0.443 0.557 9 N -0.267 5.267 10 C 0.077 3.923 11 C -0.024 4.024 12 H 0.113 0.887 13 C 0.523 3.477 14 O -0.542 6.542 15 N -0.713 5.713 16 C 0.103 3.897 17 C 0.064 3.936 18 O -0.528 6.528 19 C 0.153 3.847 20 N -0.604 5.604 21 C -0.217 4.217 22 H 0.081 0.919 23 C -0.009 4.009 24 N -0.920 5.920 25 Si 0.911 3.089 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.280 1.280 29 C 0.136 3.864 30 C -0.091 4.091 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.176 0.824 37 H 0.404 0.596 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.362 0.638 41 H 0.034 0.966 42 H 0.074 0.926 43 H 0.252 0.748 44 H 0.054 0.946 45 H 0.049 0.951 46 H 0.077 0.923 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.459 8.295 -8.874 23.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.091 0.909 4 C -0.073 4.073 5 C -0.244 4.244 6 C -0.086 4.086 7 N -0.182 5.182 8 H 0.288 0.712 9 N -0.089 5.089 10 C -0.092 4.092 11 C -0.047 4.047 12 H 0.131 0.869 13 C 0.308 3.692 14 O -0.419 6.419 15 N -0.364 5.364 16 C -0.021 4.021 17 C 0.022 3.978 18 O -0.331 6.331 19 C 0.027 3.973 20 N -0.329 5.329 21 C -0.345 4.345 22 H 0.099 0.901 23 C -0.205 4.205 24 N -0.567 5.567 25 Si 0.741 3.259 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.205 1.205 29 C 0.009 3.991 30 C -0.129 4.129 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.193 0.807 37 H 0.239 0.761 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.208 0.792 41 H 0.051 0.949 42 H 0.092 0.908 43 H 0.062 0.938 44 H 0.073 0.927 45 H 0.067 0.933 46 H 0.096 0.904 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -19.112 7.344 -7.561 21.826 hybrid contribution 0.806 -0.033 -1.564 1.760 sum -18.306 7.312 -9.125 21.722 Atomic orbital electron populations 1.21817 0.94706 1.02081 1.01742 1.21176 0.95615 0.99731 0.94332 0.90860 1.20054 0.89295 1.00336 0.97643 1.20012 0.97201 1.15073 0.92102 1.22055 0.85466 1.01761 0.99324 1.46356 1.08902 1.56952 1.05961 0.71184 1.77087 1.17506 1.21159 0.93140 1.21808 0.91126 1.00945 0.95308 1.19911 0.96109 1.00571 0.88136 0.86894 1.20204 0.82234 0.83353 0.83383 1.90689 1.57910 1.39753 1.53534 1.45897 1.09085 1.42790 1.38671 1.22022 0.94571 0.95204 0.90338 1.23735 0.89399 0.83407 1.01297 1.86588 1.75017 1.14999 1.56517 1.22802 0.87118 0.95854 0.91537 1.45724 1.02623 1.80821 1.03780 1.19004 0.81762 1.40693 0.93023 0.90143 1.24797 0.98406 1.02110 0.95182 1.69846 1.35705 1.53957 0.97175 0.86110 0.84406 0.78190 0.77172 1.21698 1.21772 1.20524 1.22554 0.88596 0.93782 0.94172 1.21474 0.91012 1.02488 0.97961 0.92455 0.92455 0.92617 0.91249 0.91176 0.80724 0.76095 0.91190 0.90551 0.79179 0.94853 0.90819 0.93848 0.92731 0.93326 0.90397 0.90327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.15 37.16 0.34 -0.56 16 2 C -0.09 -0.68 2.66 -90.41 -0.24 -0.92 16 3 H 0.07 0.54 8.10 -51.93 -0.42 0.11 16 4 C -0.04 -0.27 5.57 -27.59 -0.15 -0.43 16 5 C -0.23 -2.38 5.89 -104.98 -0.62 -3.00 16 6 C 0.06 0.54 11.95 -17.36 -0.21 0.33 16 7 N -0.47 -5.18 7.37 30.35 0.22 -4.96 16 8 H 0.44 3.94 8.96 -182.43 -1.64 2.31 16 9 N -0.27 -3.68 11.56 33.75 0.39 -3.29 16 10 C 0.08 0.95 6.39 -82.34 -0.53 0.42 16 11 C -0.02 -0.27 2.90 -92.60 -0.27 -0.54 16 12 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 13 C 0.52 7.71 7.13 -10.98 -0.08 7.63 16 14 O -0.54 -9.58 15.84 5.55 0.09 -9.49 16 15 N -0.71 -10.52 5.01 -60.29 -0.30 -10.82 16 16 C 0.10 1.72 5.26 -4.04 -0.02 1.70 16 17 C 0.06 1.25 1.49 -89.69 -0.13 1.12 16 18 O -0.53 -10.11 13.50 -35.23 -0.48 -10.59 16 19 C 0.15 3.66 6.84 -2.84 -0.02 3.64 16 20 N -0.60 -16.08 3.70 -177.62 -0.66 -16.74 16 21 C -0.22 -6.31 10.70 -15.06 -0.16 -6.47 16 22 H 0.08 2.26 7.83 -52.49 -0.41 1.85 16 23 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 24 N -0.92 -27.60 11.51 55.49 0.64 -26.96 16 25 Si 0.91 22.60 29.56 -169.99 -5.02 17.58 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 29 C 0.14 2.92 8.34 -2.97 -0.02 2.90 16 30 C -0.09 -0.90 3.92 -26.51 -0.10 -1.00 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 36 H 0.18 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.40 5.64 6.62 -40.82 -0.27 5.37 16 38 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.08 1.35 8.09 -51.93 -0.42 0.93 16 40 H 0.36 5.42 7.73 45.56 0.35 5.77 16 41 H 0.03 0.84 8.06 -51.93 -0.42 0.42 16 42 H 0.07 1.95 7.37 -51.93 -0.38 1.57 16 43 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 45 H 0.05 0.97 8.10 -51.93 -0.42 0.55 16 46 H 0.08 0.72 8.09 -51.93 -0.42 0.30 16 47 H 0.08 0.92 7.75 -51.93 -0.40 0.52 16 LS Contribution 381.26 15.07 5.75 5.75 Total: -1.00 -36.52 381.26 -9.48 -45.99 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -7.79 Total: 9.06 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: -2.31 Total: 4.47 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: 0.29 Total: -62.76 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.39 Total: -20.08 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.52 -9.48 -45.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733508951.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.018 kcal (2) G-P(sol) polarization free energy of solvation -36.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds