Wall clock time and date at job start Tue Mar 31 2020 19:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.43402 * 2 1 4 4 C 1.53384 * 109.43254 * 240.09813 * 2 1 3 5 5 C 1.50888 * 108.19139 * 189.41733 * 4 2 1 6 6 C 1.34571 * 128.32232 * 196.70833 * 5 4 2 7 7 N 1.35200 * 107.61456 * 179.84052 * 6 5 4 8 8 H 0.96999 * 126.00343 * 179.72780 * 7 6 5 9 9 N 1.40317 * 107.99313 * 359.97438 * 7 6 5 10 10 C 1.30128 * 108.12283 * 0.06366 * 9 7 6 11 11 C 1.50954 * 128.28959 * 179.80878 * 10 9 7 12 12 H 1.08997 * 109.71670 * 77.06477 * 11 10 9 13 13 C 1.50701 * 109.70950 * 316.42484 * 11 10 9 14 14 O 1.21286 * 119.99903 * 241.24625 * 13 11 10 15 15 N 1.34777 * 120.00529 * 61.24648 * 13 11 10 16 16 C 1.46494 * 120.00185 * 179.97438 * 15 13 11 17 17 C 1.53006 * 109.47069 * 180.02562 * 16 15 13 18 18 O 1.42897 * 112.94176 * 55.33477 * 17 16 15 19 19 C 1.53941 * 113.73936 * 283.74103 * 17 16 15 20 20 N 1.47809 * 86.03514 * 222.08346 * 19 17 16 21 21 C 1.36942 * 134.45366 * 204.64088 * 20 19 17 22 22 H 1.07996 * 119.99694 * 173.34924 * 21 20 19 23 23 C 1.38807 * 120.00294 * 353.35806 * 21 20 19 24 24 N 1.31618 * 119.99851 * 5.05275 * 23 21 20 25 25 Si 1.86801 * 120.00059 * 185.06235 * 23 21 20 26 26 H 1.48501 * 109.47268 * 94.98061 * 25 23 21 27 27 H 1.48500 * 109.46915 * 214.98406 * 25 23 21 28 28 H 1.48497 * 109.47098 * 334.98409 * 25 23 21 29 29 C 1.47580 * 91.05256 * 24.55465 * 20 19 17 30 30 C 1.53031 * 109.38980 * 119.87111 * 2 1 3 31 31 H 1.09000 * 109.47191 * 179.90137 * 1 2 3 32 32 H 1.09005 * 109.47288 * 299.90360 * 1 2 3 33 33 H 1.08997 * 109.46946 * 59.90030 * 1 2 3 34 34 H 1.08998 * 109.72138 * 69.73874 * 4 2 1 35 35 H 1.08997 * 109.71939 * 309.08995 * 4 2 1 36 36 H 1.07994 * 126.19791 * 359.82558 * 6 5 4 37 37 H 0.96998 * 119.99477 * 0.02562 * 15 13 11 38 38 H 1.09002 * 109.47487 * 300.00401 * 16 15 13 39 39 H 1.09002 * 109.47142 * 60.00702 * 16 15 13 40 40 H 0.96700 * 114.00238 * 309.66600 * 18 17 16 41 41 H 1.09000 * 113.77087 * 336.35195 * 19 17 16 42 42 H 1.09005 * 113.76788 * 107.74649 * 19 17 16 43 43 H 0.97010 * 119.99836 * 180.02562 * 24 23 21 44 44 H 1.08999 * 113.76797 * 221.15173 * 29 20 19 45 45 H 1.08992 * 113.77149 * 89.74824 * 29 20 19 46 46 H 1.09002 * 109.42275 * 311.86257 * 30 2 1 47 47 H 1.08999 * 109.42335 * 71.68705 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8926 1.0279 0.0000 4 6 2.0403 -0.7211 -1.2539 5 6 3.5306 -0.9113 -1.1142 6 6 4.4275 -1.2072 -2.0728 7 7 5.6442 -1.2768 -1.4873 8 1 6.4813 -1.4780 -1.9341 9 7 5.4823 -1.0125 -0.1188 10 6 4.2190 -0.7950 0.1048 11 6 3.5431 -0.4725 1.4155 12 1 3.7195 0.5718 1.6730 13 6 4.0884 -1.3638 2.5014 14 8 3.3491 -2.1237 3.0905 15 7 5.3976 -1.3166 2.8180 16 6 5.9275 -2.1827 3.8740 17 6 7.4287 -1.9330 4.0330 18 8 7.7421 -0.5608 4.2797 19 6 8.2844 -2.5749 2.9260 20 7 9.2129 -2.9606 4.0094 21 6 10.5506 -3.2473 4.0692 22 1 11.0268 -3.4046 5.0257 23 6 11.2946 -3.3355 2.9007 24 7 10.7386 -3.0464 1.7432 25 14 13.0847 -3.8647 2.9708 26 1 13.1791 -5.3257 2.7221 27 1 13.8575 -3.1350 1.9337 28 1 13.6405 -3.5540 4.3123 29 6 8.1205 -2.9105 5.0004 30 6 2.0380 -0.7189 1.2517 31 1 -0.3633 -1.0277 -0.0018 32 1 -0.3634 0.5124 0.8909 33 1 -0.3633 0.5154 -0.8891 34 1 1.8275 -0.1185 -2.1369 35 1 1.5525 -1.6916 -1.3441 36 1 4.2142 -1.3614 -3.1202 37 1 5.9888 -0.7086 2.3471 38 1 5.4213 -1.9615 4.8137 39 1 5.7587 -3.2260 3.6072 40 1 7.3328 0.0544 3.6560 41 1 7.8049 -3.4222 2.4357 42 1 8.7033 -1.8558 2.2219 43 1 11.2584 -3.1084 0.9265 44 1 8.4088 -2.4589 5.9496 45 1 7.5929 -3.8566 5.1209 46 1 1.5112 -0.3388 2.1270 47 1 1.8537 -1.7889 1.1552 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733508951.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:11 Heat of formation + Delta-G solvation = 8.715532 kcal Electronic energy + Delta-G solvation = -29557.766003 eV Core-core repulsion = 25549.408865 eV Total energy + Delta-G solvation = -4008.357138 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.55819 -41.09698 -40.12456 -37.86182 -36.48733 -35.30201 -34.08455 -33.68741 -31.80661 -30.82918 -30.16931 -27.86840 -26.91106 -26.78287 -25.27091 -23.73078 -22.65365 -21.59237 -21.37851 -20.95315 -19.84624 -18.96615 -18.60437 -18.25391 -17.36654 -17.21357 -16.81742 -16.43168 -16.00842 -15.74164 -15.56550 -15.35012 -15.16305 -14.88358 -14.63584 -14.59285 -14.24579 -13.99933 -13.88958 -13.68471 -13.34294 -13.15809 -12.98843 -12.91223 -12.87850 -12.59568 -12.42928 -12.23912 -12.07856 -11.81238 -11.60281 -11.48948 -11.45693 -11.33799 -10.98786 -10.87932 -10.75605 -10.34064 -10.12308 -9.30660 -8.96056 -7.94566 -5.27264 0.98984 1.42100 1.44445 1.45963 1.53365 1.78404 2.02627 2.17819 2.43682 3.01021 3.23147 3.32515 3.41788 3.57956 3.61916 3.82353 3.86341 4.00254 4.13172 4.30713 4.34280 4.39281 4.46085 4.64113 4.64942 4.70710 4.75273 4.77757 4.87411 4.92648 4.95130 5.02752 5.08261 5.15326 5.17136 5.26022 5.30983 5.32363 5.36369 5.46455 5.49990 5.64755 5.70779 5.87389 6.43063 6.49131 6.70908 6.76307 6.87344 7.15759 7.55631 8.50277 9.22539 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017192 B = 0.003034 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.272376 B = 9225.656141 C =10503.432549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.084 4.084 3 H 0.081 0.919 4 C -0.032 4.032 5 C -0.248 4.248 6 C 0.071 3.929 7 N -0.479 5.479 8 H 0.448 0.552 9 N -0.315 5.315 10 C 0.065 3.935 11 C -0.019 4.019 12 H 0.136 0.864 13 C 0.522 3.478 14 O -0.573 6.573 15 N -0.709 5.709 16 C 0.118 3.882 17 C 0.098 3.902 18 O -0.538 6.538 19 C 0.156 3.844 20 N -0.635 5.635 21 C -0.236 4.236 22 H 0.083 0.917 23 C -0.067 4.067 24 N -0.949 5.949 25 Si 0.980 3.020 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.268 1.268 29 C 0.130 3.870 30 C -0.086 4.086 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.069 0.931 36 H 0.216 0.784 37 H 0.408 0.592 38 H 0.085 0.915 39 H 0.065 0.935 40 H 0.381 0.619 41 H 0.017 0.983 42 H 0.042 0.958 43 H 0.248 0.752 44 H 0.061 0.939 45 H 0.070 0.930 46 H 0.082 0.918 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.708 9.219 -9.478 25.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.103 4.103 3 H 0.099 0.901 4 C -0.070 4.070 5 C -0.259 4.259 6 C -0.075 4.075 7 N -0.188 5.188 8 H 0.294 0.706 9 N -0.138 5.138 10 C -0.103 4.103 11 C -0.042 4.042 12 H 0.154 0.846 13 C 0.309 3.691 14 O -0.453 6.453 15 N -0.361 5.361 16 C -0.007 4.007 17 C 0.055 3.945 18 O -0.345 6.345 19 C 0.030 3.970 20 N -0.362 5.362 21 C -0.364 4.364 22 H 0.101 0.899 23 C -0.260 4.260 24 N -0.598 5.598 25 Si 0.808 3.192 26 H -0.214 1.214 27 H -0.219 1.219 28 H -0.192 1.192 29 C 0.005 3.995 30 C -0.125 4.125 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.233 0.767 37 H 0.244 0.756 38 H 0.103 0.897 39 H 0.083 0.917 40 H 0.230 0.770 41 H 0.035 0.965 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.079 0.921 45 H 0.087 0.913 46 H 0.100 0.900 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -20.385 8.293 -8.151 23.469 hybrid contribution 1.178 -0.318 -1.387 1.847 sum -19.207 7.975 -9.538 22.880 Atomic orbital electron populations 1.21793 0.93470 1.02137 1.02631 1.21151 0.96523 0.99634 0.92959 0.90095 1.20117 0.87524 1.00793 0.98560 1.20402 0.98644 1.15384 0.91479 1.22736 0.84224 0.99628 1.00921 1.46443 1.10012 1.56970 1.05383 0.70617 1.77005 1.18672 1.23203 0.94963 1.22036 0.91150 1.00907 0.96251 1.19994 0.96740 1.00843 0.86642 0.84613 1.20810 0.81632 0.83171 0.83508 1.90670 1.58560 1.41213 1.54840 1.45857 1.09468 1.42483 1.38267 1.21721 0.92387 0.95004 0.91625 1.23148 0.90421 0.83208 0.97711 1.86539 1.75712 1.14985 1.57232 1.22651 0.87650 0.94960 0.91710 1.46104 1.02994 1.81132 1.05949 1.19396 0.83418 1.40302 0.93318 0.89929 1.25668 1.02814 1.02582 0.94904 1.70030 1.37132 1.55046 0.97556 0.85038 0.79218 0.77493 0.77467 1.21371 1.21879 1.19227 1.22781 0.87449 0.95288 0.93966 1.21469 0.90015 1.01423 0.99587 0.92834 0.92170 0.91152 0.89001 0.91210 0.76723 0.75565 0.89732 0.91687 0.76974 0.96487 0.93935 0.94310 0.92088 0.91254 0.89954 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.15 71.98 0.66 -0.77 16 2 C -0.08 -1.09 2.66 -10.66 -0.03 -1.12 16 3 H 0.08 0.96 8.10 -2.39 -0.02 0.94 16 4 C -0.03 -0.42 5.57 30.04 0.17 -0.25 16 5 C -0.25 -4.68 5.89 -20.10 -0.12 -4.79 16 6 C 0.07 1.14 11.95 83.33 1.00 2.14 16 7 N -0.48 -10.30 7.37 -57.89 -0.43 -10.73 16 8 H 0.45 8.02 8.96 -213.18 -1.91 6.11 16 9 N -0.32 -8.77 11.56 -47.13 -0.55 -9.31 16 10 C 0.06 1.56 6.39 43.44 0.28 1.84 16 11 C -0.02 -0.42 2.90 -12.08 -0.04 -0.46 16 12 H 0.14 2.30 8.14 -2.39 -0.02 2.28 16 13 C 0.52 15.26 7.13 87.66 0.62 15.88 16 14 O -0.57 -20.29 15.84 -3.05 -0.05 -20.34 16 15 N -0.71 -20.81 5.01 -463.05 -2.32 -23.14 16 16 C 0.12 3.87 5.26 86.38 0.45 4.32 16 17 C 0.10 3.79 1.49 -10.13 -0.02 3.78 16 18 O -0.54 -20.28 13.50 -148.98 -2.01 -22.29 16 19 C 0.16 7.71 6.84 86.44 0.59 8.31 16 20 N -0.64 -34.39 3.70 -719.72 -2.66 -37.05 16 21 C -0.24 -13.89 10.70 84.03 0.90 -12.99 16 22 H 0.08 4.66 7.83 -2.91 -0.02 4.64 16 23 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 24 N -0.95 -58.45 11.51 21.65 0.25 -58.20 16 25 Si 0.98 47.00 29.56 68.60 2.03 49.02 16 26 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 27 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 28 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 29 C 0.13 5.59 8.34 86.49 0.72 6.31 16 30 C -0.09 -1.62 3.92 30.73 0.12 -1.50 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.06 0.57 8.14 -2.38 -0.02 0.56 16 33 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.07 0.93 8.13 -2.39 -0.02 0.91 16 36 H 0.22 1.47 8.06 -2.91 -0.02 1.45 16 37 H 0.41 11.42 6.62 -92.71 -0.61 10.80 16 38 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 39 H 0.06 2.31 8.09 -2.39 -0.02 2.29 16 40 H 0.38 11.10 7.73 -74.06 -0.57 10.53 16 41 H 0.02 0.90 8.06 -2.39 -0.02 0.88 16 42 H 0.04 2.35 7.37 -2.38 -0.02 2.33 16 43 H 0.25 14.75 8.31 -92.70 -0.77 13.98 16 44 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 45 H 0.07 2.71 8.10 -2.39 -0.02 2.69 16 46 H 0.08 1.44 8.09 -2.39 -0.02 1.42 16 47 H 0.06 1.31 7.75 -2.39 -0.02 1.29 16 Total: -1.00 -80.25 381.26 -2.04 -82.29 By element: Atomic # 1 Polarization: 34.60 SS G_CDS: -2.08 Total: 32.52 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: 5.78 Total: 17.23 kcal Atomic # 7 Polarization: -132.72 SS G_CDS: -5.71 Total: -138.43 kcal Atomic # 8 Polarization: -40.58 SS G_CDS: -2.06 Total: -42.64 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.02 kcal Total: -80.25 -2.04 -82.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733508951.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.005 kcal (2) G-P(sol) polarization free energy of solvation -80.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds