Wall clock time and date at job start Tue Mar 31 2020 19:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46894 * 2 1 4 4 C 1.50703 * 109.47210 * 119.99519 * 2 1 3 5 5 H 1.08002 * 119.99808 * 119.99985 * 4 2 1 6 6 C 1.37884 * 119.99999 * 300.00293 * 4 2 1 7 7 N 1.31513 * 119.99753 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 119.99889 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47214 * 89.99794 * 8 6 4 10 10 H 1.48497 * 109.47369 * 210.00079 * 8 6 4 11 11 H 1.48503 * 109.47312 * 330.00212 * 8 6 4 12 12 N 1.46500 * 109.47376 * 239.99784 * 2 1 3 13 13 C 1.34775 * 119.99972 * 84.99687 * 12 2 1 14 14 O 1.21599 * 119.99992 * 0.02562 * 13 12 2 15 15 C 1.47428 * 120.00019 * 180.02562 * 13 12 2 16 16 C 1.41295 * 126.41205 * 359.97438 * 15 13 12 17 17 N 1.30444 * 108.01985 * 180.02562 * 16 15 13 18 18 N 1.39940 * 108.89995 * 0.02562 * 17 16 15 19 19 C 1.46501 * 125.75320 * 180.02562 * 18 17 16 20 20 C 1.50698 * 109.46888 * 304.96645 * 19 18 17 21 21 O 1.21283 * 120.00467 * 0.02562 * 20 19 18 22 22 N 1.34777 * 119.99993 * 180.02562 * 20 19 18 23 23 C 1.46496 * 120.00108 * 180.02562 * 22 20 19 24 24 C 1.54268 * 110.03243 * 272.90466 * 23 22 20 25 25 C 1.54968 * 104.16150 * 217.13628 * 24 23 22 26 26 C 1.54894 * 102.77560 * 37.88733 * 25 24 23 27 27 C 1.53875 * 110.03326 * 155.68716 * 23 22 20 28 28 C 1.34257 * 108.48782 * 359.97438 * 18 17 16 29 29 H 1.09008 * 109.46973 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47030 * 300.00136 * 1 2 3 31 31 H 1.08995 * 109.46920 * 60.00539 * 1 2 3 32 32 H 0.97001 * 119.99517 * 180.02562 * 7 6 4 33 33 H 0.96996 * 119.99471 * 265.00317 * 12 2 1 34 34 H 1.08002 * 125.98990 * 359.75209 * 16 15 13 35 35 H 1.09000 * 109.47532 * 64.96798 * 19 18 17 36 36 H 1.09005 * 109.46809 * 184.97196 * 19 18 17 37 37 H 0.97001 * 120.00099 * 359.97438 * 22 20 19 38 38 H 1.09002 * 110.01934 * 34.29438 * 23 22 20 39 39 H 1.09003 * 110.48407 * 335.78602 * 24 23 22 40 40 H 1.09000 * 110.48415 * 98.42429 * 24 23 22 41 41 H 1.08997 * 110.72019 * 279.57045 * 25 24 23 42 42 H 1.09001 * 110.91837 * 156.29617 * 25 24 23 43 43 H 1.08997 * 110.48084 * 203.40646 * 26 25 24 44 44 H 1.09000 * 110.59460 * 80.82153 * 26 25 24 45 45 H 1.08998 * 110.03332 * 238.56696 * 27 23 22 46 46 H 1.08998 * 110.03268 * 359.95011 * 27 23 22 47 47 H 1.08002 * 126.28642 * 180.02562 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9435 0.8304 2.6034 8 14 2.3213 -1.1200 4.0081 9 1 3.6296 -0.5456 4.4124 10 1 1.3431 -0.9490 5.1121 11 1 2.4859 -2.5660 3.7122 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8582 1.1616 -2.4117 15 6 2.6380 -0.7135 -3.5609 16 6 3.0111 -2.0734 -3.6507 17 7 3.3899 -2.3078 -4.8767 18 7 3.2795 -1.1266 -5.6190 19 6 3.6086 -0.9736 -7.0383 20 6 5.0260 -1.4264 -7.2770 21 8 5.6953 -1.8369 -6.3526 22 7 5.5499 -1.3752 -8.5176 23 6 6.9276 -1.8158 -8.7498 24 6 7.9044 -0.6467 -8.5069 25 6 8.9968 -0.8341 -9.5900 26 6 8.1832 -1.3142 -10.8176 27 6 7.1050 -2.2404 -10.2181 28 6 2.8203 -0.1575 -4.8112 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 0.7095 1.1620 3.4844 33 1 2.2490 -1.6318 -1.1524 34 1 2.9907 -2.7916 -2.8444 35 1 2.9280 -1.5796 -7.6365 36 1 3.5088 0.0737 -7.3236 37 1 5.0146 -1.0472 -9.2571 38 1 7.1696 -2.6480 -8.0886 39 1 7.3963 0.3085 -8.6390 40 1 8.3393 -0.7139 -7.5097 41 1 9.7175 -1.5923 -9.2838 42 1 9.4985 0.1096 -9.8041 43 1 8.8220 -1.8677 -11.5057 44 1 7.7200 -0.4681 -11.3253 45 1 7.4338 -3.2783 -10.2696 46 1 6.1657 -2.1194 -10.7578 47 1 2.6285 0.8684 -5.0887 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269399728.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:42 Heat of formation + Delta-G solvation = -3.428626 kcal Electronic energy + Delta-G solvation = -27707.578881 eV Core-core repulsion = 23698.695133 eV Total energy + Delta-G solvation = -4008.883748 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.30501 -40.17641 -38.35374 -37.99148 -34.64184 -34.15476 -33.50822 -32.20525 -30.19772 -29.34306 -29.24096 -28.34907 -26.83256 -25.16550 -22.84035 -22.05640 -21.22151 -20.79732 -20.61435 -20.32865 -19.20390 -17.96551 -17.70274 -16.81259 -16.28595 -15.88403 -15.77242 -15.17906 -15.13413 -14.95553 -14.46436 -14.30172 -14.16117 -13.89722 -13.78184 -13.48374 -12.88495 -12.80705 -12.64435 -12.41396 -12.23555 -12.01500 -11.69164 -11.59075 -11.56199 -11.28023 -11.13990 -11.01485 -10.91548 -10.84420 -10.62255 -10.35040 -10.21687 -10.14763 -9.51580 -9.39344 -8.98044 -8.94856 -8.49528 -8.44943 -7.73792 -6.04517 -4.12865 1.69229 2.16190 2.20916 2.53966 2.79077 3.30832 3.37096 3.39525 3.97315 4.07759 4.15072 4.22091 4.28414 4.35226 4.38570 4.55159 4.62993 4.85727 4.87723 4.95343 4.99955 5.02546 5.05384 5.13811 5.26679 5.27934 5.40307 5.55001 5.56001 5.62146 5.64062 5.73618 5.81257 6.09054 6.10976 6.58430 6.78605 6.93590 7.03657 7.07589 7.25485 7.58345 7.65800 7.70121 7.80492 7.81843 8.02570 8.24233 8.81176 8.89366 9.28574 9.54957 11.01570 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023504 B = 0.001885 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.985173 B =14849.674579 C =15357.145432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.265 3.735 3 H 0.049 0.951 4 C -0.531 4.531 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.703 5.703 13 C 0.579 3.421 14 O -0.566 6.566 15 C -0.270 4.270 16 C 0.078 3.922 17 N -0.276 5.276 18 N -0.362 5.362 19 C 0.117 3.883 20 C 0.498 3.502 21 O -0.500 6.500 22 N -0.727 5.727 23 C 0.142 3.858 24 C -0.136 4.136 25 C -0.125 4.125 26 C -0.124 4.124 27 C -0.131 4.131 28 C 0.114 3.886 29 H 0.026 0.974 30 H 0.089 0.911 31 H 0.015 0.985 32 H 0.263 0.737 33 H 0.387 0.613 34 H 0.190 0.810 35 H 0.116 0.884 36 H 0.126 0.874 37 H 0.400 0.600 38 H 0.092 0.908 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.075 0.925 46 H 0.071 0.929 47 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.103 -4.785 -30.013 32.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.067 0.933 4 C -0.569 4.569 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.350 5.350 13 C 0.365 3.635 14 O -0.447 6.447 15 C -0.285 4.285 16 C -0.110 4.110 17 N -0.094 5.094 18 N -0.142 5.142 19 C -0.009 4.009 20 C 0.282 3.718 21 O -0.372 6.372 22 N -0.381 5.381 23 C 0.037 3.963 24 C -0.174 4.174 25 C -0.163 4.163 26 C -0.162 4.162 27 C -0.169 4.169 28 C -0.035 4.035 29 H 0.045 0.955 30 H 0.108 0.892 31 H 0.034 0.966 32 H 0.073 0.927 33 H 0.220 0.780 34 H 0.207 0.793 35 H 0.134 0.866 36 H 0.144 0.856 37 H 0.234 0.766 38 H 0.110 0.890 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.094 0.906 46 H 0.090 0.910 47 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 10.755 -5.006 -30.113 32.365 hybrid contribution -0.146 -0.107 1.036 1.052 sum 10.609 -5.113 -29.077 31.371 Atomic orbital electron populations 1.22072 0.98488 0.99099 1.00834 1.18736 0.90998 0.94019 0.79928 0.93322 1.21242 1.32188 1.13163 0.90332 0.92038 1.24887 0.94868 0.95006 0.99019 1.69910 1.36013 1.22528 1.23745 0.86452 0.78542 0.79886 0.82228 1.20623 1.21159 1.19846 1.46308 1.65029 1.13440 1.10226 1.17237 0.77835 0.86075 0.82355 1.90707 1.52841 1.15761 1.85394 1.20631 1.17303 0.94979 0.95585 1.24142 0.96273 0.95689 0.94945 1.77214 1.22923 1.04436 1.04877 1.47756 1.50454 1.07784 1.08200 1.21459 0.95130 1.04850 0.79491 1.20615 0.88817 0.79099 0.83292 1.90833 1.61033 1.43403 1.41967 1.46108 1.14956 1.67488 1.09571 1.21663 0.80481 0.97386 0.96761 1.22814 0.96456 0.98438 0.99740 1.22497 0.97444 1.01517 0.94845 1.22359 0.97133 0.99080 0.97623 1.22439 0.99806 1.00424 0.94224 1.22868 0.95789 0.94946 0.89883 0.95484 0.89228 0.96612 0.92676 0.78013 0.79320 0.86637 0.85568 0.76583 0.89005 0.91110 0.90943 0.91191 0.91226 0.91333 0.91424 0.90612 0.90997 0.79740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.74 9.26 37.16 0.34 -3.40 16 2 C 0.26 6.98 2.56 -69.08 -0.18 6.80 16 3 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 4 C -0.53 -14.44 8.73 -34.44 -0.30 -14.74 16 5 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -25.36 11.32 55.43 0.63 -24.73 16 8 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 12 N -0.70 -15.53 5.06 -56.01 -0.28 -15.81 16 13 C 0.58 12.50 7.78 -12.52 -0.10 12.40 16 14 O -0.57 -14.14 16.56 5.28 0.09 -14.06 16 15 C -0.27 -4.69 6.13 -105.07 -0.64 -5.34 16 16 C 0.08 1.23 11.50 -16.98 -0.20 1.04 16 17 N -0.28 -4.34 11.55 30.86 0.36 -3.98 16 18 N -0.36 -4.69 3.37 -61.99 -0.21 -4.90 16 19 C 0.12 0.88 6.97 -5.19 -0.04 0.85 16 20 C 0.50 4.83 7.85 -10.99 -0.09 4.74 16 21 O -0.50 -7.62 15.36 5.55 0.09 -7.54 16 22 N -0.73 -4.33 5.04 -52.72 -0.27 -4.60 16 23 C 0.14 0.94 3.23 -66.81 -0.22 0.72 16 24 C -0.14 -0.92 6.54 -25.03 -0.16 -1.09 16 25 C -0.13 -0.63 6.91 -24.69 -0.17 -0.80 16 26 C -0.12 -0.48 6.83 -25.07 -0.17 -0.65 16 27 C -0.13 -0.55 6.57 -25.61 -0.17 -0.72 16 28 C 0.11 1.62 11.25 -16.56 -0.19 1.44 16 29 H 0.03 0.64 8.14 -51.92 -0.42 0.22 16 30 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 31 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 33 H 0.39 7.45 7.49 -40.82 -0.31 7.14 16 34 H 0.19 2.50 7.50 -52.49 -0.39 2.10 16 35 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.13 0.47 8.06 -51.93 -0.42 0.05 16 37 H 0.40 0.98 8.31 -40.82 -0.34 0.64 16 38 H 0.09 0.84 7.59 -51.93 -0.39 0.45 16 39 H 0.07 0.47 8.05 -51.93 -0.42 0.05 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 44 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.07 0.21 7.61 -51.93 -0.40 -0.18 16 47 H 0.19 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 392.17 15.07 5.91 5.91 Total: -1.00 -37.63 392.17 -8.22 -45.84 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -7.14 Total: 4.81 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: -2.36 Total: 2.95 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: 0.23 Total: -54.02 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: 0.17 Total: -21.60 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -37.63 -8.22 -45.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269399728.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.416 kcal (2) G-P(sol) polarization free energy of solvation -37.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds