Wall clock time and date at job start Tue Mar 31 2020 19:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46894 * 2 1 4 4 C 1.50703 * 109.47210 * 119.99519 * 2 1 3 5 5 H 1.08002 * 119.99808 * 119.99985 * 4 2 1 6 6 C 1.37884 * 119.99999 * 300.00293 * 4 2 1 7 7 N 1.31513 * 119.99753 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 119.99889 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47214 * 89.99794 * 8 6 4 10 10 H 1.48497 * 109.47369 * 210.00079 * 8 6 4 11 11 H 1.48503 * 109.47312 * 330.00212 * 8 6 4 12 12 N 1.46500 * 109.47376 * 239.99784 * 2 1 3 13 13 C 1.34775 * 119.99972 * 84.99687 * 12 2 1 14 14 O 1.21599 * 119.99992 * 0.02562 * 13 12 2 15 15 C 1.47428 * 120.00019 * 180.02562 * 13 12 2 16 16 C 1.41295 * 126.41205 * 359.97438 * 15 13 12 17 17 N 1.30444 * 108.01985 * 180.02562 * 16 15 13 18 18 N 1.39940 * 108.89995 * 0.02562 * 17 16 15 19 19 C 1.46501 * 125.75320 * 180.02562 * 18 17 16 20 20 C 1.50698 * 109.46888 * 304.96645 * 19 18 17 21 21 O 1.21283 * 120.00467 * 0.02562 * 20 19 18 22 22 N 1.34777 * 119.99993 * 180.02562 * 20 19 18 23 23 C 1.46496 * 120.00108 * 180.02562 * 22 20 19 24 24 C 1.54268 * 110.03243 * 272.90466 * 23 22 20 25 25 C 1.54968 * 104.16150 * 217.13628 * 24 23 22 26 26 C 1.54894 * 102.77560 * 37.88733 * 25 24 23 27 27 C 1.53875 * 110.03326 * 155.68716 * 23 22 20 28 28 C 1.34257 * 108.48782 * 359.97438 * 18 17 16 29 29 H 1.09008 * 109.46973 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47030 * 300.00136 * 1 2 3 31 31 H 1.08995 * 109.46920 * 60.00539 * 1 2 3 32 32 H 0.97001 * 119.99517 * 180.02562 * 7 6 4 33 33 H 0.96996 * 119.99471 * 265.00317 * 12 2 1 34 34 H 1.08002 * 125.98990 * 359.75209 * 16 15 13 35 35 H 1.09000 * 109.47532 * 64.96798 * 19 18 17 36 36 H 1.09005 * 109.46809 * 184.97196 * 19 18 17 37 37 H 0.97001 * 120.00099 * 359.97438 * 22 20 19 38 38 H 1.09002 * 110.01934 * 34.29438 * 23 22 20 39 39 H 1.09003 * 110.48407 * 335.78602 * 24 23 22 40 40 H 1.09000 * 110.48415 * 98.42429 * 24 23 22 41 41 H 1.08997 * 110.72019 * 279.57045 * 25 24 23 42 42 H 1.09001 * 110.91837 * 156.29617 * 25 24 23 43 43 H 1.08997 * 110.48084 * 203.40646 * 26 25 24 44 44 H 1.09000 * 110.59460 * 80.82153 * 26 25 24 45 45 H 1.08998 * 110.03332 * 238.56696 * 27 23 22 46 46 H 1.08998 * 110.03268 * 359.95011 * 27 23 22 47 47 H 1.08002 * 126.28642 * 180.02562 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9435 0.8304 2.6034 8 14 2.3213 -1.1200 4.0081 9 1 3.6296 -0.5456 4.4124 10 1 1.3431 -0.9490 5.1121 11 1 2.4859 -2.5660 3.7122 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8582 1.1616 -2.4117 15 6 2.6380 -0.7135 -3.5609 16 6 3.0111 -2.0734 -3.6507 17 7 3.3899 -2.3078 -4.8767 18 7 3.2795 -1.1266 -5.6190 19 6 3.6086 -0.9736 -7.0383 20 6 5.0260 -1.4264 -7.2770 21 8 5.6953 -1.8369 -6.3526 22 7 5.5499 -1.3752 -8.5176 23 6 6.9276 -1.8158 -8.7498 24 6 7.9044 -0.6467 -8.5069 25 6 8.9968 -0.8341 -9.5900 26 6 8.1832 -1.3142 -10.8176 27 6 7.1050 -2.2404 -10.2181 28 6 2.8203 -0.1575 -4.8112 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 0.7095 1.1620 3.4844 33 1 2.2490 -1.6318 -1.1524 34 1 2.9907 -2.7916 -2.8444 35 1 2.9280 -1.5796 -7.6365 36 1 3.5088 0.0737 -7.3236 37 1 5.0146 -1.0472 -9.2571 38 1 7.1696 -2.6480 -8.0886 39 1 7.3963 0.3085 -8.6390 40 1 8.3393 -0.7139 -7.5097 41 1 9.7175 -1.5923 -9.2838 42 1 9.4985 0.1096 -9.8041 43 1 8.8220 -1.8677 -11.5057 44 1 7.7200 -0.4681 -11.3253 45 1 7.4338 -3.2783 -10.2696 46 1 6.1657 -2.1194 -10.7578 47 1 2.6285 0.8684 -5.0887 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269399728.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:41 Heat of formation + Delta-G solvation = -31.216656 kcal Electronic energy + Delta-G solvation = -27708.783861 eV Core-core repulsion = 23698.695133 eV Total energy + Delta-G solvation = -4010.088728 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.41234 -40.94043 -39.99295 -38.66527 -36.62321 -34.87893 -34.54184 -34.06358 -31.59613 -30.71865 -29.67976 -29.45134 -27.61350 -27.29200 -24.36070 -22.99085 -22.23619 -21.65519 -21.40649 -21.28220 -20.82822 -19.37717 -18.42608 -18.10638 -17.30623 -17.06187 -16.81581 -16.51378 -16.27230 -16.01799 -15.84634 -15.55377 -15.33898 -14.82774 -14.69655 -14.46299 -14.33224 -14.26048 -13.77060 -13.66850 -13.41814 -13.01896 -12.94720 -12.84732 -12.71673 -12.53001 -12.22634 -12.14307 -12.04019 -11.99224 -11.98749 -11.79613 -11.50529 -11.22382 -11.07026 -10.73679 -10.54602 -10.46454 -10.12227 -9.88155 -9.48596 -8.14524 -6.31237 0.54441 1.20000 1.30837 1.46473 1.47139 1.49738 1.57951 2.12326 2.39359 2.63807 2.76655 3.15789 3.47559 3.56979 3.68007 3.70326 3.84257 3.97698 4.06819 4.13987 4.22213 4.43295 4.47839 4.50818 4.52858 4.61183 4.74145 4.74977 4.86003 4.87658 4.99005 5.01880 5.12008 5.14420 5.20997 5.25934 5.39250 5.43425 5.49503 5.55275 5.66079 5.75316 5.79952 5.96577 6.14305 6.48502 6.53260 6.76220 7.06130 7.19547 7.35718 7.62349 8.91953 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023504 B = 0.001885 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.985173 B =14849.674579 C =15357.145432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.271 3.729 3 H 0.000 1.000 4 C -0.546 4.546 5 H 0.071 0.929 6 C 0.014 3.986 7 N -0.916 5.916 8 Si 0.972 3.028 9 H -0.279 1.279 10 H -0.282 1.282 11 H -0.261 1.261 12 N -0.702 5.702 13 C 0.580 3.420 14 O -0.608 6.608 15 C -0.307 4.307 16 C 0.078 3.922 17 N -0.297 5.297 18 N -0.350 5.350 19 C 0.106 3.894 20 C 0.495 3.505 21 O -0.566 6.566 22 N -0.705 5.705 23 C 0.139 3.861 24 C -0.136 4.136 25 C -0.125 4.125 26 C -0.119 4.119 27 C -0.123 4.123 28 C 0.135 3.865 29 H 0.040 0.960 30 H 0.067 0.933 31 H 0.013 0.987 32 H 0.265 0.735 33 H 0.402 0.598 34 H 0.204 0.796 35 H 0.152 0.848 36 H 0.174 0.826 37 H 0.421 0.579 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.042 0.958 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.075 0.925 46 H 0.093 0.907 47 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.286 -5.652 -32.741 34.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.167 3.833 3 H 0.018 0.982 4 C -0.584 4.584 5 H 0.090 0.910 6 C -0.186 4.186 7 N -0.555 5.555 8 Si 0.797 3.203 9 H -0.205 1.205 10 H -0.208 1.208 11 H -0.185 1.185 12 N -0.349 5.349 13 C 0.368 3.632 14 O -0.492 6.492 15 C -0.322 4.322 16 C -0.110 4.110 17 N -0.116 5.116 18 N -0.129 5.129 19 C -0.017 4.017 20 C 0.281 3.719 21 O -0.443 6.443 22 N -0.359 5.359 23 C 0.034 3.966 24 C -0.174 4.174 25 C -0.162 4.162 26 C -0.156 4.156 27 C -0.161 4.161 28 C -0.016 4.016 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.032 0.968 32 H 0.074 0.926 33 H 0.237 0.763 34 H 0.221 0.779 35 H 0.170 0.830 36 H 0.192 0.808 37 H 0.260 0.740 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.061 0.939 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.098 0.902 45 H 0.094 0.906 46 H 0.111 0.889 47 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 10.946 -5.913 -32.948 35.219 hybrid contribution -0.143 0.213 1.706 1.726 sum 10.804 -5.700 -31.242 33.545 Atomic orbital electron populations 1.21884 0.98098 0.99470 0.99624 1.18366 0.91276 0.91930 0.81703 0.98246 1.21547 1.32477 1.13536 0.90853 0.91040 1.25791 0.94910 0.95657 1.02239 1.70054 1.36977 1.23888 1.24549 0.85340 0.77726 0.79155 0.78070 1.20506 1.20765 1.18503 1.46055 1.65321 1.14040 1.09503 1.17749 0.76684 0.85615 0.83103 1.90669 1.54772 1.17662 1.86144 1.20297 1.20788 0.95967 0.95136 1.24353 0.95785 0.95334 0.95577 1.77177 1.23274 1.06104 1.05018 1.48098 1.48520 1.06501 1.09809 1.22094 0.94193 1.08585 0.76808 1.21023 0.89353 0.78149 0.83419 1.90823 1.62748 1.46648 1.44073 1.45944 1.14819 1.65955 1.09213 1.21639 0.80681 0.96329 0.97957 1.22772 0.97162 0.98685 0.98827 1.22500 0.97033 1.01809 0.94905 1.22353 0.96856 0.99435 0.96971 1.22405 1.01044 1.00448 0.92239 1.23243 0.93476 0.95956 0.88958 0.94132 0.91394 0.96753 0.92553 0.76327 0.77945 0.83048 0.80825 0.74023 0.92203 0.90642 0.93922 0.91723 0.90614 0.90419 0.90204 0.90639 0.88899 0.76966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.93 9.26 71.98 0.67 -6.26 16 2 C 0.27 14.72 2.56 44.25 0.11 14.83 16 3 H 0.00 -0.02 7.58 -2.38 -0.02 -0.04 16 4 C -0.55 -30.03 8.73 25.60 0.22 -29.80 16 5 H 0.07 3.70 7.74 -2.91 -0.02 3.67 16 6 C 0.01 0.77 5.30 84.66 0.45 1.22 16 7 N -0.92 -53.67 11.32 21.45 0.24 -53.43 16 8 Si 0.97 43.31 29.54 68.60 2.03 45.34 16 9 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 10 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 12 N -0.70 -31.64 5.06 -449.37 -2.27 -33.91 16 13 C 0.58 25.52 7.78 86.66 0.67 26.20 16 14 O -0.61 -31.33 16.56 -4.03 -0.07 -31.39 16 15 C -0.31 -10.55 6.13 -20.15 -0.12 -10.67 16 16 C 0.08 2.41 11.50 85.65 0.99 3.40 16 17 N -0.30 -9.01 11.55 -56.27 -0.65 -9.66 16 18 N -0.35 -8.27 3.37 -350.03 -1.18 -9.45 16 19 C 0.11 1.21 6.97 85.63 0.60 1.81 16 20 C 0.50 8.71 7.85 87.66 0.69 9.39 16 21 O -0.57 -17.33 15.36 -3.04 -0.05 -17.38 16 22 N -0.70 -6.74 5.04 -439.10 -2.21 -8.96 16 23 C 0.14 1.72 3.23 45.72 0.15 1.87 16 24 C -0.14 -1.81 6.54 31.70 0.21 -1.60 16 25 C -0.12 -1.13 6.91 31.91 0.22 -0.91 16 26 C -0.12 -0.61 6.83 31.67 0.22 -0.39 16 27 C -0.12 -0.74 6.57 31.32 0.21 -0.53 16 28 C 0.13 3.60 11.25 84.27 0.95 4.54 16 29 H 0.04 1.95 8.14 -2.38 -0.02 1.93 16 30 H 0.07 3.86 6.07 -2.39 -0.01 3.85 16 31 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 33 H 0.40 15.56 7.49 -92.71 -0.69 14.87 16 34 H 0.20 5.30 7.50 -2.91 -0.02 5.28 16 35 H 0.15 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.17 0.35 8.06 -2.38 -0.02 0.33 16 37 H 0.42 0.38 8.31 -92.71 -0.77 -0.39 16 38 H 0.06 1.15 7.59 -2.39 -0.02 1.14 16 39 H 0.07 0.91 8.05 -2.39 -0.02 0.89 16 40 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 44 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 45 H 0.07 0.49 8.14 -2.39 -0.02 0.48 16 46 H 0.09 0.19 7.61 -2.39 -0.02 0.17 16 47 H 0.21 4.34 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -86.56 392.17 1.59 -84.97 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: -0.46 Total: 20.77 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: 6.22 Total: 13.09 kcal Atomic # 7 Polarization: -109.33 SS G_CDS: -6.08 Total: -115.40 kcal Atomic # 8 Polarization: -48.66 SS G_CDS: -0.11 Total: -48.77 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -86.56 1.59 -84.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269399728.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.751 kcal (2) G-P(sol) polarization free energy of solvation -86.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds