Wall clock time and date at job start Tue Mar 31 2020 19:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.46936 * 2 1 4 4 N 1.46502 * 109.47582 * 240.00058 * 2 1 3 5 5 C 1.34777 * 119.99660 * 85.26962 * 4 2 1 6 6 O 1.21576 * 120.00408 * 359.73071 * 5 4 2 7 7 N 1.34774 * 119.99617 * 179.72809 * 5 4 2 8 8 C 1.39466 * 119.99967 * 175.16805 * 7 5 4 9 9 C 1.38644 * 119.64753 * 185.27290 * 8 7 5 10 10 C 1.40822 * 118.67305 * 179.76606 * 9 8 7 11 11 C 1.41541 * 120.99850 * 180.23697 * 10 9 8 12 12 H 1.07992 * 119.99773 * 329.75524 * 11 10 9 13 13 C 1.40033 * 120.00039 * 149.75703 * 11 10 9 14 14 N 1.30744 * 120.00222 * 167.64124 * 13 11 10 15 15 Si 1.86803 * 120.00002 * 347.63332 * 13 11 10 16 16 H 1.48503 * 109.46959 * 92.46210 * 15 13 11 17 17 H 1.48493 * 109.47553 * 212.46391 * 15 13 11 18 18 H 1.48500 * 109.47246 * 332.47025 * 15 13 11 19 19 C 1.41166 * 118.00323 * 0.49571 * 10 9 8 20 20 C 1.36592 * 119.13024 * 359.74097 * 19 10 9 21 21 N 1.32071 * 121.25411 * 0.02562 * 20 19 10 22 22 C 1.53001 * 109.47265 * 119.99751 * 2 1 3 23 23 H 1.09001 * 109.50703 * 300.09134 * 22 2 1 24 24 C 1.53102 * 109.50496 * 180.02562 * 22 2 1 25 25 N 1.47015 * 109.25605 * 183.21747 * 24 22 2 26 26 C 1.46897 * 111.00224 * 182.39391 * 25 24 22 27 27 C 1.47012 * 110.75171 * 58.61590 * 25 24 22 28 28 C 1.53096 * 109.26021 * 301.38222 * 27 25 24 29 29 O 1.43016 * 109.50480 * 60.21859 * 22 2 1 30 30 H 1.09005 * 109.46936 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47590 * 299.99762 * 1 2 3 32 32 H 1.08998 * 109.47637 * 60.00280 * 1 2 3 33 33 H 0.96995 * 119.99975 * 265.00485 * 4 2 1 34 34 H 0.97001 * 120.00137 * 355.17045 * 7 5 4 35 35 H 1.08000 * 120.66336 * 0.02562 * 9 8 7 36 36 H 0.96992 * 119.99754 * 180.02562 * 14 13 11 37 37 H 1.07996 * 120.43588 * 179.71718 * 19 10 9 38 38 H 1.08000 * 119.37548 * 179.97438 * 20 19 10 39 39 H 1.09001 * 109.50691 * 303.15058 * 24 22 2 40 40 H 1.08999 * 109.50568 * 63.28399 * 24 22 2 41 41 H 1.09005 * 109.47220 * 59.99612 * 26 25 24 42 42 H 1.08998 * 109.47412 * 179.97438 * 26 25 24 43 43 H 1.09000 * 109.46753 * 300.00231 * 26 25 24 44 44 H 1.08999 * 109.50470 * 61.32124 * 27 25 24 45 45 H 1.09004 * 109.50707 * 181.44601 * 27 25 24 46 46 H 1.09009 * 109.50702 * 176.78403 * 28 27 25 47 47 H 1.08995 * 109.50635 * 296.91245 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1523 -0.0168 -2.3557 6 8 1.8631 1.1628 -2.4104 7 7 2.6069 -0.6508 -3.4548 8 6 2.6504 0.0181 -4.6778 9 6 3.0147 -0.6715 -5.8240 10 6 3.0469 0.0229 -7.0488 11 6 3.4070 -0.6338 -8.2498 12 1 4.0979 -1.4635 -8.2253 13 6 2.8673 -0.2078 -9.4697 14 7 3.3717 -0.6422 -10.5950 15 14 1.4266 0.9811 -9.4892 16 1 1.9352 2.3739 -9.5717 17 1 0.5667 0.6977 -10.6663 18 1 0.6325 0.8172 -8.2451 19 6 2.7148 1.3949 -7.0417 20 6 2.3729 1.9902 -5.8609 21 7 2.3485 1.3070 -4.7309 22 6 2.0400 -0.7212 1.2493 23 1 1.6756 -0.2087 2.1396 24 6 3.5710 -0.7211 1.2503 25 7 4.0551 -1.4815 2.4117 26 6 5.5222 -1.4582 2.4819 27 6 3.5511 -2.8621 2.3772 28 6 2.0204 -2.8408 2.3648 29 8 1.5679 -2.0712 1.2475 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 2.2490 -1.6317 -1.1526 34 1 2.9037 -1.5724 -3.3952 35 1 3.2646 -1.7212 -5.7793 36 1 2.9980 -0.3468 -11.4399 37 1 2.7312 1.9664 -7.9579 38 1 2.1185 3.0398 -5.8509 39 1 3.9357 -1.1850 0.3339 40 1 3.9348 0.3047 1.3096 41 1 5.8654 -0.4274 2.5713 42 1 5.8535 -2.0276 3.3502 43 1 5.9363 -1.9017 1.5764 44 1 3.9155 -3.3602 1.4788 45 1 3.9006 -3.3992 3.2590 46 1 1.6428 -3.8600 2.2817 47 1 1.6552 -2.3909 3.2880 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871725618.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:30 Heat of formation + Delta-G solvation = -44.533002 kcal Electronic energy + Delta-G solvation = -28908.075852 eV Core-core repulsion = 24897.409684 eV Total energy + Delta-G solvation = -4010.666168 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.67538 -40.81833 -39.87789 -37.15032 -36.42430 -35.93235 -35.42650 -33.22052 -32.65498 -30.99070 -30.10846 -29.59439 -27.92155 -25.69099 -25.01085 -24.25676 -23.70994 -22.29330 -21.76854 -21.12003 -19.89039 -19.52456 -18.12095 -17.65140 -17.34466 -17.12564 -16.52884 -16.36174 -16.26340 -16.09940 -15.89156 -15.72463 -15.64047 -15.05793 -14.90853 -14.75439 -14.67768 -14.54451 -14.13033 -13.65533 -13.39805 -13.29092 -13.07293 -12.98691 -12.82135 -12.69767 -12.57307 -12.55551 -12.32573 -11.87578 -11.77054 -11.57704 -11.45648 -11.28702 -11.18682 -10.63966 -10.17505 -10.08483 -9.69337 -9.44667 -8.96739 -8.94281 -6.72716 0.60054 0.76678 1.28119 1.40934 1.48692 1.55343 2.09808 2.22799 2.66221 2.72589 2.78371 3.13078 3.53362 3.63443 3.81738 3.99176 4.01150 4.09524 4.20934 4.29598 4.37584 4.43414 4.45596 4.54681 4.60807 4.62699 4.63712 4.66597 4.75761 4.75935 4.79615 4.90138 4.95703 4.96778 5.01081 5.19643 5.26989 5.33846 5.43658 5.55136 5.70858 5.85571 5.87488 5.92833 6.11713 6.17084 6.28824 6.51509 6.69422 6.93789 7.54491 7.78190 8.10674 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022054 B = 0.002413 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.312156 B =11600.246186 C =12041.643547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.173 3.827 3 H 0.088 0.912 4 N -0.721 5.721 5 C 0.692 3.308 6 O -0.573 6.573 7 N -0.661 5.661 8 C 0.380 3.620 9 C -0.300 4.300 10 C 0.116 3.884 11 C -0.467 4.467 12 H 0.068 0.932 13 C 0.054 3.946 14 N -0.836 5.836 15 Si 0.967 3.033 16 H -0.253 1.253 17 H -0.277 1.277 18 H -0.260 1.260 19 C -0.312 4.312 20 C 0.135 3.865 21 N -0.570 5.570 22 C 0.101 3.899 23 H 0.093 0.907 24 C 0.025 3.975 25 N -0.548 5.548 26 C 0.023 3.977 27 C 0.014 3.986 28 C 0.062 3.938 29 O -0.388 6.388 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.035 0.965 33 H 0.407 0.593 34 H 0.422 0.578 35 H 0.126 0.874 36 H 0.298 0.702 37 H 0.113 0.887 38 H 0.155 0.845 39 H 0.036 0.964 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.084 0.916 43 H 0.022 0.978 44 H 0.037 0.963 45 H 0.102 0.898 46 H 0.117 0.883 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.494 -5.191 25.916 26.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.068 3.932 3 H 0.106 0.894 4 N -0.379 5.379 5 C 0.391 3.609 6 O -0.447 6.447 7 N -0.311 5.311 8 C 0.151 3.849 9 C -0.325 4.325 10 C 0.108 3.892 11 C -0.498 4.498 12 H 0.087 0.913 13 C -0.163 4.163 14 N -0.462 5.462 15 Si 0.791 3.209 16 H -0.178 1.178 17 H -0.204 1.204 18 H -0.185 1.185 19 C -0.335 4.335 20 C -0.018 4.018 21 N -0.289 5.289 22 C 0.042 3.958 23 H 0.111 0.889 24 C -0.104 4.104 25 N -0.273 5.273 26 C -0.125 4.125 27 C -0.114 4.114 28 C -0.014 4.014 29 O -0.307 6.307 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.054 0.946 33 H 0.243 0.757 34 H 0.260 0.740 35 H 0.144 0.856 36 H 0.109 0.891 37 H 0.131 0.869 38 H 0.172 0.828 39 H 0.055 0.945 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.103 0.897 43 H 0.041 0.959 44 H 0.055 0.945 45 H 0.121 0.879 46 H 0.135 0.865 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.262 -3.615 26.764 27.102 hybrid contribution 0.873 -1.297 -1.961 2.508 sum -1.388 -4.912 24.804 25.323 Atomic orbital electron populations 1.22034 0.94338 1.02691 1.02020 1.20887 0.94917 0.96019 0.81416 0.89406 1.45026 1.71098 1.13965 1.07788 1.16209 0.78779 0.85110 0.80761 1.90994 1.54995 1.15046 1.83664 1.42474 1.66513 1.16564 1.05504 1.18029 0.93354 0.89229 0.84247 1.21349 1.18979 1.00376 0.91833 1.17868 0.86925 0.91346 0.93094 1.19450 1.24777 1.15457 0.90112 0.91339 1.26767 0.99210 0.96166 0.94163 1.69615 1.37936 1.38902 0.99777 0.85485 0.78314 0.78872 0.78202 1.17800 1.20357 1.18466 1.21799 1.16460 0.95968 0.99280 1.21999 0.93379 0.99317 0.87087 1.67452 1.25212 1.07060 1.29202 1.22326 0.92096 0.84113 0.97250 0.88884 1.22744 0.95872 0.99770 0.91973 1.62261 1.10867 1.13603 1.40532 1.22426 0.85988 1.02918 1.01130 1.22903 0.96926 0.89226 1.02315 1.22836 0.92225 0.97097 0.89277 1.87981 1.72906 1.22476 1.47353 0.91466 0.89807 0.94582 0.75658 0.73971 0.85596 0.89132 0.86923 0.82766 0.94548 0.89792 0.91062 0.89743 0.95894 0.94491 0.87946 0.86505 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 9.34 71.98 0.67 -2.57 16 2 C 0.17 3.70 2.42 44.99 0.11 3.81 16 3 H 0.09 2.16 7.57 -2.38 -0.02 2.15 16 4 N -0.72 -17.51 4.31 -457.82 -1.97 -19.49 16 5 C 0.69 23.95 8.49 179.05 1.52 25.47 16 6 O -0.57 -25.08 14.26 -3.96 -0.06 -25.13 16 7 N -0.66 -22.90 5.40 -322.37 -1.74 -24.64 16 8 C 0.38 16.87 7.42 132.76 0.98 17.86 16 9 C -0.30 -13.77 9.74 23.00 0.22 -13.55 16 10 C 0.12 5.91 5.16 -21.11 -0.11 5.80 16 11 C -0.47 -25.34 9.67 23.52 0.23 -25.12 16 12 H 0.07 3.93 8.06 -2.91 -0.02 3.90 16 13 C 0.05 2.81 5.48 85.29 0.47 3.27 16 14 N -0.84 -44.11 13.92 21.84 0.30 -43.81 16 15 Si 0.97 42.31 24.42 68.60 1.68 43.98 16 16 H -0.25 -10.38 6.67 99.48 0.66 -9.71 16 17 H -0.28 -11.32 7.11 99.48 0.71 -10.61 16 18 H -0.26 -12.01 6.66 99.48 0.66 -11.35 16 19 C -0.31 -15.06 7.06 22.60 0.16 -14.90 16 20 C 0.14 6.26 11.10 84.27 0.94 7.19 16 21 N -0.57 -27.53 7.86 -194.26 -1.53 -29.05 16 22 C 0.10 1.64 2.55 30.63 0.08 1.72 16 23 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 24 C 0.02 0.42 4.84 86.32 0.42 0.83 16 25 N -0.55 -7.86 4.99 -921.43 -4.59 -12.46 16 26 C 0.02 0.29 9.60 127.69 1.23 1.52 16 27 C 0.01 0.16 5.66 86.31 0.49 0.65 16 28 C 0.06 0.68 7.01 72.01 0.50 1.19 16 29 O -0.39 -6.19 9.31 -148.98 -1.39 -7.58 16 30 H 0.07 1.39 7.69 -2.38 -0.02 1.37 16 31 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.41 8.09 8.01 -92.71 -0.74 7.35 16 34 H 0.42 11.06 8.71 -92.71 -0.81 10.25 16 35 H 0.13 5.20 8.06 -2.91 -0.02 5.18 16 36 H 0.30 14.06 8.29 -92.71 -0.77 13.30 16 37 H 0.11 5.25 4.43 -2.91 -0.01 5.24 16 38 H 0.16 6.12 8.06 -2.91 -0.02 6.10 16 39 H 0.04 0.69 7.36 -2.39 -0.02 0.67 16 40 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 42 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.02 0.31 8.14 -2.39 -0.02 0.29 16 44 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 46 H 0.12 0.87 8.14 -2.38 -0.02 0.85 16 47 H 0.07 0.66 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -69.35 376.24 -2.03 -71.38 By element: Atomic # 1 Polarization: 34.25 SS G_CDS: -0.64 Total: 33.61 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: 7.91 Total: 13.18 kcal Atomic # 7 Polarization: -119.92 SS G_CDS: -9.53 Total: -129.45 kcal Atomic # 8 Polarization: -31.27 SS G_CDS: -1.44 Total: -32.71 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 1.68 Total: 43.98 kcal Total: -69.35 -2.03 -71.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871725618.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.848 kcal (2) G-P(sol) polarization free energy of solvation -69.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds