Wall clock time and date at job start Tue Mar 31 2020 19:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47649 * 2 1 4 4 C 1.50706 * 109.47096 * 239.99793 * 2 1 3 5 5 H 1.08006 * 119.99601 * 245.76520 * 4 2 1 6 6 C 1.37872 * 119.99883 * 65.76064 * 4 2 1 7 7 N 1.31508 * 120.00016 * 197.65417 * 6 4 2 8 8 Si 1.86805 * 119.99836 * 17.93837 * 6 4 2 9 9 H 1.48501 * 109.46769 * 179.72093 * 8 6 4 10 10 H 1.48496 * 109.46928 * 299.71985 * 8 6 4 11 11 H 1.48497 * 109.47330 * 59.72222 * 8 6 4 12 12 N 1.46504 * 109.47214 * 120.00200 * 2 1 3 13 13 C 1.34780 * 119.99678 * 274.99675 * 12 2 1 14 14 O 1.21582 * 120.00054 * 0.02562 * 13 12 2 15 15 N 1.34770 * 120.00109 * 179.97438 * 13 12 2 16 16 C 1.39395 * 120.00158 * 185.18669 * 15 13 12 17 17 C 1.39054 * 119.69756 * 185.74630 * 16 15 13 18 18 C 1.38342 * 119.09894 * 179.73096 * 17 16 15 19 19 C 1.38852 * 118.49917 * 0.53257 * 18 17 16 20 20 C 1.38064 * 119.31016 * 359.72833 * 19 18 17 21 21 C 1.50693 * 119.57509 * 180.02562 * 20 19 18 22 22 N 1.46901 * 109.47503 * 94.97658 * 21 20 19 23 23 C 1.47018 * 111.00076 * 293.63840 * 22 21 20 24 24 C 1.53093 * 109.25697 * 177.60453 * 23 22 21 25 25 O 1.43016 * 109.26153 * 56.85077 * 24 23 22 26 26 C 1.43023 * 113.73328 * 301.32606 * 25 24 23 27 27 C 1.47007 * 111.00336 * 169.99934 * 22 21 20 28 28 N 1.31944 * 120.84778 * 0.02562 * 20 19 18 29 29 H 1.08997 * 109.47504 * 175.15218 * 1 2 3 30 30 H 1.09006 * 109.46645 * 295.15417 * 1 2 3 31 31 H 1.09000 * 109.46876 * 55.14809 * 1 2 3 32 32 H 0.97001 * 120.00252 * 355.24410 * 7 6 4 33 33 H 0.96998 * 120.00549 * 94.99830 * 12 2 1 34 34 H 0.97001 * 120.00036 * 5.18724 * 15 13 12 35 35 H 1.07996 * 120.44559 * 359.97438 * 17 16 15 36 36 H 1.08001 * 120.74857 * 180.23841 * 18 17 16 37 37 H 1.07995 * 120.34495 * 179.70695 * 19 18 17 38 38 H 1.08998 * 109.47271 * 214.97622 * 21 20 19 39 39 H 1.09002 * 109.47443 * 334.97595 * 21 20 19 40 40 H 1.09005 * 109.50462 * 297.53910 * 23 22 21 41 41 H 1.09000 * 109.50693 * 57.66603 * 23 22 21 42 42 H 1.08996 * 109.51009 * 296.90795 * 24 23 22 43 43 H 1.09003 * 109.53839 * 176.80610 * 24 23 22 44 44 H 1.08997 * 109.50505 * 298.73693 * 26 25 24 45 45 H 1.08996 * 109.53680 * 178.63149 * 26 25 24 46 46 H 1.09002 * 109.50583 * 302.32489 * 27 22 21 47 47 H 1.09001 * 109.50559 * 62.45915 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.5743 -1.6397 -1.1340 6 6 1.7999 -0.1743 -2.4792 7 7 1.9155 -0.9283 -3.5505 8 14 1.3287 1.6252 -2.6500 9 1 1.1418 1.9538 -4.0861 10 1 0.0628 1.8772 -1.9158 11 1 2.4068 2.4752 -2.0840 12 7 2.0184 -0.6907 1.1962 13 6 2.1471 -0.0183 2.3571 14 8 1.8576 1.1613 2.4118 15 7 2.5959 -0.6536 3.4577 16 6 2.6270 0.0113 4.6824 17 6 3.2012 -0.6071 5.7877 18 6 3.2304 0.0664 6.9957 19 6 2.6719 1.3360 7.0602 20 6 2.1134 1.8871 5.9242 21 6 1.5062 3.2648 5.9872 22 7 2.5003 4.2582 5.5596 23 6 3.6165 4.3311 6.5137 24 6 4.6550 5.3319 6.0002 25 8 4.0284 6.6021 5.8020 26 6 2.9373 6.5678 4.8779 27 6 1.8814 5.5795 5.3800 28 7 2.1044 1.2230 4.7841 29 1 -0.3634 -1.0239 -0.0868 30 1 -0.3633 0.4369 0.9303 31 1 -0.3633 0.5873 -0.8433 32 1 2.2308 -1.8420 -3.4688 33 1 2.2491 -1.6318 1.1527 34 1 2.8973 -1.5737 3.3976 35 1 3.6222 -1.5980 5.7030 36 1 3.6732 -0.3872 7.8702 37 1 2.6742 1.8865 7.9893 38 1 0.6398 3.3106 5.3274 39 1 1.1956 3.4787 7.0100 40 1 3.2445 4.6584 7.4846 41 1 4.0761 3.3477 6.6119 42 1 5.0661 4.9773 5.0551 43 1 5.4573 5.4320 6.7313 44 1 3.2984 6.2491 3.9001 45 1 2.4968 7.5615 4.7971 46 1 1.0745 5.5074 4.6506 47 1 1.4817 5.9267 6.3328 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889275323.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:08 Heat of formation + Delta-G solvation = -10.546319 kcal Electronic energy + Delta-G solvation = -29093.787400 eV Core-core repulsion = 25084.595005 eV Total energy + Delta-G solvation = -4009.192395 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.77270 -39.69519 -38.91251 -36.21637 -35.19850 -34.23205 -32.56063 -32.38777 -31.42635 -30.78292 -29.25870 -28.06971 -25.09924 -24.81415 -24.25583 -23.48550 -21.99569 -21.14677 -20.54981 -19.74638 -18.48335 -17.63356 -17.00751 -16.77629 -16.39505 -16.14772 -15.76648 -15.31384 -15.21280 -14.97246 -14.94128 -14.67313 -14.25325 -13.82846 -13.70171 -13.30846 -13.19384 -12.95419 -12.63598 -12.55167 -12.17623 -12.16686 -12.10644 -11.69353 -11.59728 -11.46535 -11.34753 -10.77216 -10.55222 -10.45365 -9.98719 -9.93140 -9.86543 -9.71413 -9.68541 -9.04931 -8.83841 -8.52489 -8.30028 -8.26876 -7.96666 -6.57282 -4.20023 1.06693 1.35167 2.87811 3.39614 3.41136 3.48246 3.63341 3.67141 3.81095 4.14685 4.18688 4.43975 4.59230 4.71582 4.77253 4.78655 4.90150 4.97051 4.98037 5.02655 5.09215 5.15938 5.19743 5.36380 5.37465 5.41536 5.48201 5.59383 5.65097 5.70067 5.79339 5.88067 6.09456 6.30722 6.43394 6.58641 6.71330 6.73697 6.76802 6.82421 6.94871 6.96436 7.13403 7.42043 7.48932 7.73960 8.19793 8.26179 8.68172 8.77805 9.22421 9.49111 10.83792 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011302 B = 0.003288 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.911641 B = 8512.600931 C =10319.416708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.260 3.740 3 H 0.041 0.959 4 C -0.617 4.617 5 H 0.061 0.939 6 C 0.040 3.960 7 N -0.898 5.898 8 Si 1.042 2.958 9 H -0.284 1.284 10 H -0.270 1.270 11 H -0.280 1.280 12 N -0.716 5.716 13 C 0.682 3.318 14 O -0.534 6.534 15 N -0.676 5.676 16 C 0.394 3.606 17 C -0.220 4.220 18 C -0.046 4.046 19 C -0.216 4.216 20 C 0.170 3.830 21 C 0.109 3.891 22 N -0.524 5.524 23 C 0.016 3.984 24 C 0.064 3.936 25 O -0.388 6.388 26 C 0.063 3.937 27 C 0.021 3.979 28 N -0.452 5.452 29 H 0.044 0.956 30 H 0.030 0.970 31 H 0.061 0.939 32 H 0.268 0.732 33 H 0.388 0.612 34 H 0.409 0.591 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.127 0.873 38 H 0.097 0.903 39 H 0.050 0.950 40 H 0.041 0.959 41 H 0.087 0.913 42 H 0.061 0.939 43 H 0.096 0.904 44 H 0.063 0.937 45 H 0.098 0.902 46 H 0.091 0.909 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.593 5.873 24.653 25.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.157 3.843 3 H 0.059 0.941 4 C -0.655 4.655 5 H 0.079 0.921 6 C -0.167 4.167 7 N -0.531 5.531 8 Si 0.869 3.131 9 H -0.209 1.209 10 H -0.196 1.196 11 H -0.206 1.206 12 N -0.369 5.369 13 C 0.381 3.619 14 O -0.405 6.405 15 N -0.324 5.324 16 C 0.161 3.839 17 C -0.244 4.244 18 C -0.072 4.072 19 C -0.239 4.239 20 C 0.029 3.971 21 C -0.019 4.019 22 N -0.249 5.249 23 C -0.112 4.112 24 C -0.013 4.013 25 O -0.307 6.307 26 C -0.014 4.014 27 C -0.107 4.107 28 N -0.166 5.166 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.220 0.780 34 H 0.245 0.755 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.145 0.855 38 H 0.115 0.885 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.105 0.895 42 H 0.079 0.921 43 H 0.114 0.886 44 H 0.082 0.918 45 H 0.116 0.884 46 H 0.109 0.891 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.699 8.512 22.268 23.900 hybrid contribution 0.766 -2.868 2.422 3.831 sum 2.465 5.644 24.690 25.447 Atomic orbital electron populations 1.22525 0.99024 1.00718 0.99806 1.18894 0.90330 0.93898 0.81199 0.94109 1.22083 1.41882 1.10437 0.91123 0.92105 1.25671 0.94156 1.05185 0.91666 1.70885 1.41250 1.09667 1.31337 0.84092 0.77742 0.75111 0.76108 1.20947 1.19624 1.20556 1.45607 1.69174 1.13337 1.08800 1.16280 0.79557 0.85830 0.80253 1.91009 1.53424 1.13021 1.83051 1.43017 1.66914 1.16384 1.06064 1.18223 0.91501 0.89231 0.84942 1.21413 1.07199 1.02609 0.93215 1.21207 0.95395 0.93683 0.96900 1.21764 1.04904 0.97492 0.99712 1.20811 0.93625 0.94966 0.87660 1.20912 0.94630 0.86844 0.99511 1.62026 1.09711 1.06161 1.47001 1.22863 0.93604 1.00966 0.93805 1.22649 0.94302 0.83127 1.01252 1.87954 1.47871 1.30410 1.64437 1.22684 0.86756 0.99141 0.92829 1.22781 0.97990 0.88849 1.01032 1.67488 1.17514 1.05969 1.25665 0.93654 0.95108 0.92060 0.92164 0.77984 0.75522 0.84909 0.84797 0.85494 0.88493 0.93153 0.94059 0.89500 0.92113 0.88587 0.91836 0.88371 0.89107 0.94050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.76 9.16 37.16 0.34 -3.42 16 2 C 0.26 6.39 2.14 -69.08 -0.15 6.24 16 3 H 0.04 1.10 6.22 -51.93 -0.32 0.77 16 4 C -0.62 -16.84 9.00 -34.44 -0.31 -17.15 16 5 H 0.06 1.72 7.96 -52.48 -0.42 1.30 16 6 C 0.04 1.13 5.34 -17.82 -0.10 1.03 16 7 N -0.90 -26.86 13.70 55.43 0.76 -26.10 16 8 Si 1.04 25.47 26.44 -169.99 -4.49 20.97 16 9 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.27 -6.19 5.52 56.52 0.31 -5.88 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 N -0.72 -14.80 5.07 -59.81 -0.30 -15.11 16 13 C 0.68 13.87 8.48 -86.92 -0.74 13.13 16 14 O -0.53 -12.96 14.31 5.29 0.08 -12.88 16 15 N -0.68 -10.42 5.39 -15.81 -0.09 -10.51 16 16 C 0.39 6.00 7.41 -154.71 -1.15 4.86 16 17 C -0.22 -2.42 9.94 -39.24 -0.39 -2.81 16 18 C -0.05 -0.43 10.17 -39.32 -0.40 -0.83 16 19 C -0.22 -2.24 8.29 -39.42 -0.33 -2.57 16 20 C 0.17 2.31 5.65 -82.61 -0.47 1.84 16 21 C 0.11 1.31 5.28 -4.98 -0.03 1.29 16 22 N -0.52 -6.51 4.72 -235.76 -1.11 -7.62 16 23 C 0.02 0.16 5.33 -3.71 -0.02 0.15 16 24 C 0.06 0.66 7.01 37.21 0.26 0.92 16 25 O -0.39 -4.56 10.83 -35.23 -0.38 -4.94 16 26 C 0.06 0.66 7.01 37.21 0.26 0.92 16 27 C 0.02 0.23 5.64 -3.71 -0.02 0.21 16 28 N -0.45 -7.79 7.84 -8.60 -0.07 -7.86 16 29 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 1.44 4.84 -51.93 -0.25 1.19 16 32 H 0.27 7.92 8.73 -40.82 -0.36 7.56 16 33 H 0.39 6.95 8.54 -40.82 -0.35 6.60 16 34 H 0.41 4.62 8.72 -40.82 -0.36 4.26 16 35 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 38 H 0.10 1.29 8.04 -51.93 -0.42 0.87 16 39 H 0.05 0.48 8.02 -51.93 -0.42 0.06 16 40 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.09 0.91 6.27 -51.93 -0.33 0.59 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.09 0.95 8.09 -51.93 -0.42 0.53 16 47 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 378.62 15.07 5.71 5.71 Total: -1.00 -35.45 378.62 -10.30 -45.74 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -7.17 Total: 8.80 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -3.22 Total: 3.81 kcal Atomic # 7 Polarization: -66.39 SS G_CDS: -0.81 Total: -67.20 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.31 Total: -17.83 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -4.49 Total: 20.97 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.45 -10.30 -45.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889275323.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.194 kcal (2) G-P(sol) polarization free energy of solvation -35.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds