Wall clock time and date at job start Tue Mar 31 2020 19:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47649 * 2 1 4 4 C 1.50706 * 109.47096 * 239.99793 * 2 1 3 5 5 H 1.08006 * 119.99601 * 245.76520 * 4 2 1 6 6 C 1.37872 * 119.99883 * 65.76064 * 4 2 1 7 7 N 1.31508 * 120.00016 * 197.65417 * 6 4 2 8 8 Si 1.86805 * 119.99836 * 17.93837 * 6 4 2 9 9 H 1.48501 * 109.46769 * 179.72093 * 8 6 4 10 10 H 1.48496 * 109.46928 * 299.71985 * 8 6 4 11 11 H 1.48497 * 109.47330 * 59.72222 * 8 6 4 12 12 N 1.46504 * 109.47214 * 120.00200 * 2 1 3 13 13 C 1.34780 * 119.99678 * 274.99675 * 12 2 1 14 14 O 1.21582 * 120.00054 * 0.02562 * 13 12 2 15 15 N 1.34770 * 120.00109 * 179.97438 * 13 12 2 16 16 C 1.39395 * 120.00158 * 185.18669 * 15 13 12 17 17 C 1.39054 * 119.69756 * 185.74630 * 16 15 13 18 18 C 1.38342 * 119.09894 * 179.73096 * 17 16 15 19 19 C 1.38852 * 118.49917 * 0.53257 * 18 17 16 20 20 C 1.38064 * 119.31016 * 359.72833 * 19 18 17 21 21 C 1.50693 * 119.57509 * 180.02562 * 20 19 18 22 22 N 1.46901 * 109.47503 * 94.97658 * 21 20 19 23 23 C 1.47018 * 111.00076 * 293.63840 * 22 21 20 24 24 C 1.53093 * 109.25697 * 177.60453 * 23 22 21 25 25 O 1.43016 * 109.26153 * 56.85077 * 24 23 22 26 26 C 1.43023 * 113.73328 * 301.32606 * 25 24 23 27 27 C 1.47007 * 111.00336 * 169.99934 * 22 21 20 28 28 N 1.31944 * 120.84778 * 0.02562 * 20 19 18 29 29 H 1.08997 * 109.47504 * 175.15218 * 1 2 3 30 30 H 1.09006 * 109.46645 * 295.15417 * 1 2 3 31 31 H 1.09000 * 109.46876 * 55.14809 * 1 2 3 32 32 H 0.97001 * 120.00252 * 355.24410 * 7 6 4 33 33 H 0.96998 * 120.00549 * 94.99830 * 12 2 1 34 34 H 0.97001 * 120.00036 * 5.18724 * 15 13 12 35 35 H 1.07996 * 120.44559 * 359.97438 * 17 16 15 36 36 H 1.08001 * 120.74857 * 180.23841 * 18 17 16 37 37 H 1.07995 * 120.34495 * 179.70695 * 19 18 17 38 38 H 1.08998 * 109.47271 * 214.97622 * 21 20 19 39 39 H 1.09002 * 109.47443 * 334.97595 * 21 20 19 40 40 H 1.09005 * 109.50462 * 297.53910 * 23 22 21 41 41 H 1.09000 * 109.50693 * 57.66603 * 23 22 21 42 42 H 1.08996 * 109.51009 * 296.90795 * 24 23 22 43 43 H 1.09003 * 109.53839 * 176.80610 * 24 23 22 44 44 H 1.08997 * 109.50505 * 298.73693 * 26 25 24 45 45 H 1.08996 * 109.53680 * 178.63149 * 26 25 24 46 46 H 1.09002 * 109.50583 * 302.32489 * 27 22 21 47 47 H 1.09001 * 109.50559 * 62.45915 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.5743 -1.6397 -1.1340 6 6 1.7999 -0.1743 -2.4792 7 7 1.9155 -0.9283 -3.5505 8 14 1.3287 1.6252 -2.6500 9 1 1.1418 1.9538 -4.0861 10 1 0.0628 1.8772 -1.9158 11 1 2.4068 2.4752 -2.0840 12 7 2.0184 -0.6907 1.1962 13 6 2.1471 -0.0183 2.3571 14 8 1.8576 1.1613 2.4118 15 7 2.5959 -0.6536 3.4577 16 6 2.6270 0.0113 4.6824 17 6 3.2012 -0.6071 5.7877 18 6 3.2304 0.0664 6.9957 19 6 2.6719 1.3360 7.0602 20 6 2.1134 1.8871 5.9242 21 6 1.5062 3.2648 5.9872 22 7 2.5003 4.2582 5.5596 23 6 3.6165 4.3311 6.5137 24 6 4.6550 5.3319 6.0002 25 8 4.0284 6.6021 5.8020 26 6 2.9373 6.5678 4.8779 27 6 1.8814 5.5795 5.3800 28 7 2.1044 1.2230 4.7841 29 1 -0.3634 -1.0239 -0.0868 30 1 -0.3633 0.4369 0.9303 31 1 -0.3633 0.5873 -0.8433 32 1 2.2308 -1.8420 -3.4688 33 1 2.2491 -1.6318 1.1527 34 1 2.8973 -1.5737 3.3976 35 1 3.6222 -1.5980 5.7030 36 1 3.6732 -0.3872 7.8702 37 1 2.6742 1.8865 7.9893 38 1 0.6398 3.3106 5.3274 39 1 1.1956 3.4787 7.0100 40 1 3.2445 4.6584 7.4846 41 1 4.0761 3.3477 6.6119 42 1 5.0661 4.9773 5.0551 43 1 5.4573 5.4320 6.7313 44 1 3.2984 6.2491 3.9001 45 1 2.4968 7.5615 4.7971 46 1 1.0745 5.5074 4.6506 47 1 1.4817 5.9267 6.3328 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889275323.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:07 Heat of formation + Delta-G solvation = -38.243222 kcal Electronic energy + Delta-G solvation = -29094.988428 eV Core-core repulsion = 25084.595005 eV Total energy + Delta-G solvation = -4010.393423 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.86309 -40.76104 -40.09984 -37.33098 -36.73101 -35.64219 -34.45829 -33.39955 -32.35630 -31.98823 -30.79946 -29.00183 -26.89653 -25.99014 -25.12264 -24.60869 -22.94511 -22.69744 -21.50823 -21.34761 -20.22846 -19.06101 -18.54161 -17.64092 -17.30040 -16.95929 -16.81441 -16.66692 -16.39346 -16.05025 -15.97751 -15.77682 -15.53240 -15.25794 -15.01539 -14.65918 -14.54389 -14.35974 -14.14263 -13.76239 -13.52866 -13.45087 -13.36305 -13.00381 -12.92364 -12.46328 -12.41309 -12.20183 -11.97123 -11.70917 -11.68062 -11.57795 -11.34997 -11.12362 -10.80696 -10.62261 -10.47533 -9.99621 -9.92536 -9.36718 -9.10952 -8.81289 -6.45224 0.15200 0.49278 1.44199 1.50176 1.59335 1.71524 2.19929 2.40075 2.66186 2.89305 3.00291 3.07609 3.19132 3.51145 3.83800 3.91340 3.97465 4.06881 4.12722 4.17292 4.24377 4.28933 4.36314 4.45871 4.52416 4.55707 4.59065 4.68099 4.70508 4.76892 4.78351 4.84472 4.86284 4.97516 4.99579 5.09088 5.27736 5.37842 5.42666 5.58200 5.64569 5.86753 5.94148 5.95484 5.99513 6.03988 6.12442 6.52505 6.97135 7.27960 7.39126 7.71213 8.58661 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011302 B = 0.003288 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.911641 B = 8512.600931 C =10319.416708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.266 3.734 3 H 0.018 0.982 4 C -0.613 4.613 5 H 0.043 0.957 6 C -0.002 4.002 7 N -0.926 5.926 8 Si 1.071 2.929 9 H -0.279 1.279 10 H -0.247 1.247 11 H -0.278 1.278 12 N -0.716 5.716 13 C 0.684 3.316 14 O -0.578 6.578 15 N -0.663 5.663 16 C 0.353 3.647 17 C -0.204 4.204 18 C -0.040 4.040 19 C -0.198 4.198 20 C 0.143 3.857 21 C 0.113 3.887 22 N -0.553 5.553 23 C 0.022 3.978 24 C 0.061 3.939 25 O -0.398 6.398 26 C 0.063 3.937 27 C 0.024 3.976 28 N -0.506 5.506 29 H 0.050 0.950 30 H 0.034 0.966 31 H 0.057 0.943 32 H 0.259 0.741 33 H 0.401 0.599 34 H 0.427 0.573 35 H 0.165 0.835 36 H 0.179 0.821 37 H 0.160 0.840 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.058 0.942 41 H 0.086 0.914 42 H 0.040 0.960 43 H 0.122 0.878 44 H 0.043 0.957 45 H 0.121 0.879 46 H 0.083 0.917 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.027 5.854 28.300 29.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.161 3.839 3 H 0.036 0.964 4 C -0.651 4.651 5 H 0.061 0.939 6 C -0.203 4.203 7 N -0.560 5.560 8 Si 0.894 3.106 9 H -0.205 1.205 10 H -0.172 1.172 11 H -0.203 1.203 12 N -0.370 5.370 13 C 0.383 3.617 14 O -0.453 6.453 15 N -0.313 5.313 16 C 0.121 3.879 17 C -0.228 4.228 18 C -0.065 4.065 19 C -0.220 4.220 20 C 0.004 3.996 21 C -0.015 4.015 22 N -0.279 5.279 23 C -0.106 4.106 24 C -0.016 4.016 25 O -0.317 6.317 26 C -0.014 4.014 27 C -0.104 4.104 28 N -0.221 5.221 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.235 0.765 34 H 0.266 0.734 35 H 0.183 0.817 36 H 0.197 0.803 37 H 0.177 0.823 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.077 0.923 41 H 0.104 0.896 42 H 0.058 0.942 43 H 0.140 0.860 44 H 0.061 0.939 45 H 0.139 0.861 46 H 0.102 0.898 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.152 8.444 25.989 27.411 hybrid contribution 0.714 -2.909 1.448 3.327 sum 2.867 5.535 27.437 28.136 Atomic orbital electron populations 1.22378 0.97808 1.01038 0.99821 1.18559 0.91117 0.92580 0.81666 0.96378 1.22241 1.40860 1.09657 0.92347 0.93855 1.26743 0.94070 1.07798 0.91712 1.70980 1.43361 1.09529 1.32179 0.83701 0.78713 0.71564 0.76585 1.20471 1.17206 1.20342 1.45294 1.69601 1.13831 1.08300 1.16354 0.79130 0.85304 0.80887 1.90976 1.55333 1.15025 1.83979 1.42639 1.66470 1.17077 1.05144 1.18603 0.94002 0.89740 0.85554 1.21772 1.05201 1.03662 0.92177 1.21766 0.94135 0.93025 0.97597 1.22126 1.02446 0.97851 0.99589 1.21107 0.95086 0.95444 0.87973 1.20876 0.93670 0.86651 1.00294 1.61981 1.10607 1.06855 1.48425 1.22828 0.92860 1.00833 0.94036 1.22771 0.94980 0.82803 1.01023 1.87936 1.48168 1.31133 1.64475 1.22753 0.86628 1.00346 0.91704 1.22760 0.97717 0.88326 1.01574 1.67274 1.19139 1.07529 1.28154 0.93059 0.94705 0.92415 0.93166 0.76491 0.73352 0.81698 0.80321 0.82275 0.91106 0.90358 0.92346 0.89591 0.94173 0.86028 0.93883 0.86127 0.89838 0.92497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.02 9.16 71.98 0.66 -6.36 16 2 C 0.27 13.18 2.14 44.25 0.09 13.27 16 3 H 0.02 1.00 6.22 -2.39 -0.01 0.99 16 4 C -0.61 -33.93 9.00 25.60 0.23 -33.70 16 5 H 0.04 2.50 7.96 -2.91 -0.02 2.48 16 6 C 0.00 -0.12 5.34 84.65 0.45 0.33 16 7 N -0.93 -56.26 13.70 21.44 0.29 -55.96 16 8 Si 1.07 51.63 26.44 68.60 1.81 53.45 16 9 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 10 H -0.25 -10.94 5.52 99.48 0.55 -10.39 16 11 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 12 N -0.72 -29.82 5.07 -461.41 -2.34 -32.16 16 13 C 0.68 28.18 8.48 179.06 1.52 29.70 16 14 O -0.58 -28.96 14.31 -3.97 -0.06 -29.02 16 15 N -0.66 -20.10 5.39 -322.20 -1.74 -21.84 16 16 C 0.35 10.38 7.41 132.92 0.98 11.36 16 17 C -0.20 -3.82 9.94 22.49 0.22 -3.60 16 18 C -0.04 -0.56 10.17 22.44 0.23 -0.33 16 19 C -0.20 -3.39 8.29 22.38 0.19 -3.21 16 20 C 0.14 3.73 5.65 42.50 0.24 3.97 16 21 C 0.11 2.66 5.28 85.55 0.45 3.11 16 22 N -0.55 -13.51 4.72 -899.80 -4.24 -17.76 16 23 C 0.02 0.42 5.33 86.31 0.46 0.88 16 24 C 0.06 1.21 7.01 72.01 0.50 1.71 16 25 O -0.40 -8.97 10.83 -148.98 -1.61 -10.58 16 26 C 0.06 1.30 7.01 72.02 0.50 1.81 16 27 C 0.02 0.50 5.64 86.32 0.49 0.99 16 28 N -0.51 -17.49 7.84 -181.12 -1.42 -18.91 16 29 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.03 1.55 8.14 -2.38 -0.02 1.53 16 31 H 0.06 2.67 4.84 -2.39 -0.01 2.66 16 32 H 0.26 15.70 8.73 -92.71 -0.81 14.89 16 33 H 0.40 14.34 8.54 -92.71 -0.79 13.55 16 34 H 0.43 9.10 8.72 -92.71 -0.81 8.29 16 35 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 36 H 0.18 0.99 8.06 -2.91 -0.02 0.97 16 37 H 0.16 1.66 8.06 -2.91 -0.02 1.63 16 38 H 0.07 1.98 8.04 -2.39 -0.02 1.96 16 39 H 0.08 1.32 8.02 -2.39 -0.02 1.30 16 40 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 41 H 0.09 1.62 6.27 -2.39 -0.01 1.61 16 42 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.04 1.05 8.14 -2.39 -0.02 1.04 16 45 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.08 1.82 8.09 -2.39 -0.02 1.80 16 47 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -80.15 378.62 -2.88 -83.02 By element: Atomic # 1 Polarization: 30.61 SS G_CDS: -0.79 Total: 29.82 kcal Atomic # 6 Polarization: 12.71 SS G_CDS: 7.23 Total: 19.94 kcal Atomic # 7 Polarization: -137.18 SS G_CDS: -9.45 Total: -146.63 kcal Atomic # 8 Polarization: -37.93 SS G_CDS: -1.67 Total: -39.60 kcal Atomic # 14 Polarization: 51.63 SS G_CDS: 1.81 Total: 53.45 kcal Total: -80.15 -2.88 -83.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889275323.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.781 kcal (2) G-P(sol) polarization free energy of solvation -80.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds