Wall clock time and date at job start Tue Mar 31 2020 17:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47152 * 2 1 4 4 O 1.42897 * 109.47322 * 119.99911 * 2 1 3 5 5 C 1.35484 * 117.00014 * 89.99888 * 4 2 1 6 6 C 1.39635 * 119.97623 * 179.72512 * 5 4 2 7 7 N 1.31529 * 120.03887 * 179.75021 * 6 5 4 8 8 C 1.33212 * 119.98727 * 0.52729 * 7 6 5 9 9 C 1.47908 * 120.02135 * 179.70606 * 8 7 6 10 10 O 1.21552 * 119.99517 * 180.02562 * 9 8 7 11 11 N 1.34773 * 120.00400 * 0.02562 * 9 8 7 12 12 C 1.46498 * 120.00287 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.47257 * 325.00324 * 12 11 9 14 14 C 1.53001 * 109.46785 * 85.00491 * 12 11 9 15 15 C 1.53001 * 109.47430 * 205.00207 * 12 11 9 16 16 C 1.53948 * 113.74348 * 162.20317 * 15 12 11 17 17 N 1.47815 * 86.03340 * 222.08637 * 16 15 12 18 18 C 1.36943 * 134.45486 * 204.64492 * 17 16 15 19 19 H 1.07994 * 120.00096 * 182.57650 * 18 17 16 20 20 C 1.38812 * 119.99639 * 2.57915 * 18 17 16 21 21 N 1.31618 * 120.00378 * 353.41642 * 20 18 17 22 22 Si 1.86805 * 119.99795 * 173.41424 * 20 18 17 23 23 H 1.48500 * 109.46739 * 94.97267 * 22 20 18 24 24 H 1.48498 * 109.46885 * 214.97337 * 22 20 18 25 25 H 1.48497 * 109.47177 * 334.97509 * 22 20 18 26 26 C 1.47578 * 91.05223 * 24.54514 * 17 16 15 27 27 C 1.39387 * 119.95550 * 359.72505 * 8 7 6 28 28 N 1.32082 * 119.96012 * 0.02562 * 27 8 7 29 29 H 1.08997 * 109.47027 * 59.99982 * 1 2 3 30 30 H 1.09006 * 109.47072 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46677 * 300.00105 * 1 2 3 32 32 H 1.09000 * 109.46677 * 239.99895 * 2 1 3 33 33 H 1.08997 * 109.47456 * 59.99569 * 3 2 1 34 34 H 1.09000 * 109.47423 * 180.02562 * 3 2 1 35 35 H 1.09010 * 109.46937 * 300.00209 * 3 2 1 36 36 H 1.07996 * 119.97906 * 0.02562 * 6 5 4 37 37 H 0.97001 * 119.99761 * 0.02562 * 11 9 8 38 38 H 1.09000 * 109.46901 * 304.48495 * 14 12 11 39 39 H 1.08991 * 109.47488 * 64.48750 * 14 12 11 40 40 H 1.09006 * 109.47126 * 184.49281 * 14 12 11 41 41 H 1.09001 * 112.94496 * 293.79327 * 15 12 11 42 42 H 1.09006 * 113.76352 * 336.34402 * 16 15 12 43 43 H 1.08991 * 113.76982 * 107.74569 * 16 15 12 44 44 H 0.96999 * 120.00342 * 179.97438 * 21 20 18 45 45 H 1.09003 * 113.76898 * 221.15134 * 26 17 16 46 46 H 1.09001 * 113.86846 * 89.77332 * 26 17 16 47 47 H 1.07996 * 120.02609 * 180.02562 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2114 -2.0090 1.0654 6 6 2.6818 -2.7281 2.1660 7 7 2.8766 -4.0254 2.0705 8 6 2.6351 -4.6520 0.9200 9 6 2.8601 -6.1097 0.8098 10 8 2.6400 -6.6809 -0.2403 11 7 3.3091 -6.8046 1.8737 12 6 3.5314 -8.2485 1.7647 13 1 2.7808 -8.6829 1.1043 14 6 4.9262 -8.5079 1.1918 15 6 3.4224 -8.8875 3.1506 16 6 3.2060 -10.4113 3.1154 17 7 2.2245 -10.1936 4.1990 18 6 1.7166 -10.9731 5.2039 19 1 0.9562 -10.5785 5.8615 20 6 2.1792 -12.2703 5.3772 21 7 3.0086 -12.7959 4.5006 22 14 1.6248 -13.2701 6.8546 23 1 0.4627 -14.1126 6.4740 24 1 2.7390 -14.1399 7.3099 25 1 1.2321 -12.3525 7.9540 26 6 2.0137 -8.7989 3.7649 27 6 2.1706 -3.9329 -0.1800 28 7 1.9709 -2.6310 -0.0805 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.1301 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8901 36 1 2.8815 -2.2196 3.0976 37 1 3.4843 -6.3488 2.7118 38 1 5.0310 -7.9862 0.2405 39 1 5.6794 -8.1442 1.8906 40 1 5.0618 -9.5782 1.0360 41 1 4.2168 -8.5726 3.8273 42 1 2.7625 -10.7706 2.1867 43 1 4.0798 -10.9863 3.4215 44 1 3.3321 -13.7022 4.6219 45 1 1.9373 -8.0891 4.5886 46 1 1.2194 -8.6817 3.0276 47 1 1.9740 -4.4398 -1.1132 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969666520.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:50 Heat of formation + Delta-G solvation = 26.104248 kcal Electronic energy + Delta-G solvation = -28064.363762 eV Core-core repulsion = 24056.760655 eV Total energy + Delta-G solvation = -4007.603107 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.79428 -39.91230 -38.99387 -37.91929 -35.00493 -34.49837 -33.83704 -32.16562 -31.32682 -30.07066 -27.78536 -27.45357 -25.71480 -25.21067 -24.59520 -23.88911 -22.15188 -21.55929 -20.43868 -19.36831 -19.05229 -18.29803 -17.67083 -16.72307 -16.48387 -15.96575 -15.48927 -15.34113 -15.19893 -14.78614 -14.70616 -14.46931 -13.97798 -13.83733 -13.62987 -13.40744 -13.15405 -12.95854 -12.83729 -12.53596 -12.31770 -12.18302 -12.05155 -11.76277 -11.55858 -11.35825 -11.32270 -11.23728 -11.20807 -10.89427 -10.66103 -10.37795 -10.34634 -9.89977 -9.79069 -9.52550 -9.39573 -9.17499 -8.82830 -8.70680 -6.85355 -5.74874 -3.05449 0.16155 0.62793 2.31619 2.60228 3.08203 3.40872 3.45958 3.48184 3.50929 3.56821 3.76521 4.05446 4.33668 4.43114 4.47750 4.65173 4.70857 4.79995 5.04917 5.10558 5.15204 5.18162 5.21608 5.24316 5.29897 5.43395 5.55750 5.56302 5.65600 5.67522 5.72385 5.84615 6.02999 6.09633 6.27917 6.39604 6.48710 6.56394 6.58428 6.65376 6.69334 6.81872 7.19317 7.24667 7.40427 7.57920 7.64054 8.00812 8.21313 9.07410 9.73782 10.63401 11.42893 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023192 B = 0.002025 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.997308 B =13824.744917 C =14514.454527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.077 3.923 3 C -0.151 4.151 4 O -0.289 6.289 5 C 0.296 3.704 6 C 0.045 3.955 7 N -0.374 5.374 8 C -0.015 4.015 9 C 0.577 3.423 10 O -0.536 6.536 11 N -0.695 5.695 12 C 0.149 3.851 13 H 0.090 0.910 14 C -0.157 4.157 15 C -0.147 4.147 16 C 0.176 3.824 17 N -0.612 5.612 18 C -0.222 4.222 19 H 0.079 0.921 20 C -0.008 4.008 21 N -0.921 5.921 22 Si 0.911 3.089 23 H -0.290 1.290 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.125 3.875 27 C 0.157 3.843 28 N -0.502 5.502 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.183 0.817 37 H 0.409 0.591 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.029 0.971 43 H 0.074 0.926 44 H 0.253 0.747 45 H 0.042 0.958 46 H 0.032 0.968 47 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.933 27.665 -10.107 29.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.021 3.979 3 C -0.208 4.208 4 O -0.194 6.194 5 C 0.112 3.888 6 C -0.122 4.122 7 N -0.091 5.091 8 C -0.154 4.154 9 C 0.361 3.639 10 O -0.413 6.413 11 N -0.345 5.345 12 C 0.044 3.956 13 H 0.108 0.892 14 C -0.216 4.216 15 C -0.167 4.167 16 C 0.050 3.950 17 N -0.338 5.338 18 C -0.350 4.350 19 H 0.097 0.903 20 C -0.205 4.205 21 N -0.568 5.568 22 Si 0.741 3.259 23 H -0.217 1.217 24 H -0.216 1.216 25 H -0.206 1.206 26 C -0.001 4.001 27 C -0.002 4.002 28 N -0.231 5.231 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.200 0.800 37 H 0.244 0.756 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.108 0.892 42 H 0.046 0.954 43 H 0.092 0.908 44 H 0.063 0.937 45 H 0.060 0.940 46 H 0.049 0.951 47 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 0.773 27.098 -10.448 29.053 hybrid contribution -0.461 -0.335 0.938 1.097 sum 0.312 26.763 -9.510 28.404 Atomic orbital electron populations 1.22235 0.94376 1.03140 1.03001 1.22516 0.94793 0.93055 0.87540 1.21919 1.02122 0.93448 1.03311 1.86309 1.79002 1.14957 1.39147 1.21296 0.90338 0.85936 0.91182 1.22978 1.01074 0.89373 0.98795 1.68383 1.08767 1.08299 1.23695 1.22084 1.05035 0.96650 0.91657 1.17446 0.77777 0.84247 0.84455 1.90808 1.52588 1.69453 1.28422 1.45995 1.64818 1.09622 1.14050 1.21217 0.97784 0.78190 0.98383 0.89209 1.22110 0.96306 1.02625 1.00532 1.23849 0.99009 1.00215 0.93582 1.22236 0.93703 0.88719 0.90311 1.46038 1.48748 1.08194 1.30856 1.19031 1.17524 0.94075 1.04372 0.90330 1.24775 1.00023 0.96841 0.98817 1.69820 1.36537 1.15105 1.35358 0.86123 0.77540 0.79991 0.82246 1.21732 1.21594 1.20602 1.22528 0.93430 0.88528 0.95573 1.23548 0.89294 0.87711 0.99649 1.68199 1.19714 1.10989 1.24242 0.90721 0.91904 0.91696 0.89013 0.91379 0.91652 0.90204 0.79962 0.75593 0.92795 0.92612 0.90964 0.89198 0.95352 0.90810 0.93661 0.94026 0.95083 0.79630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.04 9.53 37.16 0.35 -0.68 16 2 C 0.08 0.52 3.11 -26.73 -0.08 0.43 16 3 C -0.15 -0.69 9.56 37.16 0.36 -0.34 16 4 O -0.29 -2.45 9.76 -18.15 -0.18 -2.63 16 5 C 0.30 2.83 7.47 -16.71 -0.12 2.70 16 6 C 0.04 0.41 11.18 -17.16 -0.19 0.22 16 7 N -0.37 -4.14 9.70 -9.49 -0.09 -4.23 16 8 C -0.02 -0.18 6.74 -82.88 -0.56 -0.74 16 9 C 0.58 8.20 7.77 -12.30 -0.10 8.10 16 10 O -0.54 -8.92 16.00 5.32 0.09 -8.83 16 11 N -0.70 -9.60 4.94 -54.73 -0.27 -9.87 16 12 C 0.15 2.31 2.29 -67.93 -0.16 2.15 16 13 H 0.09 1.57 7.49 -51.93 -0.39 1.19 16 14 C -0.16 -2.21 9.43 37.16 0.35 -1.86 16 15 C -0.15 -2.65 3.35 -89.70 -0.30 -2.95 16 16 C 0.18 4.09 7.03 -2.84 -0.02 4.07 16 17 N -0.61 -15.86 3.70 -177.71 -0.66 -16.52 16 18 C -0.22 -6.33 10.69 -15.06 -0.16 -6.49 16 19 H 0.08 2.17 7.84 -52.49 -0.41 1.75 16 20 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 21 N -0.92 -27.46 11.43 55.49 0.63 -26.83 16 22 Si 0.91 22.33 29.56 -169.99 -5.02 17.31 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 C 0.13 2.58 8.38 -2.97 -0.02 2.56 16 27 C 0.16 1.69 10.76 -17.02 -0.18 1.50 16 28 N -0.50 -5.13 8.80 -12.76 -0.11 -5.24 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.68 6.99 -51.93 -0.36 0.31 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.08 0.25 8.14 -51.92 -0.42 -0.18 16 36 H 0.18 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.41 5.14 7.94 -40.82 -0.32 4.81 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 42 H 0.03 0.68 8.04 -51.93 -0.42 0.26 16 43 H 0.07 1.88 7.20 -51.93 -0.37 1.50 16 44 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 45 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.03 0.65 8.10 -51.93 -0.42 0.23 16 47 H 0.19 1.78 7.64 -52.49 -0.40 1.38 16 LS Contribution 395.17 15.07 5.96 5.96 Total: -1.00 -32.95 395.17 -7.90 -40.85 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -7.31 Total: 1.68 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: -0.94 Total: 8.35 kcal Atomic # 7 Polarization: -62.19 SS G_CDS: -0.50 Total: -62.69 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: -0.09 Total: -11.46 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.95 -7.90 -40.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969666520.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.958 kcal (2) G-P(sol) polarization free energy of solvation -32.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds