Wall clock time and date at job start Tue Mar 31 2020 17:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47152 * 2 1 4 4 O 1.42897 * 109.47322 * 119.99911 * 2 1 3 5 5 C 1.35484 * 117.00014 * 89.99888 * 4 2 1 6 6 C 1.39635 * 119.97623 * 179.72512 * 5 4 2 7 7 N 1.31529 * 120.03887 * 179.75021 * 6 5 4 8 8 C 1.33212 * 119.98727 * 0.52729 * 7 6 5 9 9 C 1.47908 * 120.02135 * 179.70606 * 8 7 6 10 10 O 1.21552 * 119.99517 * 180.02562 * 9 8 7 11 11 N 1.34773 * 120.00400 * 0.02562 * 9 8 7 12 12 C 1.46498 * 120.00287 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.47257 * 325.00324 * 12 11 9 14 14 C 1.53001 * 109.46785 * 85.00491 * 12 11 9 15 15 C 1.53001 * 109.47430 * 205.00207 * 12 11 9 16 16 C 1.53948 * 113.74348 * 162.20317 * 15 12 11 17 17 N 1.47815 * 86.03340 * 222.08637 * 16 15 12 18 18 C 1.36943 * 134.45486 * 204.64492 * 17 16 15 19 19 H 1.07994 * 120.00096 * 182.57650 * 18 17 16 20 20 C 1.38812 * 119.99639 * 2.57915 * 18 17 16 21 21 N 1.31618 * 120.00378 * 353.41642 * 20 18 17 22 22 Si 1.86805 * 119.99795 * 173.41424 * 20 18 17 23 23 H 1.48500 * 109.46739 * 94.97267 * 22 20 18 24 24 H 1.48498 * 109.46885 * 214.97337 * 22 20 18 25 25 H 1.48497 * 109.47177 * 334.97509 * 22 20 18 26 26 C 1.47578 * 91.05223 * 24.54514 * 17 16 15 27 27 C 1.39387 * 119.95550 * 359.72505 * 8 7 6 28 28 N 1.32082 * 119.96012 * 0.02562 * 27 8 7 29 29 H 1.08997 * 109.47027 * 59.99982 * 1 2 3 30 30 H 1.09006 * 109.47072 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46677 * 300.00105 * 1 2 3 32 32 H 1.09000 * 109.46677 * 239.99895 * 2 1 3 33 33 H 1.08997 * 109.47456 * 59.99569 * 3 2 1 34 34 H 1.09000 * 109.47423 * 180.02562 * 3 2 1 35 35 H 1.09010 * 109.46937 * 300.00209 * 3 2 1 36 36 H 1.07996 * 119.97906 * 0.02562 * 6 5 4 37 37 H 0.97001 * 119.99761 * 0.02562 * 11 9 8 38 38 H 1.09000 * 109.46901 * 304.48495 * 14 12 11 39 39 H 1.08991 * 109.47488 * 64.48750 * 14 12 11 40 40 H 1.09006 * 109.47126 * 184.49281 * 14 12 11 41 41 H 1.09001 * 112.94496 * 293.79327 * 15 12 11 42 42 H 1.09006 * 113.76352 * 336.34402 * 16 15 12 43 43 H 1.08991 * 113.76982 * 107.74569 * 16 15 12 44 44 H 0.96999 * 120.00342 * 179.97438 * 21 20 18 45 45 H 1.09003 * 113.76898 * 221.15134 * 26 17 16 46 46 H 1.09001 * 113.86846 * 89.77332 * 26 17 16 47 47 H 1.07996 * 120.02609 * 180.02562 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2114 -2.0090 1.0654 6 6 2.6818 -2.7281 2.1660 7 7 2.8766 -4.0254 2.0705 8 6 2.6351 -4.6520 0.9200 9 6 2.8601 -6.1097 0.8098 10 8 2.6400 -6.6809 -0.2403 11 7 3.3091 -6.8046 1.8737 12 6 3.5314 -8.2485 1.7647 13 1 2.7808 -8.6829 1.1043 14 6 4.9262 -8.5079 1.1918 15 6 3.4224 -8.8875 3.1506 16 6 3.2060 -10.4113 3.1154 17 7 2.2245 -10.1936 4.1990 18 6 1.7166 -10.9731 5.2039 19 1 0.9562 -10.5785 5.8615 20 6 2.1792 -12.2703 5.3772 21 7 3.0086 -12.7959 4.5006 22 14 1.6248 -13.2701 6.8546 23 1 0.4627 -14.1126 6.4740 24 1 2.7390 -14.1399 7.3099 25 1 1.2321 -12.3525 7.9540 26 6 2.0137 -8.7989 3.7649 27 6 2.1706 -3.9329 -0.1800 28 7 1.9709 -2.6310 -0.0805 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.1301 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8901 36 1 2.8815 -2.2196 3.0976 37 1 3.4843 -6.3488 2.7118 38 1 5.0310 -7.9862 0.2405 39 1 5.6794 -8.1442 1.8906 40 1 5.0618 -9.5782 1.0360 41 1 4.2168 -8.5726 3.8273 42 1 2.7625 -10.7706 2.1867 43 1 4.0798 -10.9863 3.4215 44 1 3.3321 -13.7022 4.6219 45 1 1.9373 -8.0891 4.5886 46 1 1.2194 -8.6817 3.0276 47 1 1.9740 -4.4398 -1.1132 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969666520.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:49 Heat of formation + Delta-G solvation = 2.551937 kcal Electronic energy + Delta-G solvation = -28065.385067 eV Core-core repulsion = 24056.760655 eV Total energy + Delta-G solvation = -4008.624412 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.59169 -41.00787 -39.97790 -39.34258 -36.28961 -35.41027 -34.39869 -34.12063 -32.38624 -31.19436 -29.31856 -28.20298 -26.77365 -26.35348 -25.95256 -25.45238 -23.22309 -22.52805 -21.60118 -20.93952 -19.72782 -19.21414 -18.87129 -18.57147 -17.27772 -17.12632 -16.78502 -16.45989 -16.15089 -15.98871 -15.81243 -15.61354 -15.29664 -14.99052 -14.79438 -14.51636 -14.28920 -14.02084 -13.48339 -13.37425 -13.25708 -13.22050 -13.07868 -13.03944 -12.98464 -12.91523 -12.67052 -12.46448 -12.36835 -12.06829 -11.89917 -11.80316 -11.76433 -11.61708 -11.35093 -11.20666 -10.81231 -10.40837 -10.16447 -9.83101 -8.92257 -7.90748 -5.22920 -0.67827 -0.14485 1.45930 1.47530 1.57096 1.61398 1.64266 2.00746 2.47913 2.62005 2.81792 2.92161 3.28150 3.30564 3.38600 3.66900 3.83278 3.87591 3.95771 3.96985 4.03894 4.21680 4.28073 4.45048 4.46888 4.57862 4.59452 4.70380 4.77896 4.80370 4.84918 4.86246 4.87376 4.96140 5.03030 5.09090 5.20656 5.24844 5.25587 5.32385 5.47892 5.55309 5.66026 5.89084 5.90486 5.94427 6.34514 6.59300 6.92760 7.11459 7.61164 8.57310 9.26807 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023192 B = 0.002025 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.997308 B =13824.744917 C =14514.454527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.070 3.930 3 C -0.146 4.146 4 O -0.289 6.289 5 C 0.300 3.700 6 C 0.052 3.948 7 N -0.382 5.382 8 C -0.032 4.032 9 C 0.580 3.420 10 O -0.565 6.565 11 N -0.690 5.690 12 C 0.160 3.840 13 H 0.069 0.931 14 C -0.151 4.151 15 C -0.109 4.109 16 C 0.172 3.828 17 N -0.643 5.643 18 C -0.237 4.237 19 H 0.082 0.918 20 C -0.067 4.067 21 N -0.953 5.953 22 Si 0.979 3.021 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.267 1.267 26 C 0.127 3.873 27 C 0.159 3.841 28 N -0.508 5.508 29 H 0.091 0.909 30 H 0.044 0.956 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.097 0.903 36 H 0.214 0.786 37 H 0.417 0.583 38 H 0.056 0.944 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.105 0.895 42 H 0.014 0.986 43 H 0.047 0.953 44 H 0.249 0.751 45 H 0.059 0.941 46 H 0.032 0.968 47 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.913 30.349 -9.373 31.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.014 3.986 3 C -0.203 4.203 4 O -0.194 6.194 5 C 0.115 3.885 6 C -0.116 4.116 7 N -0.099 5.099 8 C -0.169 4.169 9 C 0.365 3.635 10 O -0.444 6.444 11 N -0.339 5.339 12 C 0.055 3.945 13 H 0.087 0.913 14 C -0.209 4.209 15 C -0.129 4.129 16 C 0.046 3.954 17 N -0.370 5.370 18 C -0.366 4.366 19 H 0.100 0.900 20 C -0.260 4.260 21 N -0.601 5.601 22 Si 0.807 3.193 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.192 1.192 26 C 0.002 3.998 27 C 0.000 4.000 28 N -0.237 5.237 29 H 0.110 0.890 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.116 0.884 36 H 0.230 0.770 37 H 0.254 0.746 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.123 0.877 42 H 0.032 0.968 43 H 0.065 0.935 44 H 0.058 0.942 45 H 0.077 0.923 46 H 0.050 0.950 47 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 0.744 29.828 -9.717 31.379 hybrid contribution -0.518 -0.997 0.675 1.310 sum 0.227 28.831 -9.042 30.217 Atomic orbital electron populations 1.22222 0.93897 1.02237 1.04075 1.22753 0.95238 0.93990 0.86610 1.21929 1.02062 0.91948 1.04387 1.86326 1.78669 1.14289 1.40067 1.21514 0.89453 0.86458 0.91075 1.23470 0.99776 0.88688 0.99711 1.68348 1.09111 1.09212 1.23257 1.21712 1.07128 0.95409 0.92695 1.17690 0.76871 0.85162 0.83818 1.90790 1.53795 1.70373 1.29475 1.45811 1.64907 1.08644 1.14582 1.20881 0.98307 0.79162 0.96117 0.91313 1.22047 0.95480 1.02450 1.00973 1.23448 0.98007 0.96352 0.95105 1.22142 0.92222 0.91985 0.89012 1.46472 1.49330 1.10157 1.31036 1.19431 1.17350 0.94682 1.05097 0.90044 1.25633 1.00636 0.98087 1.01624 1.70005 1.37933 1.15119 1.37079 0.85063 0.76765 0.78318 0.79173 1.21676 1.21783 1.19152 1.22661 0.94771 0.86316 0.96058 1.23601 0.88922 0.87899 0.99576 1.68239 1.20078 1.10632 1.24796 0.89028 0.93725 0.91291 0.89779 0.90986 0.91743 0.88447 0.76952 0.74593 0.92523 0.90980 0.91466 0.87725 0.96776 0.93487 0.94182 0.92314 0.95044 0.79131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.75 9.53 71.98 0.69 -1.07 16 2 C 0.07 0.81 3.11 30.60 0.10 0.90 16 3 C -0.15 -1.00 9.56 71.98 0.69 -0.31 16 4 O -0.29 -4.30 9.76 -87.84 -0.86 -5.16 16 5 C 0.30 5.18 7.47 84.92 0.63 5.81 16 6 C 0.05 0.83 11.18 85.08 0.95 1.78 16 7 N -0.38 -7.77 9.70 -183.93 -1.78 -9.55 16 8 C -0.03 -0.74 6.74 41.77 0.28 -0.45 16 9 C 0.58 16.13 7.77 86.81 0.67 16.80 16 10 O -0.57 -18.87 16.00 -3.88 -0.06 -18.94 16 11 N -0.69 -18.26 4.94 -445.34 -2.20 -20.46 16 12 C 0.16 4.90 2.29 44.99 0.10 5.00 16 13 H 0.07 2.44 7.49 -2.39 -0.02 2.42 16 14 C -0.15 -4.10 9.43 71.98 0.68 -3.43 16 15 C -0.11 -3.89 3.35 -10.14 -0.03 -3.92 16 16 C 0.17 8.19 7.03 86.44 0.61 8.80 16 17 N -0.64 -33.63 3.70 -716.15 -2.65 -36.28 16 18 C -0.24 -13.59 10.69 84.03 0.90 -12.70 16 19 H 0.08 4.47 7.84 -2.91 -0.02 4.45 16 20 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 21 N -0.95 -58.13 11.43 21.65 0.25 -57.88 16 22 Si 0.98 46.27 29.56 68.60 2.03 48.30 16 23 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 24 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 25 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 26 C 0.13 5.13 8.38 86.48 0.72 5.86 16 27 C 0.16 3.30 10.76 84.93 0.91 4.21 16 28 N -0.51 -9.80 8.80 -307.08 -2.70 -12.51 16 29 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.04 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.08 1.12 6.99 -2.39 -0.02 1.11 16 33 H 0.07 0.45 8.14 -2.39 -0.02 0.44 16 34 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.10 0.34 8.14 -2.38 -0.02 0.32 16 36 H 0.21 1.95 8.06 -2.91 -0.02 1.93 16 37 H 0.42 9.71 7.94 -92.71 -0.74 8.97 16 38 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 41 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 42 H 0.01 0.72 8.04 -2.38 -0.02 0.70 16 43 H 0.05 2.47 7.20 -2.39 -0.02 2.46 16 44 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 45 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 46 H 0.03 1.30 8.10 -2.39 -0.02 1.28 16 47 H 0.19 3.63 7.64 -2.91 -0.02 3.61 16 Total: -1.00 -71.63 395.17 0.63 -71.01 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 0.24 Total: 17.58 kcal Atomic # 6 Polarization: 15.52 SS G_CDS: 8.37 Total: 23.89 kcal Atomic # 7 Polarization: -127.59 SS G_CDS: -9.09 Total: -136.68 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.92 Total: -24.10 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -71.63 0.63 -71.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969666520.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.558 kcal (2) G-P(sol) polarization free energy of solvation -71.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds