Wall clock time and date at job start Tue Mar 31 2020 19:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47387 * 2 1 4 4 N 1.46500 * 109.46896 * 239.99919 * 2 1 3 5 5 C 1.34781 * 119.99871 * 85.00075 * 4 2 1 6 6 O 1.21595 * 119.99753 * 0.02562 * 5 4 2 7 7 C 1.47565 * 120.00325 * 179.97438 * 5 4 2 8 8 C 1.38048 * 119.73172 * 179.73174 * 7 5 4 9 9 N 1.34871 * 119.95140 * 179.74637 * 8 7 5 10 10 C 1.46502 * 120.31255 * 180.24227 * 9 8 7 11 11 C 1.34960 * 119.38613 * 0.52221 * 9 8 7 12 12 O 1.21860 * 120.27406 * 179.74621 * 11 9 8 13 13 C 1.41788 * 119.45570 * 359.72141 * 11 9 8 14 14 N 1.30606 * 120.03496 * 0.02682 * 13 11 9 15 15 C 1.52998 * 109.47298 * 120.00428 * 2 1 3 16 16 H 1.09005 * 109.52424 * 59.91283 * 15 2 1 17 17 C 1.53041 * 109.49655 * 299.83927 * 15 2 1 18 18 C 1.53070 * 109.65895 * 178.74768 * 17 15 2 19 19 C 1.53192 * 109.29486 * 61.15317 * 18 17 15 20 20 N 1.46923 * 108.89086 * 305.57609 * 19 18 17 21 21 C 1.36938 * 120.62890 * 233.55909 * 20 19 18 22 22 H 1.08011 * 119.99821 * 151.82869 * 21 20 19 23 23 C 1.38810 * 120.00150 * 331.82504 * 21 20 19 24 24 N 1.31613 * 120.00273 * 343.07447 * 23 21 20 25 25 Si 1.86803 * 119.99828 * 163.06738 * 23 21 20 26 26 H 1.48503 * 109.47179 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.47229 * 120.00279 * 25 23 21 28 28 H 1.48502 * 109.47136 * 240.00365 * 25 23 21 29 29 C 1.46928 * 118.73969 * 53.53853 * 20 19 18 30 30 H 1.09000 * 109.46924 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46896 * 299.99539 * 1 2 3 32 32 H 1.08999 * 109.47018 * 59.99567 * 1 2 3 33 33 H 0.96997 * 120.00877 * 264.99723 * 4 2 1 34 34 H 1.08001 * 120.02092 * 0.02562 * 8 7 5 35 35 H 1.08993 * 109.47815 * 180.27823 * 10 9 8 36 36 H 1.09005 * 109.47103 * 300.28378 * 10 9 8 37 37 H 1.09003 * 109.47042 * 60.27538 * 10 9 8 38 38 H 1.08005 * 119.98286 * 179.97438 * 13 11 9 39 39 H 1.09004 * 109.45782 * 298.70130 * 17 15 2 40 40 H 1.08998 * 109.46417 * 58.67464 * 17 15 2 41 41 H 1.08996 * 109.39171 * 301.27441 * 18 17 15 42 42 H 1.09003 * 109.62547 * 181.16407 * 18 17 15 43 43 H 1.09002 * 109.58742 * 185.72218 * 19 18 17 44 44 H 1.08998 * 109.59351 * 65.43846 * 19 18 17 45 45 H 0.96997 * 120.00271 * 180.02562 * 24 23 21 46 46 H 1.09004 * 109.58144 * 66.18005 * 29 20 19 47 47 H 1.08998 * 109.58393 * 186.45981 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3572 6 8 1.8583 1.1617 -2.4116 7 6 2.6394 -0.7137 -3.5620 8 6 2.7638 -0.0209 -4.7496 9 7 3.2182 -0.6509 -5.8522 10 6 3.3583 0.0780 -7.1153 11 6 3.5372 -1.9603 -5.7826 12 8 3.9449 -2.5466 -6.7700 13 6 3.3947 -2.6482 -4.5510 14 7 2.9573 -2.0154 -3.4955 15 6 2.0401 -0.7213 1.2492 16 1 1.6759 -1.7488 1.2507 17 6 1.5336 0.0019 2.4992 18 6 2.0159 -0.7348 3.7513 19 6 3.5476 -0.7382 3.7781 20 7 4.0442 -1.3006 2.5149 21 6 4.9301 -2.3449 2.5166 22 1 4.9508 -3.0369 1.6876 23 6 5.8015 -2.5140 3.5838 24 7 6.0199 -1.5205 4.4189 25 14 6.6641 -4.1518 3.8347 26 1 6.2515 -5.0974 2.7666 27 1 8.1344 -3.9510 3.7765 28 1 6.2926 -4.7090 5.1602 29 6 3.5719 -0.7217 1.2498 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 2.2491 -1.6318 -1.1528 34 1 2.5017 1.0258 -4.7945 35 1 3.7319 -0.5972 -7.8850 36 1 2.3877 0.4716 -7.4172 37 1 4.0594 0.9021 -6.9834 38 1 3.6472 -3.6963 -4.4858 39 1 1.9183 1.0217 2.5096 40 1 0.4439 0.0249 2.4890 41 1 1.6501 -1.7613 3.7307 42 1 1.6377 -0.2311 4.6409 43 1 3.8971 -1.3474 4.6117 44 1 3.9134 0.2822 3.8926 45 1 6.6292 -1.6385 5.1644 46 1 3.9377 0.3009 1.1569 47 1 3.9396 -1.3185 0.4151 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025484413.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:32 Heat of formation + Delta-G solvation = -7.332761 kcal Electronic energy + Delta-G solvation = -29160.733570 eV Core-core repulsion = 25151.680526 eV Total energy + Delta-G solvation = -4009.053044 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.22118 -39.86628 -38.15147 -37.51936 -36.32838 -35.22718 -32.99097 -31.35721 -30.56983 -30.33582 -28.86563 -28.41114 -25.43065 -25.06639 -24.57681 -23.31443 -21.93291 -21.17354 -20.31938 -19.32108 -18.92843 -18.26142 -17.24573 -16.86826 -16.67515 -15.94161 -15.88950 -15.05760 -14.90321 -14.75992 -14.45600 -14.26561 -14.02246 -13.78293 -13.61042 -13.37838 -13.14546 -13.03387 -12.89987 -12.50231 -12.42822 -12.21383 -11.83343 -11.78221 -11.50854 -11.45292 -11.08124 -10.94961 -10.64801 -10.38898 -10.28127 -10.13666 -10.11138 -9.86690 -9.74144 -9.52039 -9.39101 -8.94636 -8.53854 -8.43627 -6.63031 -5.75896 -3.18478 0.12024 0.91887 1.81605 2.65803 3.14305 3.38806 3.46587 3.46874 3.49030 3.79148 3.82712 4.23874 4.47760 4.50745 4.60452 4.69407 4.89245 5.01657 5.03097 5.28520 5.37304 5.40506 5.45348 5.57602 5.61349 5.65346 5.79634 5.82970 6.03966 6.08514 6.10296 6.14535 6.32944 6.38023 6.45884 6.58643 6.65296 6.73697 6.84848 6.90522 7.01798 7.10103 7.28358 7.43147 7.65610 7.70917 7.82852 8.23064 8.48151 9.24561 9.88103 10.44968 11.32438 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011768 B = 0.003156 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.703205 B = 8869.415411 C =10700.427449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.147 3.853 3 H 0.088 0.912 4 N -0.697 5.697 5 C 0.590 3.410 6 O -0.550 6.550 7 C -0.072 4.072 8 C 0.170 3.830 9 N -0.482 5.482 10 C 0.047 3.953 11 C 0.475 3.525 12 O -0.524 6.524 13 C 0.043 3.957 14 N -0.370 5.370 15 C -0.111 4.111 16 H 0.073 0.927 17 C -0.100 4.100 18 C -0.142 4.142 19 C 0.169 3.831 20 N -0.591 5.591 21 C -0.250 4.250 22 H 0.066 0.934 23 C 0.002 3.998 24 N -0.902 5.902 25 Si 0.900 3.100 26 H -0.277 1.277 27 H -0.291 1.291 28 H -0.289 1.289 29 C 0.155 3.845 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.412 0.588 34 H 0.188 0.812 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.195 0.805 39 H 0.055 0.945 40 H 0.050 0.950 41 H 0.053 0.947 42 H 0.049 0.951 43 H 0.085 0.915 44 H 0.016 0.984 45 H 0.252 0.748 46 H 0.016 0.984 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.773 4.150 -17.958 21.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.043 3.957 3 H 0.106 0.894 4 N -0.346 5.346 5 C 0.375 3.625 6 O -0.429 6.429 7 C -0.196 4.196 8 C 0.035 3.965 9 N -0.193 5.193 10 C -0.093 4.093 11 C 0.272 3.728 12 O -0.400 6.400 13 C -0.148 4.148 14 N -0.085 5.085 15 C -0.132 4.132 16 H 0.091 0.909 17 C -0.139 4.139 18 C -0.181 4.181 19 C 0.043 3.957 20 N -0.313 5.313 21 C -0.380 4.380 22 H 0.083 0.917 23 C -0.197 4.197 24 N -0.547 5.547 25 Si 0.730 3.270 26 H -0.202 1.202 27 H -0.218 1.218 28 H -0.216 1.216 29 C 0.028 3.972 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.248 0.752 34 H 0.205 0.795 35 H 0.126 0.874 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.212 0.788 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.104 0.896 44 H 0.034 0.966 45 H 0.062 0.938 46 H 0.033 0.967 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.717 4.386 -17.723 21.171 hybrid contribution 0.750 -0.788 -0.534 1.212 sum -9.967 3.598 -18.257 21.110 Atomic orbital electron populations 1.22204 0.95572 1.01992 1.02158 1.21120 0.93551 0.97545 0.83522 0.89441 1.45871 1.65051 1.14887 1.08788 1.17150 0.77504 0.85649 0.82237 1.90788 1.52259 1.14969 1.84920 1.20505 1.13601 0.91004 0.94487 1.23199 0.88255 1.00195 0.84872 1.45571 1.50401 1.11872 1.11427 1.22425 1.04367 0.98069 0.84482 1.18875 0.80518 0.81055 0.92391 1.90945 1.46213 1.65100 1.37700 1.24767 1.01945 1.01990 0.86055 1.67701 1.02558 1.07446 1.30810 1.21965 0.99595 0.99287 0.92314 0.90902 1.21444 0.98722 0.99023 0.94669 1.22179 1.00868 0.99372 0.95697 1.20783 0.87472 0.97205 0.90239 1.44040 1.49919 1.37888 0.99477 1.19224 1.10944 1.01869 1.05971 0.91658 1.25037 0.97264 0.97441 0.99929 1.70045 1.37806 1.29284 1.17568 0.86254 0.79057 0.83906 0.77757 1.20201 1.21803 1.21609 1.20864 0.89836 0.96348 0.90110 0.92586 0.91202 0.92669 0.75210 0.79513 0.87360 0.89308 0.89218 0.78828 0.92617 0.93120 0.92786 0.93238 0.89644 0.96553 0.93752 0.96662 0.92909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 9.14 37.16 0.34 -1.61 16 2 C 0.15 2.07 2.16 -67.93 -0.15 1.92 16 3 H 0.09 1.36 7.58 -51.93 -0.39 0.97 16 4 N -0.70 -9.43 4.47 -54.83 -0.24 -9.68 16 5 C 0.59 7.97 7.75 -12.45 -0.10 7.87 16 6 O -0.55 -8.45 15.94 5.28 0.08 -8.36 16 7 C -0.07 -0.82 6.71 -83.11 -0.56 -1.38 16 8 C 0.17 1.46 9.96 -16.29 -0.16 1.30 16 9 N -0.48 -3.98 2.97 -126.20 -0.38 -4.35 16 10 C 0.05 0.22 10.64 59.85 0.64 0.86 16 11 C 0.47 5.07 7.46 -14.82 -0.11 4.96 16 12 O -0.52 -6.89 16.49 5.05 0.08 -6.81 16 13 C 0.04 0.44 11.23 -16.72 -0.19 0.25 16 14 N -0.37 -4.25 9.62 -9.34 -0.09 -4.34 16 15 C -0.11 -1.80 1.98 -90.50 -0.18 -1.98 16 16 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 17 C -0.10 -1.61 4.85 -26.67 -0.13 -1.74 16 18 C -0.14 -2.64 6.09 -26.60 -0.16 -2.80 16 19 C 0.17 3.99 5.30 -3.71 -0.02 3.97 16 20 N -0.59 -14.62 3.00 -172.32 -0.52 -15.13 16 21 C -0.25 -6.82 9.58 -15.06 -0.14 -6.97 16 22 H 0.07 1.75 7.89 -52.48 -0.41 1.34 16 23 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 24 N -0.90 -26.22 11.20 55.49 0.62 -25.60 16 25 Si 0.90 21.67 29.59 -169.99 -5.03 16.64 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 29 C 0.16 3.18 5.55 -3.71 -0.02 3.16 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.79 6.41 -51.93 -0.33 0.46 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.41 5.45 7.73 -40.82 -0.32 5.13 16 34 H 0.19 1.19 7.58 -52.49 -0.40 0.79 16 35 H 0.11 0.62 6.94 -51.93 -0.36 0.26 16 36 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.20 1.55 8.06 -52.48 -0.42 1.13 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.05 0.69 6.37 -51.93 -0.33 0.36 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.09 2.27 6.06 -51.93 -0.31 1.96 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 46 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.05 1.08 7.44 -51.93 -0.39 0.69 16 LS Contribution 379.69 15.07 5.72 5.72 Total: -1.00 -33.54 379.69 -7.80 -41.35 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -7.03 Total: 2.78 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: -1.03 Total: 7.78 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: -0.60 Total: -59.11 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: 0.17 Total: -15.17 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.54 -7.80 -41.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025484413.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.014 kcal (2) G-P(sol) polarization free energy of solvation -33.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds