Wall clock time and date at job start Tue Mar 31 2020 19:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47387 * 2 1 4 4 N 1.46500 * 109.46896 * 239.99919 * 2 1 3 5 5 C 1.34781 * 119.99871 * 85.00075 * 4 2 1 6 6 O 1.21595 * 119.99753 * 0.02562 * 5 4 2 7 7 C 1.47565 * 120.00325 * 179.97438 * 5 4 2 8 8 C 1.38048 * 119.73172 * 179.73174 * 7 5 4 9 9 N 1.34871 * 119.95140 * 179.74637 * 8 7 5 10 10 C 1.46502 * 120.31255 * 180.24227 * 9 8 7 11 11 C 1.34960 * 119.38613 * 0.52221 * 9 8 7 12 12 O 1.21860 * 120.27406 * 179.74621 * 11 9 8 13 13 C 1.41788 * 119.45570 * 359.72141 * 11 9 8 14 14 N 1.30606 * 120.03496 * 0.02682 * 13 11 9 15 15 C 1.52998 * 109.47298 * 120.00428 * 2 1 3 16 16 H 1.09005 * 109.52424 * 59.91283 * 15 2 1 17 17 C 1.53041 * 109.49655 * 299.83927 * 15 2 1 18 18 C 1.53070 * 109.65895 * 178.74768 * 17 15 2 19 19 C 1.53192 * 109.29486 * 61.15317 * 18 17 15 20 20 N 1.46923 * 108.89086 * 305.57609 * 19 18 17 21 21 C 1.36938 * 120.62890 * 233.55909 * 20 19 18 22 22 H 1.08011 * 119.99821 * 151.82869 * 21 20 19 23 23 C 1.38810 * 120.00150 * 331.82504 * 21 20 19 24 24 N 1.31613 * 120.00273 * 343.07447 * 23 21 20 25 25 Si 1.86803 * 119.99828 * 163.06738 * 23 21 20 26 26 H 1.48503 * 109.47179 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.47229 * 120.00279 * 25 23 21 28 28 H 1.48502 * 109.47136 * 240.00365 * 25 23 21 29 29 C 1.46928 * 118.73969 * 53.53853 * 20 19 18 30 30 H 1.09000 * 109.46924 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46896 * 299.99539 * 1 2 3 32 32 H 1.08999 * 109.47018 * 59.99567 * 1 2 3 33 33 H 0.96997 * 120.00877 * 264.99723 * 4 2 1 34 34 H 1.08001 * 120.02092 * 0.02562 * 8 7 5 35 35 H 1.08993 * 109.47815 * 180.27823 * 10 9 8 36 36 H 1.09005 * 109.47103 * 300.28378 * 10 9 8 37 37 H 1.09003 * 109.47042 * 60.27538 * 10 9 8 38 38 H 1.08005 * 119.98286 * 179.97438 * 13 11 9 39 39 H 1.09004 * 109.45782 * 298.70130 * 17 15 2 40 40 H 1.08998 * 109.46417 * 58.67464 * 17 15 2 41 41 H 1.08996 * 109.39171 * 301.27441 * 18 17 15 42 42 H 1.09003 * 109.62547 * 181.16407 * 18 17 15 43 43 H 1.09002 * 109.58742 * 185.72218 * 19 18 17 44 44 H 1.08998 * 109.59351 * 65.43846 * 19 18 17 45 45 H 0.96997 * 120.00271 * 180.02562 * 24 23 21 46 46 H 1.09004 * 109.58144 * 66.18005 * 29 20 19 47 47 H 1.08998 * 109.58393 * 186.45981 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3572 6 8 1.8583 1.1617 -2.4116 7 6 2.6394 -0.7137 -3.5620 8 6 2.7638 -0.0209 -4.7496 9 7 3.2182 -0.6509 -5.8522 10 6 3.3583 0.0780 -7.1153 11 6 3.5372 -1.9603 -5.7826 12 8 3.9449 -2.5466 -6.7700 13 6 3.3947 -2.6482 -4.5510 14 7 2.9573 -2.0154 -3.4955 15 6 2.0401 -0.7213 1.2492 16 1 1.6759 -1.7488 1.2507 17 6 1.5336 0.0019 2.4992 18 6 2.0159 -0.7348 3.7513 19 6 3.5476 -0.7382 3.7781 20 7 4.0442 -1.3006 2.5149 21 6 4.9301 -2.3449 2.5166 22 1 4.9508 -3.0369 1.6876 23 6 5.8015 -2.5140 3.5838 24 7 6.0199 -1.5205 4.4189 25 14 6.6641 -4.1518 3.8347 26 1 6.2515 -5.0974 2.7666 27 1 8.1344 -3.9510 3.7765 28 1 6.2926 -4.7090 5.1602 29 6 3.5719 -0.7217 1.2498 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 2.2491 -1.6318 -1.1528 34 1 2.5017 1.0258 -4.7945 35 1 3.7319 -0.5972 -7.8850 36 1 2.3877 0.4716 -7.4172 37 1 4.0594 0.9021 -6.9834 38 1 3.6472 -3.6963 -4.4858 39 1 1.9183 1.0217 2.5096 40 1 0.4439 0.0249 2.4890 41 1 1.6501 -1.7613 3.7307 42 1 1.6377 -0.2311 4.6409 43 1 3.8971 -1.3474 4.6117 44 1 3.9134 0.2822 3.8926 45 1 6.6292 -1.6385 5.1644 46 1 3.9377 0.3009 1.1569 47 1 3.9396 -1.3185 0.4151 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025484413.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:31 Heat of formation + Delta-G solvation = -30.037522 kcal Electronic energy + Delta-G solvation = -29161.718123 eV Core-core repulsion = 25151.680526 eV Total energy + Delta-G solvation = -4010.037597 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.00242 -40.95524 -39.47165 -38.55587 -37.07589 -36.65735 -34.63663 -32.67700 -32.19336 -31.42429 -29.87387 -29.36956 -27.13211 -26.10110 -25.41175 -24.58732 -23.58615 -22.44667 -21.47347 -20.78484 -19.78651 -19.22528 -18.60782 -18.05258 -17.59287 -17.04186 -16.90730 -16.67603 -16.00817 -15.85465 -15.64522 -15.40847 -15.29930 -14.93395 -14.68544 -14.58795 -14.57864 -14.13141 -13.99875 -13.77625 -13.55307 -13.46265 -13.19282 -12.97392 -12.78743 -12.71330 -12.56997 -12.22728 -12.18240 -12.04609 -11.93196 -11.73303 -11.47987 -11.35712 -11.13242 -10.99254 -10.55170 -10.52417 -10.05569 -9.36145 -8.64813 -7.85305 -5.31109 -0.60468 0.04406 1.14143 1.46463 1.48439 1.59025 1.72562 2.17697 2.52143 2.59498 3.00633 3.04734 3.29019 3.53563 3.59669 3.83467 3.97011 4.05699 4.06477 4.10997 4.22624 4.32671 4.39597 4.49354 4.55151 4.68088 4.68733 4.71337 4.81442 4.89562 4.91655 4.93848 4.99413 5.09605 5.15529 5.28559 5.31828 5.33680 5.38706 5.51056 5.56777 5.62212 5.70145 5.81872 6.28112 6.40961 6.45389 6.65395 7.17197 7.18807 7.88782 8.40402 9.20734 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011768 B = 0.003156 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.703205 B = 8869.415411 C =10700.427449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.155 3.845 3 H 0.073 0.927 4 N -0.700 5.700 5 C 0.590 3.410 6 O -0.572 6.572 7 C -0.099 4.099 8 C 0.198 3.802 9 N -0.475 5.475 10 C 0.040 3.960 11 C 0.471 3.529 12 O -0.553 6.553 13 C 0.034 3.966 14 N -0.383 5.383 15 C -0.095 4.095 16 H 0.075 0.925 17 C -0.096 4.096 18 C -0.131 4.131 19 C 0.173 3.827 20 N -0.609 5.609 21 C -0.259 4.259 22 H 0.067 0.933 23 C -0.052 4.052 24 N -0.936 5.936 25 Si 0.965 3.035 26 H -0.265 1.265 27 H -0.295 1.295 28 H -0.289 1.289 29 C 0.156 3.844 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.053 0.947 33 H 0.412 0.588 34 H 0.216 0.784 35 H 0.097 0.903 36 H 0.117 0.883 37 H 0.112 0.888 38 H 0.209 0.791 39 H 0.052 0.948 40 H 0.089 0.911 41 H 0.053 0.947 42 H 0.070 0.930 43 H 0.050 0.950 44 H -0.010 1.010 45 H 0.249 0.751 46 H -0.002 1.002 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.594 4.353 -19.413 23.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.050 3.950 3 H 0.091 0.909 4 N -0.349 5.349 5 C 0.376 3.624 6 O -0.452 6.452 7 C -0.222 4.222 8 C 0.061 3.939 9 N -0.184 5.184 10 C -0.099 4.099 11 C 0.269 3.731 12 O -0.431 6.431 13 C -0.155 4.155 14 N -0.098 5.098 15 C -0.115 4.115 16 H 0.093 0.907 17 C -0.134 4.134 18 C -0.169 4.169 19 C 0.047 3.953 20 N -0.332 5.332 21 C -0.389 4.389 22 H 0.084 0.916 23 C -0.247 4.247 24 N -0.582 5.582 25 Si 0.793 3.207 26 H -0.189 1.189 27 H -0.222 1.222 28 H -0.216 1.216 29 C 0.031 3.969 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.073 0.927 33 H 0.249 0.751 34 H 0.232 0.768 35 H 0.115 0.885 36 H 0.135 0.865 37 H 0.131 0.869 38 H 0.225 0.775 39 H 0.071 0.929 40 H 0.107 0.893 41 H 0.072 0.928 42 H 0.089 0.911 43 H 0.069 0.931 44 H 0.009 0.991 45 H 0.058 0.942 46 H 0.016 0.984 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -12.563 4.591 -19.212 23.409 hybrid contribution 1.356 -0.762 -0.162 1.563 sum -11.207 3.830 -19.374 22.707 Atomic orbital electron populations 1.22130 0.93340 1.02795 1.02778 1.20962 0.95095 0.96259 0.82664 0.90889 1.45878 1.65233 1.14914 1.08845 1.17375 0.76938 0.85423 0.82634 1.90768 1.53348 1.15771 1.85359 1.20311 1.15786 0.91380 0.94770 1.23452 0.85784 1.00809 0.83859 1.45714 1.48752 1.11403 1.12494 1.22761 1.06682 0.98043 0.82415 1.18944 0.80248 0.81858 0.92052 1.90932 1.47696 1.65960 1.38553 1.24969 1.02091 1.02687 0.85752 1.67641 1.03011 1.07795 1.31395 1.21740 0.95924 0.99928 0.93936 0.90672 1.21442 1.00958 0.98185 0.92839 1.22012 0.96548 1.00190 0.98198 1.20634 0.91056 0.94715 0.88901 1.44311 1.49986 1.37806 1.01083 1.19551 1.10991 1.02526 1.05866 0.91564 1.25787 0.98432 1.00469 1.00003 1.70200 1.38789 1.31135 1.18119 0.85246 0.77483 0.80270 0.77706 1.18903 1.22182 1.21621 1.20946 0.92949 0.94809 0.88244 0.91651 0.89879 0.92744 0.75099 0.76786 0.88455 0.86487 0.86917 0.77483 0.92901 0.89277 0.92790 0.91120 0.93135 0.99144 0.94222 0.98356 0.93304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 9.14 71.98 0.66 -2.58 16 2 C 0.15 4.11 2.16 44.99 0.10 4.21 16 3 H 0.07 2.19 7.58 -2.39 -0.02 2.17 16 4 N -0.70 -18.25 4.47 -445.66 -1.99 -20.24 16 5 C 0.59 15.28 7.75 86.70 0.67 15.96 16 6 O -0.57 -16.75 15.94 -4.01 -0.06 -16.81 16 7 C -0.10 -2.12 6.71 41.21 0.28 -1.84 16 8 C 0.20 2.94 9.96 84.18 0.84 3.78 16 9 N -0.48 -6.86 2.97 -671.21 -2.00 -8.86 16 10 C 0.04 0.27 10.64 127.77 1.36 1.63 16 11 C 0.47 9.62 7.46 85.09 0.63 10.25 16 12 O -0.55 -14.29 16.49 -4.86 -0.08 -14.37 16 13 C 0.03 0.68 11.23 85.75 0.96 1.65 16 14 N -0.38 -8.54 9.62 -183.47 -1.77 -10.31 16 15 C -0.09 -2.95 1.98 -10.72 -0.02 -2.98 16 16 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 17 C -0.10 -2.87 4.85 30.63 0.15 -2.73 16 18 C -0.13 -4.69 6.09 30.68 0.19 -4.51 16 19 C 0.17 8.37 5.30 86.36 0.46 8.83 16 20 N -0.61 -30.70 3.00 -699.10 -2.09 -32.80 16 21 C -0.26 -14.35 9.58 84.03 0.81 -13.55 16 22 H 0.07 3.58 7.89 -2.90 -0.02 3.56 16 23 C -0.05 -2.92 4.92 84.86 0.42 -2.51 16 24 N -0.94 -56.17 11.20 21.65 0.24 -55.93 16 25 Si 0.96 45.28 29.59 68.60 2.03 47.31 16 26 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 27 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 28 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 29 C 0.16 6.47 5.55 86.36 0.48 6.95 16 30 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.08 1.55 6.41 -2.39 -0.02 1.53 16 32 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.41 10.63 7.73 -92.71 -0.72 9.91 16 34 H 0.22 2.00 7.58 -2.91 -0.02 1.98 16 35 H 0.10 0.96 6.94 -2.39 -0.02 0.95 16 36 H 0.12 0.18 8.14 -2.38 -0.02 0.16 16 37 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 38 H 0.21 3.27 8.06 -2.91 -0.02 3.24 16 39 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 40 H 0.09 2.06 6.37 -2.39 -0.02 2.04 16 41 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.05 2.79 6.06 -2.39 -0.01 2.77 16 44 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 45 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 46 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 47 H 0.05 2.02 7.44 -2.39 -0.02 2.00 16 Total: -1.00 -74.81 379.69 2.53 -72.28 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 0.27 Total: 17.15 kcal Atomic # 6 Polarization: 14.60 SS G_CDS: 7.97 Total: 22.57 kcal Atomic # 7 Polarization: -120.53 SS G_CDS: -7.60 Total: -128.13 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -0.14 Total: -31.18 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -74.81 2.53 -72.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025484413.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.247 kcal (2) G-P(sol) polarization free energy of solvation -74.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds