Wall clock time and date at job start Tue Mar 31 2020 18:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46945 * 2 1 4 4 C 1.53006 * 109.47234 * 119.99498 * 2 1 3 5 5 C 1.50698 * 109.47184 * 295.00598 * 4 2 1 6 6 O 1.21282 * 120.00025 * 359.97438 * 5 4 2 7 7 N 1.34776 * 120.00035 * 180.02562 * 5 4 2 8 8 C 1.47124 * 121.05273 * 359.71365 * 7 5 4 9 9 C 1.52768 * 108.97481 * 232.16987 * 8 7 5 10 10 O 1.43104 * 109.42524 * 306.12277 * 9 8 7 11 11 C 1.42493 * 113.96870 * 59.82436 * 10 9 8 12 12 C 1.53469 * 113.75822 * 73.17648 * 11 10 9 13 13 N 1.47671 * 85.96925 * 91.28456 * 12 11 10 14 14 C 1.36939 * 134.45490 * 204.30696 * 13 12 11 15 15 H 1.07999 * 120.00346 * 179.97438 * 14 13 12 16 16 C 1.38813 * 120.00217 * 359.97438 * 14 13 12 17 17 N 1.31618 * 119.99853 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 120.00404 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47171 * 59.99850 * 18 16 14 20 20 H 1.48501 * 109.47398 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.47156 * 299.99933 * 18 16 14 22 22 C 1.47670 * 91.08938 * 24.29275 * 13 12 11 23 23 C 1.47340 * 121.05671 * 179.97438 * 7 5 4 24 24 N 1.46495 * 109.47276 * 239.99717 * 2 1 3 25 25 C 1.36882 * 126.39902 * 119.99803 * 24 2 1 26 26 C 1.34663 * 106.82023 * 179.97438 * 25 24 2 27 27 N 1.34125 * 108.01917 * 0.02562 * 26 25 24 28 28 C 1.30497 * 109.25651 * 359.71980 * 27 26 25 29 29 H 1.09003 * 109.47743 * 299.99957 * 1 2 3 30 30 H 1.09002 * 109.47112 * 60.00472 * 1 2 3 31 31 H 1.09006 * 109.47389 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47002 * 55.00002 * 4 2 1 33 33 H 1.08993 * 109.46955 * 175.00440 * 4 2 1 34 34 H 1.08995 * 109.60015 * 352.00495 * 8 7 5 35 35 H 1.09007 * 109.59037 * 112.46194 * 8 7 5 36 36 H 1.09004 * 109.56515 * 186.06490 * 9 8 7 37 37 H 1.09003 * 109.34076 * 66.04083 * 9 8 7 38 38 H 1.09002 * 113.79123 * 205.54361 * 12 11 10 39 39 H 1.08999 * 113.79675 * 337.02248 * 12 11 10 40 40 H 0.97000 * 120.00716 * 180.02562 * 17 16 14 41 41 H 1.09001 * 113.78761 * 221.43964 * 22 13 12 42 42 H 1.08993 * 113.89963 * 89.98147 * 22 13 12 43 43 H 1.08998 * 109.74722 * 251.23738 * 23 7 5 44 44 H 1.09011 * 109.74725 * 11.95764 * 23 7 5 45 45 H 1.08004 * 126.58875 * 0.04069 * 25 24 2 46 46 H 1.07999 * 125.99200 * 180.02562 * 26 25 24 47 47 H 1.08007 * 125.64785 * 180.29109 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0571 2.4766 6 8 1.0115 1.0875 2.3632 7 7 1.9852 -0.3912 3.7002 8 6 2.7444 -1.6406 3.8649 9 6 2.0122 -2.5393 4.8598 10 8 1.7804 -1.8165 6.0729 11 6 0.9941 -0.6402 5.9047 12 6 -0.4923 -0.9217 5.6466 13 7 -0.6558 -0.8355 7.1117 14 6 -1.5645 -1.3348 8.0063 15 1 -1.4588 -1.1210 9.0596 16 6 -2.6215 -2.1158 7.5593 17 7 -2.7506 -2.3760 6.2756 18 14 -3.8605 -2.7975 8.7797 19 1 -4.5206 -1.6753 9.4940 20 1 -4.8840 -3.5922 8.0543 21 1 -3.1623 -3.6665 9.7609 22 6 0.5533 0.0045 7.2255 23 6 1.6080 0.3514 4.9156 24 7 2.0183 -0.6906 -1.1961 25 6 2.8084 -0.1554 -2.1774 26 6 3.0191 -1.1298 -3.0827 27 7 2.3748 -2.2298 -2.6659 28 6 1.7777 -1.9758 -1.5337 29 1 -0.3635 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.6054 -1.7197 1.2953 33 1 3.1262 -0.7993 1.2057 34 1 2.8237 -2.1496 2.9043 35 1 3.7409 -1.4154 4.2452 36 1 2.6188 -3.4200 5.0713 37 1 1.0581 -2.8485 4.4327 38 1 -1.0017 -0.1282 5.0999 39 1 -0.6878 -1.9140 5.2399 40 1 -3.4894 -2.9214 5.9631 41 1 1.1885 -0.2518 8.0734 42 1 0.3569 1.0738 7.1488 43 1 2.4929 0.8110 5.3558 44 1 0.8783 1.1215 4.6651 45 1 3.1904 0.8540 -2.2173 46 1 3.6044 -1.0411 -3.9860 47 1 1.1870 -2.6768 -0.9624 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053452430.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:05 Heat of formation + Delta-G solvation = 60.101301 kcal Electronic energy + Delta-G solvation = -29730.570026 eV Core-core repulsion = 25724.441142 eV Total energy + Delta-G solvation = -4006.128884 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.29598 -40.60547 -39.05517 -36.41553 -35.83516 -34.58424 -32.34747 -31.30265 -30.14236 -29.45266 -28.83326 -27.56396 -25.87499 -25.15604 -23.57430 -23.41417 -21.90252 -21.51611 -20.56433 -19.26951 -18.83760 -17.97810 -16.94948 -16.64411 -16.33151 -16.03504 -15.61581 -15.26450 -14.97642 -14.85738 -14.62598 -14.21019 -14.03934 -14.03146 -13.82078 -13.49880 -13.37807 -13.27732 -13.12979 -12.77885 -12.41322 -12.22380 -12.00782 -11.78314 -11.51285 -11.38960 -11.21525 -10.93255 -10.85520 -10.72235 -10.33502 -10.14713 -10.08320 -9.87683 -9.74161 -9.64025 -9.32920 -8.86461 -8.70249 -8.37814 -6.92838 -5.79247 -3.11554 1.87066 2.36584 2.46979 2.91749 3.02003 3.38539 3.42338 3.43529 3.95305 4.11468 4.24335 4.39955 4.41548 4.54805 4.69941 4.76234 4.80818 4.90744 5.03104 5.06982 5.14182 5.16826 5.20475 5.24549 5.28809 5.43964 5.49322 5.55093 5.60574 5.63476 5.72662 5.86360 5.96570 6.01336 6.13604 6.21524 6.32681 6.43035 6.46961 6.55495 6.92816 6.99211 7.12157 7.24587 7.44613 7.73119 7.90816 7.93793 7.99088 9.00788 9.67595 10.53083 11.37827 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017276 B = 0.002810 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.342289 B = 9963.706920 C =10561.542818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.150 3.850 3 H 0.109 0.891 4 C -0.152 4.152 5 C 0.524 3.476 6 O -0.536 6.536 7 N -0.605 5.605 8 C 0.072 3.928 9 C 0.046 3.954 10 O -0.340 6.340 11 C 0.048 3.952 12 C 0.152 3.848 13 N -0.603 5.603 14 C -0.220 4.220 15 H 0.081 0.919 16 C -0.007 4.007 17 N -0.923 5.923 18 Si 0.913 3.087 19 H -0.285 1.285 20 H -0.290 1.290 21 H -0.284 1.284 22 C 0.136 3.864 23 C 0.099 3.901 24 N -0.453 5.453 25 C -0.056 4.056 26 C -0.034 4.034 27 N -0.498 5.498 28 C 0.183 3.817 29 H 0.101 0.899 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.102 0.898 37 H 0.061 0.939 38 H 0.033 0.967 39 H 0.076 0.924 40 H 0.254 0.746 41 H 0.056 0.944 42 H 0.050 0.950 43 H 0.070 0.930 44 H 0.103 0.897 45 H 0.172 0.828 46 H 0.167 0.833 47 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.128 3.804 -13.179 19.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.047 3.953 3 H 0.127 0.873 4 C -0.193 4.193 5 C 0.311 3.689 6 O -0.414 6.414 7 N -0.339 5.339 8 C -0.051 4.051 9 C -0.032 4.032 10 O -0.258 6.258 11 C 0.007 3.993 12 C 0.027 3.973 13 N -0.329 5.329 14 C -0.347 4.347 15 H 0.098 0.902 16 C -0.204 4.204 17 N -0.570 5.570 18 Si 0.744 3.256 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.210 1.210 22 C 0.009 3.991 23 C -0.024 4.024 24 N -0.136 5.136 25 C -0.189 4.189 26 C -0.182 4.182 27 N -0.216 5.216 28 C -0.100 4.100 29 H 0.119 0.881 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.120 0.880 37 H 0.079 0.921 38 H 0.051 0.949 39 H 0.094 0.906 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.088 0.912 44 H 0.121 0.879 45 H 0.189 0.811 46 H 0.185 0.815 47 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 13.491 3.425 -13.242 19.212 hybrid contribution -0.739 0.395 0.779 1.144 sum 12.753 3.820 -12.463 18.236 Atomic orbital electron populations 1.22315 0.91999 1.03404 1.04879 1.21172 0.96515 0.96706 0.80940 0.87308 1.22032 1.03624 1.01168 0.92430 1.20106 0.79266 0.85549 0.83981 1.90696 1.39985 1.24739 1.85972 1.48129 1.55219 1.24520 1.06013 1.22408 0.95897 0.85543 1.01295 1.22786 1.00061 0.94113 0.86202 1.87950 1.71134 1.37600 1.29139 1.23731 0.92848 0.85875 0.96875 1.22671 0.87126 1.00713 0.86823 1.45767 1.28099 1.56217 1.02806 1.18949 1.02572 1.24787 0.88413 0.90151 1.24765 0.98759 1.00620 0.96234 1.69793 1.32551 1.42374 1.12301 0.86181 0.80827 0.78700 0.79934 1.21169 1.21574 1.21042 1.22487 0.88787 0.94285 0.93493 1.22309 1.00814 0.95490 0.83748 1.45814 1.37897 1.11354 1.18506 1.22766 1.02375 1.01300 0.92460 1.22291 1.04792 0.89713 1.01417 1.70312 1.12535 1.28293 1.10420 1.24925 1.03793 0.85412 0.95828 0.88057 0.91858 0.91929 0.87786 0.88136 0.89233 0.90433 0.87969 0.92053 0.94932 0.90618 0.93649 0.92580 0.93232 0.91169 0.87878 0.81088 0.81549 0.78194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 8.99 37.15 0.33 -1.34 16 2 C 0.15 1.33 2.70 -67.93 -0.18 1.15 16 3 H 0.11 0.98 7.90 -51.93 -0.41 0.57 16 4 C -0.15 -1.30 3.54 -27.88 -0.10 -1.40 16 5 C 0.52 6.42 7.43 -10.99 -0.08 6.34 16 6 O -0.54 -8.16 13.46 5.56 0.07 -8.09 16 7 N -0.61 -7.66 3.03 -172.69 -0.52 -8.19 16 8 C 0.07 0.73 6.47 -3.82 -0.02 0.70 16 9 C 0.05 0.62 6.87 37.04 0.25 0.87 16 10 O -0.34 -6.15 10.52 -35.23 -0.37 -6.52 16 11 C 0.05 0.89 1.21 -90.28 -0.11 0.78 16 12 C 0.15 3.52 6.65 -3.17 -0.02 3.50 16 13 N -0.60 -15.41 3.70 -180.30 -0.67 -16.08 16 14 C -0.22 -6.17 10.70 -15.06 -0.16 -6.33 16 15 H 0.08 2.17 7.83 -52.49 -0.41 1.75 16 16 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 17 N -0.92 -27.18 11.39 55.49 0.63 -26.55 16 18 Si 0.91 22.14 29.55 -169.99 -5.02 17.11 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 C 0.14 2.73 8.34 -3.18 -0.03 2.70 16 23 C 0.10 1.47 5.79 -3.62 -0.02 1.45 16 24 N -0.45 -4.17 2.62 -111.46 -0.29 -4.46 16 25 C -0.06 -0.50 11.54 -16.56 -0.19 -0.69 16 26 C -0.03 -0.35 11.87 -17.82 -0.21 -0.56 16 27 N -0.50 -6.09 11.25 -14.67 -0.17 -6.25 16 28 C 0.18 1.85 11.65 -90.38 -1.05 0.80 16 29 H 0.10 1.24 5.95 -51.93 -0.31 0.93 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.58 7.95 -51.93 -0.41 0.17 16 32 H 0.10 0.78 7.61 -51.93 -0.40 0.38 16 33 H 0.10 0.72 8.00 -51.93 -0.42 0.31 16 34 H 0.09 0.65 6.03 -51.93 -0.31 0.33 16 35 H 0.08 0.70 8.14 -51.92 -0.42 0.28 16 36 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.06 0.93 7.19 -51.93 -0.37 0.56 16 38 H 0.03 0.79 7.94 -51.93 -0.41 0.38 16 39 H 0.08 1.95 6.31 -51.93 -0.33 1.63 16 40 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.05 0.91 8.09 -51.93 -0.42 0.49 16 43 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.10 1.66 6.91 -51.92 -0.36 1.30 16 45 H 0.17 1.06 8.06 -52.48 -0.42 0.64 16 46 H 0.17 1.31 8.06 -52.49 -0.42 0.89 16 47 H 0.20 1.54 8.06 -52.48 -0.42 1.11 16 LS Contribution 376.99 15.07 5.68 5.68 Total: -1.00 -34.98 376.99 -9.42 -44.40 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -7.08 Total: 1.26 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: -1.69 Total: 7.68 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: -1.02 Total: -61.53 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.30 Total: -14.60 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.98 -9.42 -44.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053452430.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.504 kcal (2) G-P(sol) polarization free energy of solvation -34.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds