Wall clock time and date at job start Tue Mar 31 2020 18:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46945 * 2 1 4 4 C 1.53006 * 109.47234 * 119.99498 * 2 1 3 5 5 C 1.50698 * 109.47184 * 295.00598 * 4 2 1 6 6 O 1.21282 * 120.00025 * 359.97438 * 5 4 2 7 7 N 1.34776 * 120.00035 * 180.02562 * 5 4 2 8 8 C 1.47124 * 121.05273 * 359.71365 * 7 5 4 9 9 C 1.52768 * 108.97481 * 232.16987 * 8 7 5 10 10 O 1.43104 * 109.42524 * 306.12277 * 9 8 7 11 11 C 1.42493 * 113.96870 * 59.82436 * 10 9 8 12 12 C 1.53469 * 113.75822 * 73.17648 * 11 10 9 13 13 N 1.47671 * 85.96925 * 91.28456 * 12 11 10 14 14 C 1.36939 * 134.45490 * 204.30696 * 13 12 11 15 15 H 1.07999 * 120.00346 * 179.97438 * 14 13 12 16 16 C 1.38813 * 120.00217 * 359.97438 * 14 13 12 17 17 N 1.31618 * 119.99853 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 120.00404 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47171 * 59.99850 * 18 16 14 20 20 H 1.48501 * 109.47398 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.47156 * 299.99933 * 18 16 14 22 22 C 1.47670 * 91.08938 * 24.29275 * 13 12 11 23 23 C 1.47340 * 121.05671 * 179.97438 * 7 5 4 24 24 N 1.46495 * 109.47276 * 239.99717 * 2 1 3 25 25 C 1.36882 * 126.39902 * 119.99803 * 24 2 1 26 26 C 1.34663 * 106.82023 * 179.97438 * 25 24 2 27 27 N 1.34125 * 108.01917 * 0.02562 * 26 25 24 28 28 C 1.30497 * 109.25651 * 359.71980 * 27 26 25 29 29 H 1.09003 * 109.47743 * 299.99957 * 1 2 3 30 30 H 1.09002 * 109.47112 * 60.00472 * 1 2 3 31 31 H 1.09006 * 109.47389 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47002 * 55.00002 * 4 2 1 33 33 H 1.08993 * 109.46955 * 175.00440 * 4 2 1 34 34 H 1.08995 * 109.60015 * 352.00495 * 8 7 5 35 35 H 1.09007 * 109.59037 * 112.46194 * 8 7 5 36 36 H 1.09004 * 109.56515 * 186.06490 * 9 8 7 37 37 H 1.09003 * 109.34076 * 66.04083 * 9 8 7 38 38 H 1.09002 * 113.79123 * 205.54361 * 12 11 10 39 39 H 1.08999 * 113.79675 * 337.02248 * 12 11 10 40 40 H 0.97000 * 120.00716 * 180.02562 * 17 16 14 41 41 H 1.09001 * 113.78761 * 221.43964 * 22 13 12 42 42 H 1.08993 * 113.89963 * 89.98147 * 22 13 12 43 43 H 1.08998 * 109.74722 * 251.23738 * 23 7 5 44 44 H 1.09011 * 109.74725 * 11.95764 * 23 7 5 45 45 H 1.08004 * 126.58875 * 0.04069 * 25 24 2 46 46 H 1.07999 * 125.99200 * 180.02562 * 26 25 24 47 47 H 1.08007 * 125.64785 * 180.29109 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0571 2.4766 6 8 1.0115 1.0875 2.3632 7 7 1.9852 -0.3912 3.7002 8 6 2.7444 -1.6406 3.8649 9 6 2.0122 -2.5393 4.8598 10 8 1.7804 -1.8165 6.0729 11 6 0.9941 -0.6402 5.9047 12 6 -0.4923 -0.9217 5.6466 13 7 -0.6558 -0.8355 7.1117 14 6 -1.5645 -1.3348 8.0063 15 1 -1.4588 -1.1210 9.0596 16 6 -2.6215 -2.1158 7.5593 17 7 -2.7506 -2.3760 6.2756 18 14 -3.8605 -2.7975 8.7797 19 1 -4.5206 -1.6753 9.4940 20 1 -4.8840 -3.5922 8.0543 21 1 -3.1623 -3.6665 9.7609 22 6 0.5533 0.0045 7.2255 23 6 1.6080 0.3514 4.9156 24 7 2.0183 -0.6906 -1.1961 25 6 2.8084 -0.1554 -2.1774 26 6 3.0191 -1.1298 -3.0827 27 7 2.3748 -2.2298 -2.6659 28 6 1.7777 -1.9758 -1.5337 29 1 -0.3635 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.6054 -1.7197 1.2953 33 1 3.1262 -0.7993 1.2057 34 1 2.8237 -2.1496 2.9043 35 1 3.7409 -1.4154 4.2452 36 1 2.6188 -3.4200 5.0713 37 1 1.0581 -2.8485 4.4327 38 1 -1.0017 -0.1282 5.0999 39 1 -0.6878 -1.9140 5.2399 40 1 -3.4894 -2.9214 5.9631 41 1 1.1885 -0.2518 8.0734 42 1 0.3569 1.0738 7.1488 43 1 2.4929 0.8110 5.3558 44 1 0.8783 1.1215 4.6651 45 1 3.1904 0.8540 -2.2173 46 1 3.6044 -1.0411 -3.9860 47 1 1.1870 -2.6768 -0.9624 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053452430.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:04 Heat of formation + Delta-G solvation = 37.368401 kcal Electronic energy + Delta-G solvation = -29731.555799 eV Core-core repulsion = 25724.441142 eV Total energy + Delta-G solvation = -4007.114657 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.01964 -41.77309 -40.31271 -37.82720 -36.66604 -35.75949 -34.30411 -32.19288 -31.41743 -30.19547 -29.75698 -29.05436 -27.27147 -26.85745 -24.70171 -24.39777 -23.41018 -22.24810 -21.40503 -20.56018 -19.93285 -18.83936 -18.79152 -17.72304 -17.39598 -17.11220 -16.96697 -16.51437 -16.06147 -16.00281 -15.75264 -15.64631 -15.16059 -14.92429 -14.81808 -14.72393 -14.52642 -14.28785 -14.15658 -13.95817 -13.80646 -13.36370 -13.11732 -12.94302 -12.86165 -12.73966 -12.55332 -12.50943 -12.24344 -12.06628 -11.98170 -11.71936 -11.42331 -10.97625 -10.91451 -10.82882 -10.79930 -10.58793 -9.54826 -9.40632 -8.95465 -7.92558 -5.26360 1.16905 1.42946 1.46431 1.48120 1.52629 1.62029 2.05243 2.27203 2.44600 2.65566 3.25488 3.32649 3.38124 3.43679 3.62775 3.69122 3.79461 3.90475 3.97090 4.04288 4.11743 4.15100 4.31078 4.38686 4.45321 4.49434 4.61837 4.62198 4.65097 4.71015 4.71921 4.76833 4.81625 4.87484 4.87734 4.95176 5.12143 5.16824 5.23452 5.30323 5.41909 5.45112 5.87435 5.88124 6.27923 6.29612 6.36351 6.87772 7.04060 7.18766 7.57246 8.50282 9.23674 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017276 B = 0.002810 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.342289 B = 9963.706920 C =10561.542818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.158 3.842 3 H 0.111 0.889 4 C -0.142 4.142 5 C 0.520 3.480 6 O -0.570 6.570 7 N -0.611 5.611 8 C 0.078 3.922 9 C 0.037 3.963 10 O -0.364 6.364 11 C 0.079 3.921 12 C 0.153 3.847 13 N -0.636 5.636 14 C -0.233 4.233 15 H 0.085 0.915 16 C -0.068 4.068 17 N -0.954 5.954 18 Si 0.980 3.020 19 H -0.277 1.277 20 H -0.294 1.294 21 H -0.275 1.275 22 C 0.132 3.868 23 C 0.109 3.891 24 N -0.450 5.450 25 C -0.051 4.051 26 C -0.055 4.055 27 N -0.535 5.535 28 C 0.176 3.824 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.119 0.881 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.102 0.898 36 H 0.131 0.869 37 H 0.034 0.966 38 H 0.012 0.988 39 H 0.041 0.959 40 H 0.247 0.753 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.098 0.902 44 H 0.086 0.914 45 H 0.198 0.802 46 H 0.181 0.819 47 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.441 3.872 -13.417 21.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.055 3.945 3 H 0.129 0.871 4 C -0.182 4.182 5 C 0.310 3.690 6 O -0.450 6.450 7 N -0.344 5.344 8 C -0.043 4.043 9 C -0.039 4.039 10 O -0.282 6.282 11 C 0.037 3.963 12 C 0.027 3.973 13 N -0.363 5.363 14 C -0.362 4.362 15 H 0.102 0.898 16 C -0.261 4.261 17 N -0.603 5.603 18 Si 0.808 3.192 19 H -0.203 1.203 20 H -0.220 1.220 21 H -0.201 1.201 22 C 0.007 3.993 23 C -0.015 4.015 24 N -0.133 5.133 25 C -0.184 4.184 26 C -0.202 4.202 27 N -0.254 5.254 28 C -0.106 4.106 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.137 0.863 33 H 0.145 0.855 34 H 0.144 0.856 35 H 0.120 0.880 36 H 0.149 0.851 37 H 0.052 0.948 38 H 0.029 0.971 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.116 0.884 44 H 0.105 0.895 45 H 0.215 0.785 46 H 0.199 0.801 47 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 15.854 3.502 -13.480 21.103 hybrid contribution -1.444 0.377 0.839 1.712 sum 14.410 3.879 -12.641 19.557 Atomic orbital electron populations 1.22229 0.93188 1.03269 1.03586 1.21039 0.95461 0.96895 0.81084 0.87094 1.22007 1.05246 1.00907 0.90011 1.20720 0.78303 0.85318 0.84690 1.90693 1.41346 1.26503 1.86475 1.48237 1.55473 1.25247 1.05440 1.22557 0.95710 0.83879 1.02201 1.23096 0.99817 0.95522 0.85499 1.87899 1.70497 1.37795 1.32049 1.23183 0.90119 0.86704 0.96308 1.22518 0.91135 0.98028 0.85574 1.46183 1.29093 1.57436 1.03558 1.19374 1.03061 1.24420 0.89304 0.89754 1.25631 1.00893 1.01538 0.98005 1.70000 1.32939 1.43316 1.14052 0.85133 0.78262 0.78042 0.77780 1.20314 1.22027 1.20112 1.22728 0.86764 0.94793 0.95025 1.22013 1.01262 0.94100 0.84084 1.45797 1.37823 1.11112 1.18524 1.23203 1.01420 1.02122 0.91629 1.22666 1.05359 0.89713 1.02494 1.70288 1.13805 1.29663 1.11609 1.25290 1.03689 0.86023 0.95636 0.90563 0.91863 0.91523 0.86280 0.85495 0.85608 0.87956 0.85085 0.94752 0.97076 0.94083 0.94382 0.91766 0.91134 0.88396 0.89538 0.78470 0.80140 0.76475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.18 8.99 71.98 0.65 -2.53 16 2 C 0.16 2.48 2.70 44.99 0.12 2.60 16 3 H 0.11 1.75 7.90 -2.38 -0.02 1.73 16 4 C -0.14 -1.99 3.54 29.85 0.11 -1.88 16 5 C 0.52 11.82 7.43 87.66 0.65 12.47 16 6 O -0.57 -17.10 13.46 -3.04 -0.04 -17.14 16 7 N -0.61 -14.12 3.03 -818.66 -2.48 -16.61 16 8 C 0.08 1.31 6.47 86.18 0.56 1.86 16 9 C 0.04 0.94 6.87 71.91 0.49 1.43 16 10 O -0.36 -12.78 10.52 -148.98 -1.57 -14.35 16 11 C 0.08 2.86 1.21 -10.48 -0.01 2.85 16 12 C 0.15 7.39 6.65 86.31 0.57 7.96 16 13 N -0.64 -33.31 3.70 -729.23 -2.70 -36.01 16 14 C -0.23 -13.36 10.70 84.03 0.90 -12.46 16 15 H 0.08 4.59 7.83 -2.91 -0.02 4.57 16 16 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 17 N -0.95 -58.34 11.39 21.65 0.25 -58.09 16 18 Si 0.98 46.34 29.55 68.60 2.03 48.37 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 20 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 22 C 0.13 5.26 8.34 86.30 0.72 5.98 16 23 C 0.11 3.09 5.79 86.19 0.50 3.59 16 24 N -0.45 -7.22 2.62 -506.55 -1.33 -8.54 16 25 C -0.05 -0.78 11.54 83.08 0.96 0.18 16 26 C -0.06 -1.04 11.87 83.52 0.99 -0.05 16 27 N -0.53 -12.38 11.25 -200.32 -2.25 -14.63 16 28 C 0.18 3.24 11.65 180.26 2.10 5.34 16 29 H 0.08 1.91 5.95 -2.39 -0.01 1.89 16 30 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.07 1.20 7.95 -2.38 -0.02 1.18 16 32 H 0.12 1.38 7.61 -2.39 -0.02 1.36 16 33 H 0.13 1.21 8.00 -2.39 -0.02 1.19 16 34 H 0.13 1.21 6.03 -2.39 -0.01 1.20 16 35 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 36 H 0.13 2.48 8.14 -2.38 -0.02 2.46 16 37 H 0.03 1.04 7.19 -2.39 -0.02 1.03 16 38 H 0.01 0.59 7.94 -2.39 -0.02 0.57 16 39 H 0.04 2.24 6.31 -2.39 -0.02 2.22 16 40 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 41 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 42 H 0.07 2.53 8.09 -2.39 -0.02 2.51 16 43 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.09 2.77 6.91 -2.38 -0.02 2.75 16 45 H 0.20 1.82 8.06 -2.91 -0.02 1.79 16 46 H 0.18 2.58 8.06 -2.91 -0.02 2.56 16 47 H 0.22 2.90 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -79.74 376.99 2.65 -77.10 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 0.97 Total: 16.05 kcal Atomic # 6 Polarization: 14.08 SS G_CDS: 9.77 Total: 23.86 kcal Atomic # 7 Polarization: -125.37 SS G_CDS: -8.51 Total: -133.89 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -1.61 Total: -31.48 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -79.74 2.65 -77.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053452430.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.467 kcal (2) G-P(sol) polarization free energy of solvation -79.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds