Wall clock time and date at job start Tue Mar 31 2020 19:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47165 * 2 1 4 4 N 1.46508 * 109.46864 * 240.00353 * 2 1 3 5 5 C 1.36933 * 120.00140 * 84.99975 * 4 2 1 6 6 H 1.08003 * 119.99906 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00159 * 180.02562 * 5 4 2 8 8 N 1.31610 * 120.00274 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99750 * 359.97438 * 7 5 4 10 10 H 1.48506 * 109.47352 * 89.99925 * 9 7 5 11 11 H 1.48498 * 109.47258 * 210.00048 * 9 7 5 12 12 H 1.48504 * 109.47482 * 330.00085 * 9 7 5 13 13 C 1.53002 * 109.47519 * 120.00437 * 2 1 3 14 14 H 1.08998 * 109.49688 * 60.05720 * 13 2 1 15 15 C 1.53041 * 109.49212 * 299.99742 * 13 2 1 16 16 C 1.53046 * 109.53801 * 178.68515 * 15 13 2 17 17 C 1.53193 * 109.30965 * 61.36120 * 16 15 13 18 18 N 1.46926 * 108.77932 * 305.36608 * 17 16 15 19 19 C 1.34771 * 120.63354 * 233.58782 * 18 17 16 20 20 O 1.21551 * 120.00254 * 181.81619 * 19 18 17 21 21 C 1.47890 * 119.99809 * 1.81034 * 19 18 17 22 22 C 1.41576 * 119.89274 * 151.64564 * 21 19 18 23 23 C 1.36330 * 118.23706 * 179.97438 * 22 21 19 24 24 C 1.41257 * 117.93375 * 0.02562 * 23 22 21 25 25 O 1.21982 * 120.22537 * 179.97438 * 24 23 22 26 26 N 1.34607 * 119.55358 * 0.02562 * 24 23 22 27 27 C 1.46505 * 119.10345 * 179.97438 * 26 24 23 28 28 N 1.28391 * 121.79875 * 0.25319 * 26 24 23 29 29 C 1.46930 * 118.73330 * 53.86202 * 18 17 16 30 30 H 1.08990 * 109.47233 * 59.99957 * 1 2 3 31 31 H 1.09006 * 109.46553 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46554 * 299.99687 * 1 2 3 33 33 H 0.97006 * 119.99462 * 264.99826 * 4 2 1 34 34 H 0.97009 * 120.00246 * 180.02562 * 8 7 5 35 35 H 1.08996 * 109.46079 * 58.66328 * 15 13 2 36 36 H 1.08996 * 109.44875 * 298.69678 * 15 13 2 37 37 H 1.09009 * 109.49378 * 301.41546 * 16 15 13 38 38 H 1.08989 * 109.49839 * 181.31971 * 16 15 13 39 39 H 1.09001 * 109.58390 * 185.57928 * 17 16 15 40 40 H 1.08994 * 109.58559 * 65.15979 * 17 16 15 41 41 H 1.08001 * 120.88005 * 359.97438 * 22 21 19 42 42 H 1.08005 * 121.02954 * 180.02562 * 23 22 21 43 43 H 1.08996 * 109.47377 * 89.99548 * 27 26 24 44 44 H 1.08996 * 109.46686 * 329.99346 * 27 26 24 45 45 H 1.08996 * 109.46803 * 209.99794 * 27 26 24 46 46 H 1.09002 * 109.58495 * 65.93158 * 29 18 17 47 47 H 1.09008 * 109.58007 * 186.35059 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1491 -0.0074 -2.3758 6 1 1.8919 1.0404 -2.4244 7 6 2.6112 -0.6619 -3.5094 8 7 2.7364 -0.0054 -4.6432 9 14 3.0554 -2.4743 -3.4256 10 1 1.8580 -3.2928 -3.7443 11 1 4.1304 -2.7665 -4.4076 12 1 3.5311 -2.8048 -2.0581 13 6 2.0401 -0.7213 1.2492 14 1 1.6779 -1.7494 1.2490 15 6 1.5304 -0.0003 2.4992 16 6 2.0128 -0.7399 3.7492 17 6 3.5445 -0.7370 3.7800 18 7 4.0440 -1.2971 2.5169 19 6 4.9189 -2.3223 2.5188 20 8 5.3502 -2.7552 1.4680 21 6 5.3544 -2.9203 3.7993 22 6 5.7453 -4.2803 3.8461 23 6 6.1412 -4.7968 5.0441 24 6 6.1364 -3.9408 6.1677 25 8 6.4822 -4.3594 7.2600 26 7 5.7466 -2.6603 6.0253 27 6 5.7449 -1.7813 7.1974 28 7 5.3713 -2.1895 4.8913 29 6 3.5763 -0.7144 1.2518 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0278 0.0005 32 1 -0.3632 0.5138 0.8900 33 1 2.2490 -1.6318 -1.1527 34 1 3.0590 -0.4629 -5.4355 35 1 0.4407 0.0204 2.4874 36 1 1.9129 1.0202 2.5108 37 1 1.6514 -1.7681 3.7257 38 1 1.6300 -0.2394 4.6384 39 1 3.8943 -1.3460 4.6135 40 1 3.9056 0.2850 3.8947 41 1 5.7302 -4.8923 2.9564 42 1 6.4490 -5.8284 5.1312 43 1 6.7142 -1.2908 7.2851 44 1 5.5538 -2.3714 8.0936 45 1 4.9652 -1.0280 7.0853 46 1 3.9401 0.3094 1.1645 47 1 3.9473 -1.3087 0.4166 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271678458.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:14 Heat of formation + Delta-G solvation = 27.435409 kcal Electronic energy + Delta-G solvation = -29690.873987 eV Core-core repulsion = 25683.328604 eV Total energy + Delta-G solvation = -4007.545383 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.59850 -40.28039 -38.31146 -37.87473 -35.68318 -35.31133 -33.19465 -31.97598 -31.86384 -30.22707 -29.06416 -28.37535 -26.23177 -25.00755 -24.36996 -23.62687 -22.90086 -21.49784 -20.14618 -19.73578 -18.88572 -17.93866 -17.48809 -17.39313 -17.05899 -16.32639 -15.95238 -15.30347 -14.95729 -14.70283 -14.60438 -14.17548 -14.00032 -13.87651 -13.78086 -13.42520 -13.27538 -13.17569 -13.03545 -12.97057 -12.71662 -12.43430 -12.32907 -11.93765 -11.57318 -11.20388 -11.08488 -11.00106 -10.87799 -10.79793 -10.67150 -10.39982 -10.36264 -10.13082 -9.99392 -9.75784 -9.52947 -8.99884 -8.91816 -8.62816 -7.23974 -5.73291 -3.08857 -0.02608 0.77999 1.63759 2.48320 2.74185 3.07852 3.44027 3.50538 3.51205 3.52697 4.13962 4.25885 4.34711 4.64705 4.68114 4.70193 4.73725 4.85309 4.89522 5.05612 5.06687 5.12027 5.16753 5.24841 5.40773 5.47080 5.51553 5.55677 5.60285 5.67169 5.70997 5.83196 5.87696 6.01827 6.03106 6.12101 6.26573 6.32086 6.37399 6.49627 6.55811 6.81227 7.00148 7.05406 7.25762 7.48402 7.95193 8.02259 8.45680 9.24226 9.97241 10.16377 11.44968 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016519 B = 0.003231 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.647160 B = 8662.979581 C = 9901.507396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.185 3.815 3 H 0.057 0.943 4 N -0.749 5.749 5 C -0.241 4.241 6 H 0.090 0.910 7 C 0.006 3.994 8 N -0.935 5.935 9 Si 0.879 3.121 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.272 1.272 13 C -0.107 4.107 14 H 0.070 0.930 15 C -0.115 4.115 16 C -0.136 4.136 17 C 0.090 3.910 18 N -0.590 5.590 19 C 0.581 3.419 20 O -0.518 6.518 21 C 0.028 3.972 22 C -0.031 4.031 23 C -0.190 4.190 24 C 0.480 3.520 25 O -0.528 6.528 26 N -0.345 5.345 27 C 0.077 3.923 28 N -0.178 5.178 29 C 0.120 3.880 30 H 0.057 0.943 31 H 0.044 0.956 32 H 0.042 0.958 33 H 0.361 0.639 34 H 0.259 0.741 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.109 0.891 40 H 0.073 0.927 41 H 0.163 0.837 42 H 0.170 0.830 43 H 0.085 0.915 44 H 0.102 0.898 45 H 0.098 0.902 46 H 0.075 0.925 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.317 -3.441 25.986 26.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.075 3.925 3 H 0.075 0.925 4 N -0.392 5.392 5 C -0.371 4.371 6 H 0.108 0.892 7 C -0.189 4.189 8 N -0.583 5.583 9 Si 0.709 3.291 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.197 1.197 13 C -0.127 4.127 14 H 0.088 0.912 15 C -0.153 4.153 16 C -0.174 4.174 17 C -0.033 4.033 18 N -0.322 5.322 19 C 0.365 3.635 20 O -0.391 6.391 21 C -0.143 4.143 22 C -0.054 4.054 23 C -0.219 4.219 24 C 0.279 3.721 25 O -0.406 6.406 26 N -0.167 5.167 27 C -0.063 4.063 28 N -0.008 5.008 29 C -0.001 4.001 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.194 0.806 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.126 0.874 40 H 0.092 0.908 41 H 0.181 0.819 42 H 0.187 0.813 43 H 0.103 0.897 44 H 0.121 0.879 45 H 0.117 0.883 46 H 0.093 0.907 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.621 -2.886 26.214 26.502 hybrid contribution 0.437 -2.049 -0.280 2.113 sum 3.058 -4.935 25.934 26.576 Atomic orbital electron populations 1.22450 0.98748 1.00841 1.00472 1.20150 0.92042 0.95589 0.84682 0.92540 1.42827 1.79681 1.09524 1.07153 1.19026 1.37019 0.95524 0.85551 0.89246 1.24639 1.01340 0.97403 0.95559 1.69696 1.52728 1.35589 1.00251 0.86628 0.78046 0.86908 0.77548 1.21283 1.21792 1.19743 1.21899 0.94403 1.00608 0.95765 0.91155 1.21633 1.01204 0.99214 0.93245 1.21968 0.95176 1.01365 0.98882 1.22437 0.94212 1.00172 0.86513 1.48063 1.42937 1.32402 1.08757 1.17301 0.79945 0.80083 0.86211 1.90899 1.55938 1.61530 1.30744 1.21901 1.06469 0.93755 0.92175 1.22250 0.89886 0.93500 0.99794 1.22699 1.05412 1.02467 0.91345 1.18091 0.80425 0.82193 0.91406 1.90977 1.48526 1.73930 1.27195 1.46889 1.50946 1.11545 1.07287 1.22264 1.04857 0.94248 0.84949 1.71322 1.06973 1.30183 0.92298 1.21930 0.94065 0.99402 0.84704 0.92347 0.93715 0.93939 0.80603 0.93115 0.91025 0.91527 0.91859 0.90876 0.87424 0.90831 0.81898 0.81273 0.89673 0.87947 0.88323 0.90687 0.87803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.69 9.14 37.16 0.34 -2.35 16 2 C 0.19 3.27 2.47 -67.92 -0.17 3.11 16 3 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 4 N -0.75 -17.03 4.33 -53.42 -0.23 -17.26 16 5 C -0.24 -6.64 10.41 -15.06 -0.16 -6.80 16 6 H 0.09 2.63 8.06 -52.48 -0.42 2.21 16 7 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 8 N -0.93 -29.38 13.97 55.49 0.78 -28.61 16 9 Si 0.88 22.50 27.73 -169.99 -4.71 17.78 16 10 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 11 H -0.29 -7.63 7.11 56.52 0.40 -7.22 16 12 H -0.27 -6.69 6.52 56.52 0.37 -6.32 16 13 C -0.11 -1.52 1.99 -90.28 -0.18 -1.70 16 14 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 15 C -0.11 -1.22 4.85 -26.69 -0.13 -1.35 16 16 C -0.14 -1.19 6.08 -26.61 -0.16 -1.35 16 17 C 0.09 0.84 6.00 -3.71 -0.02 0.82 16 18 N -0.59 -7.59 2.97 -173.60 -0.51 -8.10 16 19 C 0.58 8.13 7.57 -12.31 -0.09 8.04 16 20 O -0.52 -9.24 16.13 5.32 0.09 -9.15 16 21 C 0.03 0.31 6.42 -82.83 -0.53 -0.23 16 22 C -0.03 -0.29 9.69 -39.00 -0.38 -0.67 16 23 C -0.19 -1.68 10.11 -39.12 -0.40 -2.07 16 24 C 0.48 5.06 7.47 -15.19 -0.11 4.95 16 25 O -0.53 -6.89 16.62 4.93 0.08 -6.81 16 26 N -0.35 -3.06 3.62 -70.16 -0.25 -3.32 16 27 C 0.08 0.41 10.58 59.85 0.63 1.04 16 28 N -0.18 -1.68 7.19 33.42 0.24 -1.44 16 29 C 0.12 1.84 5.50 -3.49 -0.02 1.82 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.04 0.56 6.40 -51.93 -0.33 0.22 16 33 H 0.36 8.32 5.50 -40.82 -0.22 8.10 16 34 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 35 H 0.07 0.73 6.36 -51.93 -0.33 0.40 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.11 0.92 4.17 -84.41 -0.35 0.57 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.16 1.35 7.95 -52.49 -0.42 0.93 16 42 H 0.17 1.13 8.06 -52.48 -0.42 0.71 16 43 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.10 0.54 7.36 -51.93 -0.38 0.16 16 45 H 0.10 0.31 8.13 -51.93 -0.42 -0.11 16 46 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 47 H 0.10 1.98 6.55 -51.92 -0.34 1.64 16 LS Contribution 375.27 15.07 5.66 5.66 Total: -1.00 -35.10 375.27 -7.39 -42.48 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -7.04 Total: 5.42 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -1.47 Total: 3.34 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: 0.02 Total: -58.73 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: 0.17 Total: -15.96 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.71 Total: 17.78 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.10 -7.39 -42.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271678458.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.918 kcal (2) G-P(sol) polarization free energy of solvation -35.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds