Wall clock time and date at job start Tue Mar 31 2020 19:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47165 * 2 1 4 4 N 1.46508 * 109.46864 * 240.00353 * 2 1 3 5 5 C 1.36933 * 120.00140 * 84.99975 * 4 2 1 6 6 H 1.08003 * 119.99906 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00159 * 180.02562 * 5 4 2 8 8 N 1.31610 * 120.00274 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99750 * 359.97438 * 7 5 4 10 10 H 1.48506 * 109.47352 * 89.99925 * 9 7 5 11 11 H 1.48498 * 109.47258 * 210.00048 * 9 7 5 12 12 H 1.48504 * 109.47482 * 330.00085 * 9 7 5 13 13 C 1.53002 * 109.47519 * 120.00437 * 2 1 3 14 14 H 1.08998 * 109.49688 * 60.05720 * 13 2 1 15 15 C 1.53041 * 109.49212 * 299.99742 * 13 2 1 16 16 C 1.53046 * 109.53801 * 178.68515 * 15 13 2 17 17 C 1.53193 * 109.30965 * 61.36120 * 16 15 13 18 18 N 1.46926 * 108.77932 * 305.36608 * 17 16 15 19 19 C 1.34771 * 120.63354 * 233.58782 * 18 17 16 20 20 O 1.21551 * 120.00254 * 181.81619 * 19 18 17 21 21 C 1.47890 * 119.99809 * 1.81034 * 19 18 17 22 22 C 1.41576 * 119.89274 * 151.64564 * 21 19 18 23 23 C 1.36330 * 118.23706 * 179.97438 * 22 21 19 24 24 C 1.41257 * 117.93375 * 0.02562 * 23 22 21 25 25 O 1.21982 * 120.22537 * 179.97438 * 24 23 22 26 26 N 1.34607 * 119.55358 * 0.02562 * 24 23 22 27 27 C 1.46505 * 119.10345 * 179.97438 * 26 24 23 28 28 N 1.28391 * 121.79875 * 0.25319 * 26 24 23 29 29 C 1.46930 * 118.73330 * 53.86202 * 18 17 16 30 30 H 1.08990 * 109.47233 * 59.99957 * 1 2 3 31 31 H 1.09006 * 109.46553 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46554 * 299.99687 * 1 2 3 33 33 H 0.97006 * 119.99462 * 264.99826 * 4 2 1 34 34 H 0.97009 * 120.00246 * 180.02562 * 8 7 5 35 35 H 1.08996 * 109.46079 * 58.66328 * 15 13 2 36 36 H 1.08996 * 109.44875 * 298.69678 * 15 13 2 37 37 H 1.09009 * 109.49378 * 301.41546 * 16 15 13 38 38 H 1.08989 * 109.49839 * 181.31971 * 16 15 13 39 39 H 1.09001 * 109.58390 * 185.57928 * 17 16 15 40 40 H 1.08994 * 109.58559 * 65.15979 * 17 16 15 41 41 H 1.08001 * 120.88005 * 359.97438 * 22 21 19 42 42 H 1.08005 * 121.02954 * 180.02562 * 23 22 21 43 43 H 1.08996 * 109.47377 * 89.99548 * 27 26 24 44 44 H 1.08996 * 109.46686 * 329.99346 * 27 26 24 45 45 H 1.08996 * 109.46803 * 209.99794 * 27 26 24 46 46 H 1.09002 * 109.58495 * 65.93158 * 29 18 17 47 47 H 1.09008 * 109.58007 * 186.35059 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1491 -0.0074 -2.3758 6 1 1.8919 1.0404 -2.4244 7 6 2.6112 -0.6619 -3.5094 8 7 2.7364 -0.0054 -4.6432 9 14 3.0554 -2.4743 -3.4256 10 1 1.8580 -3.2928 -3.7443 11 1 4.1304 -2.7665 -4.4076 12 1 3.5311 -2.8048 -2.0581 13 6 2.0401 -0.7213 1.2492 14 1 1.6779 -1.7494 1.2490 15 6 1.5304 -0.0003 2.4992 16 6 2.0128 -0.7399 3.7492 17 6 3.5445 -0.7370 3.7800 18 7 4.0440 -1.2971 2.5169 19 6 4.9189 -2.3223 2.5188 20 8 5.3502 -2.7552 1.4680 21 6 5.3544 -2.9203 3.7993 22 6 5.7453 -4.2803 3.8461 23 6 6.1412 -4.7968 5.0441 24 6 6.1364 -3.9408 6.1677 25 8 6.4822 -4.3594 7.2600 26 7 5.7466 -2.6603 6.0253 27 6 5.7449 -1.7813 7.1974 28 7 5.3713 -2.1895 4.8913 29 6 3.5763 -0.7144 1.2518 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0278 0.0005 32 1 -0.3632 0.5138 0.8900 33 1 2.2490 -1.6318 -1.1527 34 1 3.0590 -0.4629 -5.4355 35 1 0.4407 0.0204 2.4874 36 1 1.9129 1.0202 2.5108 37 1 1.6514 -1.7681 3.7257 38 1 1.6300 -0.2394 4.6384 39 1 3.8943 -1.3460 4.6135 40 1 3.9056 0.2850 3.8947 41 1 5.7302 -4.8923 2.9564 42 1 6.4490 -5.8284 5.1312 43 1 6.7142 -1.2908 7.2851 44 1 5.5538 -2.3714 8.0936 45 1 4.9652 -1.0280 7.0853 46 1 3.9401 0.3094 1.1645 47 1 3.9473 -1.3087 0.4166 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271678458.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:13 Heat of formation + Delta-G solvation = 3.026390 kcal Electronic energy + Delta-G solvation = -29691.932442 eV Core-core repulsion = 25683.328604 eV Total energy + Delta-G solvation = -4008.603838 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.37395 -41.31818 -39.34858 -38.88449 -37.10916 -36.04281 -34.72313 -33.38076 -32.77701 -31.69970 -30.21562 -29.30758 -27.12340 -26.16077 -25.36679 -24.84480 -24.10642 -22.57624 -21.49029 -20.88445 -19.72214 -19.50626 -18.66023 -18.18412 -17.87746 -17.28072 -16.87782 -16.70789 -16.38832 -15.89075 -15.66843 -15.48488 -14.99868 -14.82195 -14.60247 -14.56889 -14.36316 -14.29951 -14.21466 -13.96231 -13.73331 -13.60362 -13.38762 -13.21540 -12.89651 -12.81373 -12.52498 -12.30965 -12.15447 -11.87958 -11.81727 -11.70615 -11.55038 -11.46528 -11.34519 -11.23053 -10.99030 -10.70551 -9.84297 -9.62746 -9.26670 -8.00198 -5.30738 -0.77194 -0.06677 0.93723 1.36726 1.41242 1.46617 1.52371 1.77620 2.24566 2.49157 2.69674 3.32748 3.33700 3.49053 3.55428 3.63410 3.84158 3.94076 4.07862 4.13725 4.29594 4.31746 4.36450 4.41378 4.46706 4.52556 4.62135 4.70861 4.72184 4.73955 4.78820 4.83690 4.85963 4.93032 5.02493 5.04222 5.08177 5.17156 5.29467 5.37291 5.47496 5.53830 5.64816 5.82230 6.21860 6.25215 6.29903 6.69400 6.91421 7.11711 7.90104 8.06121 9.21704 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016519 B = 0.003231 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.647160 B = 8662.979581 C = 9901.507396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.177 3.823 3 H 0.050 0.950 4 N -0.753 5.753 5 C -0.215 4.215 6 H 0.062 0.938 7 C -0.062 4.062 8 N -0.985 5.985 9 Si 0.942 3.058 10 H -0.279 1.279 11 H -0.300 1.300 12 H -0.261 1.261 13 C -0.094 4.094 14 H 0.064 0.936 15 C -0.110 4.110 16 C -0.128 4.128 17 C 0.086 3.914 18 N -0.587 5.587 19 C 0.577 3.423 20 O -0.567 6.567 21 C 0.016 3.984 22 C -0.031 4.031 23 C -0.183 4.183 24 C 0.472 3.528 25 O -0.557 6.557 26 N -0.337 5.337 27 C 0.066 3.934 28 N -0.162 5.162 29 C 0.123 3.877 30 H 0.030 0.970 31 H 0.045 0.955 32 H 0.082 0.918 33 H 0.360 0.640 34 H 0.255 0.745 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.059 0.941 38 H 0.108 0.892 39 H 0.120 0.880 40 H 0.090 0.910 41 H 0.170 0.830 42 H 0.190 0.810 43 H 0.096 0.904 44 H 0.103 0.897 45 H 0.126 0.874 46 H 0.074 0.926 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.507 -3.671 29.764 30.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.069 3.931 3 H 0.068 0.932 4 N -0.396 5.396 5 C -0.346 4.346 6 H 0.080 0.920 7 C -0.253 4.253 8 N -0.636 5.636 9 Si 0.771 3.229 10 H -0.206 1.206 11 H -0.227 1.227 12 H -0.186 1.186 13 C -0.114 4.114 14 H 0.082 0.918 15 C -0.148 4.148 16 C -0.166 4.166 17 C -0.035 4.035 18 N -0.317 5.317 19 C 0.363 3.637 20 O -0.444 6.444 21 C -0.154 4.154 22 C -0.055 4.055 23 C -0.213 4.213 24 C 0.272 3.728 25 O -0.438 6.438 26 N -0.159 5.159 27 C -0.072 4.072 28 N 0.007 4.993 29 C 0.001 3.999 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.101 0.899 33 H 0.193 0.807 34 H 0.064 0.936 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.126 0.874 39 H 0.137 0.863 40 H 0.108 0.892 41 H 0.188 0.812 42 H 0.207 0.793 43 H 0.115 0.885 44 H 0.122 0.878 45 H 0.144 0.856 46 H 0.092 0.908 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.766 -3.089 30.082 30.292 hybrid contribution 0.667 -1.818 -1.323 2.345 sum 2.434 -4.907 28.759 29.276 Atomic orbital electron populations 1.22313 0.96992 1.01145 1.01113 1.20451 0.93147 0.95224 0.84290 0.93222 1.42910 1.79858 1.09519 1.07332 1.19020 1.34028 0.94476 0.87050 0.91957 1.25328 1.02927 1.01540 0.95489 1.69853 1.55340 1.37340 1.01074 0.85589 0.77545 0.82129 0.77619 1.20553 1.22713 1.18569 1.21749 0.93447 1.00303 0.95875 0.91761 1.21630 1.01920 0.99376 0.91868 1.21955 0.94247 1.01307 0.99118 1.22729 0.94959 1.00997 0.84855 1.48132 1.42441 1.32004 1.09154 1.17667 0.79517 0.79864 0.86662 1.90868 1.57714 1.63070 1.32738 1.21485 1.08005 0.94416 0.91466 1.22276 0.89906 0.92952 1.00317 1.22875 1.04686 1.03260 0.90464 1.18349 0.80253 0.82849 0.91338 1.90968 1.50040 1.74557 1.28197 1.47163 1.49333 1.11676 1.07685 1.22625 1.06631 0.94401 0.83538 1.71295 1.06353 1.29488 0.92174 1.21663 0.94840 0.98526 0.84855 0.95088 0.93551 0.89910 0.80682 0.93577 0.89727 0.90566 0.92252 0.87401 0.86329 0.89202 0.81228 0.79293 0.88508 0.87828 0.85553 0.90776 0.92040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.80 9.14 71.98 0.66 -4.14 16 2 C 0.18 6.10 2.47 44.99 0.11 6.21 16 3 H 0.05 1.79 8.08 -2.39 -0.02 1.77 16 4 N -0.75 -34.50 4.33 -322.92 -1.40 -35.89 16 5 C -0.21 -12.11 10.41 84.03 0.87 -11.23 16 6 H 0.06 3.81 8.06 -2.91 -0.02 3.79 16 7 C -0.06 -3.69 5.50 84.86 0.47 -3.23 16 8 N -0.98 -64.09 13.97 21.65 0.30 -63.79 16 9 Si 0.94 47.86 27.73 68.60 1.90 49.77 16 10 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 11 H -0.30 -15.57 7.11 99.48 0.71 -14.86 16 12 H -0.26 -12.59 6.52 99.48 0.65 -11.94 16 13 C -0.09 -2.51 1.99 -10.57 -0.02 -2.53 16 14 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 15 C -0.11 -1.91 4.85 30.62 0.15 -1.76 16 16 C -0.13 -1.66 6.08 30.67 0.19 -1.47 16 17 C 0.09 1.30 6.00 86.36 0.52 1.82 16 18 N -0.59 -14.25 2.97 -821.42 -2.44 -16.69 16 19 C 0.58 15.86 7.57 86.80 0.66 16.51 16 20 O -0.57 -20.70 16.13 -3.88 -0.06 -20.76 16 21 C 0.02 0.32 6.42 42.59 0.27 0.59 16 22 C -0.03 -0.55 9.69 22.65 0.22 -0.33 16 23 C -0.18 -2.92 10.11 22.57 0.23 -2.69 16 24 C 0.47 9.02 7.47 85.01 0.63 9.66 16 25 O -0.56 -13.65 16.62 -5.26 -0.09 -13.74 16 26 N -0.34 -5.09 3.62 -494.07 -1.79 -6.88 16 27 C 0.07 0.50 10.58 127.77 1.35 1.85 16 28 N -0.16 -2.64 7.19 -48.19 -0.35 -2.99 16 29 C 0.12 3.72 5.50 86.50 0.48 4.20 16 30 H 0.03 1.10 8.14 -2.39 -0.02 1.09 16 31 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 32 H 0.08 1.88 6.40 -2.39 -0.02 1.86 16 33 H 0.36 16.63 5.50 -92.70 -0.51 16.12 16 34 H 0.26 15.97 8.31 -92.70 -0.77 15.20 16 35 H 0.08 1.30 6.36 -2.39 -0.02 1.29 16 36 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 38 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.12 1.57 4.17 -44.40 -0.19 1.38 16 40 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.17 2.69 7.95 -2.91 -0.02 2.67 16 42 H 0.19 2.14 8.06 -2.91 -0.02 2.12 16 43 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.10 0.83 7.36 -2.39 -0.02 0.81 16 45 H 0.13 0.25 8.13 -2.39 -0.02 0.23 16 46 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 47 H 0.06 2.40 6.55 -2.38 -0.02 2.39 16 Total: -1.00 -79.92 375.27 3.12 -76.80 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 0.25 Total: 20.72 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: 6.78 Total: 13.46 kcal Atomic # 7 Polarization: -120.57 SS G_CDS: -5.67 Total: -126.24 kcal Atomic # 8 Polarization: -34.35 SS G_CDS: -0.15 Total: -34.50 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 1.90 Total: 49.77 kcal Total: -79.92 3.12 -76.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271678458.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.826 kcal (2) G-P(sol) polarization free energy of solvation -79.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds