Wall clock time and date at job start Tue Mar 31 2020 19:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47376 * 2 1 4 4 N 1.46499 * 109.47285 * 239.99566 * 2 1 3 5 5 C 1.36942 * 119.99614 * 85.00674 * 4 2 1 6 6 H 1.07998 * 120.00092 * 359.97438 * 5 4 2 7 7 C 1.38807 * 119.99541 * 180.02562 * 5 4 2 8 8 N 1.31619 * 120.00813 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99716 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47218 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47263 * 119.99955 * 9 7 5 12 12 H 1.48505 * 109.46840 * 239.99894 * 9 7 5 13 13 C 1.53002 * 109.46592 * 119.99952 * 2 1 3 14 14 H 1.09003 * 109.51281 * 299.89433 * 13 2 1 15 15 C 1.53301 * 109.50950 * 179.74629 * 13 2 1 16 16 N 1.47155 * 108.38461 * 187.77201 * 15 13 2 17 17 C 1.34773 * 120.98352 * 230.55818 * 16 15 13 18 18 O 1.21603 * 119.99939 * 355.72193 * 17 16 15 19 19 C 1.47428 * 120.00230 * 175.71573 * 17 16 15 20 20 C 1.38047 * 126.41193 * 48.51036 * 19 17 16 21 21 N 1.34254 * 107.42028 * 179.97438 * 20 19 17 22 22 H 0.96996 * 125.75983 * 180.02562 * 21 20 19 23 23 N 1.39936 * 108.49069 * 359.97438 * 21 20 19 24 24 C 1.30448 * 108.89514 * 359.73511 * 23 21 20 25 25 C 1.50701 * 125.98760 * 180.26224 * 24 23 21 26 26 C 1.52998 * 117.50210 * 8.79592 * 25 24 23 27 27 C 1.53001 * 117.49890 * 300.17162 * 25 24 23 28 28 C 1.47151 * 118.03367 * 50.53682 * 16 15 13 29 29 C 1.53295 * 108.38308 * 309.46292 * 28 16 15 30 30 O 1.42954 * 109.51460 * 60.00362 * 13 2 1 31 31 H 1.09006 * 109.46871 * 60.00346 * 1 2 3 32 32 H 1.08999 * 109.47176 * 300.00283 * 1 2 3 33 33 H 1.09001 * 109.47376 * 180.02562 * 1 2 3 34 34 H 0.96998 * 120.00164 * 264.99669 * 4 2 1 35 35 H 0.96996 * 120.00987 * 180.02562 * 8 7 5 36 36 H 1.08991 * 109.68271 * 307.49974 * 15 13 2 37 37 H 1.09007 * 109.68318 * 68.05271 * 15 13 2 38 38 H 1.08004 * 126.29121 * 0.02562 * 20 19 17 39 39 H 1.09005 * 115.54958 * 154.50611 * 25 24 23 40 40 H 1.09003 * 117.49678 * 0.02562 * 26 25 24 41 41 H 1.08998 * 117.49891 * 145.01732 * 26 25 24 42 42 H 1.08998 * 117.50194 * 214.98003 * 27 25 24 43 43 H 1.09000 * 117.50136 * 0.02562 * 27 25 24 44 44 H 1.09000 * 109.68076 * 189.74197 * 28 16 15 45 45 H 1.08992 * 109.71652 * 69.20529 * 28 16 15 46 46 H 1.08997 * 109.51793 * 292.37708 * 29 28 16 47 47 H 1.09004 * 109.51373 * 172.22850 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1493 -0.0075 -2.3757 6 1 1.8921 1.0403 -2.4243 7 6 2.6115 -0.6621 -3.5091 8 7 2.9244 -1.9392 -3.4501 9 14 2.7894 0.2696 -5.1184 10 1 2.3746 1.6818 -4.9213 11 1 4.2061 0.2266 -5.5614 12 1 1.9282 -0.3590 -6.1521 13 6 2.0399 -0.7213 1.2493 14 1 1.6784 -0.2068 2.1397 15 6 3.5728 -0.7274 1.2471 16 7 4.0351 -1.5830 2.3515 17 6 4.9536 -1.1415 3.2336 18 8 5.4702 -0.0515 3.0791 19 6 5.3318 -1.9798 4.3858 20 6 5.6755 -3.3163 4.3490 21 7 5.9492 -3.6956 5.6074 22 1 6.2202 -4.5846 5.8852 23 7 5.7789 -2.5920 6.4507 24 6 5.4173 -1.5641 5.7334 25 6 5.1360 -0.1774 6.2519 26 6 5.4809 0.1138 7.7138 27 6 4.0185 -0.0228 7.2855 28 6 3.4646 -2.9346 2.4647 29 6 1.9370 -2.8209 2.4076 30 8 1.5639 -2.0692 1.2502 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 0.5139 0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 2.2491 -1.6318 -1.1525 35 1 3.2478 -2.3965 -4.2420 36 1 3.9370 -1.1230 0.2991 37 1 3.9443 0.2876 1.3889 38 1 5.7174 -3.9416 3.4694 39 1 5.2710 0.6300 5.5322 40 1 5.9118 -0.6976 8.3005 41 1 5.8433 1.1128 7.9561 42 1 3.4186 0.8864 7.2460 43 1 3.4870 -0.9242 7.5908 44 1 3.7643 -3.3814 3.4128 45 1 3.8178 -3.5531 1.6397 46 1 1.5758 -2.3145 3.3026 47 1 1.4995 -3.8177 2.3509 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485646836.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:12 Heat of formation + Delta-G solvation = 44.903068 kcal Electronic energy + Delta-G solvation = -29673.723067 eV Core-core repulsion = 25666.935138 eV Total energy + Delta-G solvation = -4006.787929 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.77993 -39.86589 -38.08240 -37.28503 -35.45201 -34.42393 -32.31162 -31.70231 -30.95423 -29.91776 -28.36564 -27.49789 -24.45272 -24.18048 -23.51187 -23.34374 -22.56773 -21.52706 -19.92498 -19.67064 -19.39924 -17.97321 -17.27098 -16.82711 -16.19744 -15.84627 -15.67726 -15.35859 -15.05417 -14.89374 -14.60702 -14.46094 -14.20517 -13.77433 -13.47624 -13.29715 -13.14979 -12.74862 -12.36837 -12.12971 -11.92400 -11.81986 -11.75310 -11.42305 -11.32266 -11.21220 -11.13917 -10.82662 -10.76135 -10.57731 -10.44628 -10.24625 -9.99867 -9.84007 -9.70607 -9.54471 -9.53239 -8.95445 -8.89778 -8.29083 -6.89545 -5.71620 -2.99662 1.33011 1.94134 2.37766 2.90961 3.17480 3.46602 3.52750 3.54433 3.74316 4.01944 4.08348 4.35175 4.63238 4.64730 4.70651 4.79657 4.86511 4.94119 5.05310 5.18000 5.19659 5.36191 5.39874 5.43944 5.44025 5.53063 5.62775 5.64364 5.73237 5.81999 5.90465 5.91969 5.97493 6.04261 6.12408 6.25200 6.41310 6.45584 6.62954 6.70230 6.79769 6.81593 7.16454 7.25108 7.49842 7.51919 7.75630 8.28780 8.46826 9.59299 10.16487 10.53820 11.50765 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017483 B = 0.002900 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.191885 B = 9652.440768 C = 9826.489487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.182 3.818 3 H 0.060 0.940 4 N -0.717 5.717 5 C -0.236 4.236 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.931 5.931 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.293 1.293 13 C 0.078 3.922 14 H 0.055 0.945 15 C 0.088 3.912 16 N -0.606 5.606 17 C 0.594 3.406 18 O -0.537 6.537 19 C -0.269 4.269 20 C 0.097 3.903 21 N -0.462 5.462 22 H 0.444 0.556 23 N -0.296 5.296 24 C 0.160 3.840 25 C -0.089 4.089 26 C -0.163 4.163 27 C -0.161 4.161 28 C 0.067 3.933 29 C 0.049 3.951 30 O -0.359 6.359 31 H 0.053 0.947 32 H 0.032 0.968 33 H 0.055 0.945 34 H 0.390 0.610 35 H 0.253 0.747 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.189 0.811 39 H 0.134 0.866 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.095 0.905 44 H 0.089 0.911 45 H 0.081 0.919 46 H 0.048 0.952 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.660 -4.577 22.420 23.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.072 3.928 3 H 0.078 0.922 4 N -0.360 5.360 5 C -0.367 4.367 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.579 5.579 9 Si 0.735 3.265 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.220 1.220 13 C 0.019 3.981 14 H 0.073 0.927 15 C -0.034 4.034 16 N -0.339 5.339 17 C 0.381 3.619 18 O -0.414 6.414 19 C -0.284 4.284 20 C -0.055 4.055 21 N -0.167 5.167 22 H 0.289 0.711 23 N -0.118 5.118 24 C -0.007 4.007 25 C -0.109 4.109 26 C -0.200 4.200 27 C -0.199 4.199 28 C -0.057 4.057 29 C -0.029 4.029 30 O -0.277 6.277 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.225 0.775 35 H 0.063 0.937 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.206 0.794 39 H 0.152 0.848 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.113 0.887 44 H 0.107 0.893 45 H 0.099 0.901 46 H 0.067 0.933 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.121 -4.361 23.193 23.805 hybrid contribution 0.305 -0.297 -1.550 1.608 sum 3.426 -4.658 21.642 22.401 Atomic orbital electron populations 1.22349 0.98558 1.01528 0.99610 1.20261 0.92720 0.94671 0.85190 0.92208 1.42393 1.77642 1.11013 1.04918 1.19293 1.36232 0.93833 0.87391 0.91161 1.24706 1.02326 0.95920 0.97917 1.69677 1.51008 1.08607 1.28618 0.86165 0.77224 0.78846 0.84249 1.20580 1.21988 1.22025 1.22922 0.92279 0.83363 0.99527 0.92736 1.22443 0.94784 0.96516 0.89641 1.48080 1.41266 1.15565 1.29030 1.17277 0.78638 0.85351 0.80590 1.90769 1.53454 1.22172 1.74971 1.20165 1.19323 0.94051 0.94873 1.23161 0.97322 0.95293 0.89700 1.46023 1.53849 1.12085 1.04773 0.71112 1.77054 1.24793 0.93296 1.16688 1.21326 0.95501 0.93905 0.90004 1.20482 1.05585 0.91595 0.93288 1.22986 0.98157 1.03324 0.95579 1.23008 0.91625 1.03638 1.01653 1.22612 0.95551 0.84460 1.03041 1.22861 0.93045 0.97442 0.89587 1.88102 1.75132 1.23737 1.40686 0.92780 0.94868 0.92579 0.77532 0.93706 0.88441 0.88542 0.79444 0.84804 0.88038 0.88150 0.87945 0.88651 0.89312 0.90065 0.93328 0.88142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 9.35 37.16 0.35 -2.61 16 2 C 0.18 3.60 2.74 -67.93 -0.19 3.41 16 3 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 4 N -0.72 -17.57 4.29 -53.43 -0.23 -17.80 16 5 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 6 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -27.81 13.06 55.49 0.72 -27.08 16 9 Si 0.90 22.39 29.55 -169.99 -5.02 17.36 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 12 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 13 C 0.08 1.33 2.53 -26.57 -0.07 1.26 16 14 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 15 C 0.09 1.53 5.85 -3.53 -0.02 1.51 16 16 N -0.61 -8.91 3.02 -173.54 -0.52 -9.44 16 17 C 0.59 9.17 7.39 -12.52 -0.09 9.07 16 18 O -0.54 -10.13 15.87 5.27 0.08 -10.04 16 19 C -0.27 -3.36 5.19 -105.07 -0.54 -3.90 16 20 C 0.10 0.84 9.65 -16.56 -0.16 0.68 16 21 N -0.46 -3.63 7.29 30.85 0.22 -3.41 16 22 H 0.44 1.80 8.96 -182.73 -1.64 0.16 16 23 N -0.30 -3.29 12.22 33.89 0.41 -2.87 16 24 C 0.16 1.97 6.80 -82.02 -0.56 1.41 16 25 C -0.09 -1.02 6.04 -91.77 -0.55 -1.57 16 26 C -0.16 -1.48 10.14 -26.73 -0.27 -1.75 16 27 C -0.16 -1.47 10.23 -26.73 -0.27 -1.74 16 28 C 0.07 0.77 5.98 -3.53 -0.02 0.75 16 29 C 0.05 0.60 6.98 37.31 0.26 0.86 16 30 O -0.36 -6.01 9.22 -35.23 -0.32 -6.33 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 1.08 7.68 -51.93 -0.40 0.68 16 34 H 0.39 10.29 7.20 -40.82 -0.29 10.00 16 35 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.10 1.99 7.26 -51.93 -0.38 1.61 16 37 H 0.10 1.76 7.11 -51.93 -0.37 1.39 16 38 H 0.19 1.06 7.53 -52.48 -0.40 0.67 16 39 H 0.13 1.70 7.45 -51.93 -0.39 1.32 16 40 H 0.10 0.94 7.90 -51.93 -0.41 0.53 16 41 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.09 0.78 4.72 -51.93 -0.25 0.54 16 45 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 46 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 383.43 15.07 5.78 5.78 Total: -1.00 -34.47 383.43 -9.55 -44.02 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -8.28 Total: 9.49 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -2.39 Total: 0.32 kcal Atomic # 7 Polarization: -61.20 SS G_CDS: 0.61 Total: -60.59 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.24 Total: -16.38 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.47 -9.55 -44.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485646836.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.922 kcal (2) G-P(sol) polarization free energy of solvation -34.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds