Wall clock time and date at job start Tue Mar 31 2020 19:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47376 * 2 1 4 4 N 1.46499 * 109.47285 * 239.99566 * 2 1 3 5 5 C 1.36942 * 119.99614 * 85.00674 * 4 2 1 6 6 H 1.07998 * 120.00092 * 359.97438 * 5 4 2 7 7 C 1.38807 * 119.99541 * 180.02562 * 5 4 2 8 8 N 1.31619 * 120.00813 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99716 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47218 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47263 * 119.99955 * 9 7 5 12 12 H 1.48505 * 109.46840 * 239.99894 * 9 7 5 13 13 C 1.53002 * 109.46592 * 119.99952 * 2 1 3 14 14 H 1.09003 * 109.51281 * 299.89433 * 13 2 1 15 15 C 1.53301 * 109.50950 * 179.74629 * 13 2 1 16 16 N 1.47155 * 108.38461 * 187.77201 * 15 13 2 17 17 C 1.34773 * 120.98352 * 230.55818 * 16 15 13 18 18 O 1.21603 * 119.99939 * 355.72193 * 17 16 15 19 19 C 1.47428 * 120.00230 * 175.71573 * 17 16 15 20 20 C 1.38047 * 126.41193 * 48.51036 * 19 17 16 21 21 N 1.34254 * 107.42028 * 179.97438 * 20 19 17 22 22 H 0.96996 * 125.75983 * 180.02562 * 21 20 19 23 23 N 1.39936 * 108.49069 * 359.97438 * 21 20 19 24 24 C 1.30448 * 108.89514 * 359.73511 * 23 21 20 25 25 C 1.50701 * 125.98760 * 180.26224 * 24 23 21 26 26 C 1.52998 * 117.50210 * 8.79592 * 25 24 23 27 27 C 1.53001 * 117.49890 * 300.17162 * 25 24 23 28 28 C 1.47151 * 118.03367 * 50.53682 * 16 15 13 29 29 C 1.53295 * 108.38308 * 309.46292 * 28 16 15 30 30 O 1.42954 * 109.51460 * 60.00362 * 13 2 1 31 31 H 1.09006 * 109.46871 * 60.00346 * 1 2 3 32 32 H 1.08999 * 109.47176 * 300.00283 * 1 2 3 33 33 H 1.09001 * 109.47376 * 180.02562 * 1 2 3 34 34 H 0.96998 * 120.00164 * 264.99669 * 4 2 1 35 35 H 0.96996 * 120.00987 * 180.02562 * 8 7 5 36 36 H 1.08991 * 109.68271 * 307.49974 * 15 13 2 37 37 H 1.09007 * 109.68318 * 68.05271 * 15 13 2 38 38 H 1.08004 * 126.29121 * 0.02562 * 20 19 17 39 39 H 1.09005 * 115.54958 * 154.50611 * 25 24 23 40 40 H 1.09003 * 117.49678 * 0.02562 * 26 25 24 41 41 H 1.08998 * 117.49891 * 145.01732 * 26 25 24 42 42 H 1.08998 * 117.50194 * 214.98003 * 27 25 24 43 43 H 1.09000 * 117.50136 * 0.02562 * 27 25 24 44 44 H 1.09000 * 109.68076 * 189.74197 * 28 16 15 45 45 H 1.08992 * 109.71652 * 69.20529 * 28 16 15 46 46 H 1.08997 * 109.51793 * 292.37708 * 29 28 16 47 47 H 1.09004 * 109.51373 * 172.22850 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1493 -0.0075 -2.3757 6 1 1.8921 1.0403 -2.4243 7 6 2.6115 -0.6621 -3.5091 8 7 2.9244 -1.9392 -3.4501 9 14 2.7894 0.2696 -5.1184 10 1 2.3746 1.6818 -4.9213 11 1 4.2061 0.2266 -5.5614 12 1 1.9282 -0.3590 -6.1521 13 6 2.0399 -0.7213 1.2493 14 1 1.6784 -0.2068 2.1397 15 6 3.5728 -0.7274 1.2471 16 7 4.0351 -1.5830 2.3515 17 6 4.9536 -1.1415 3.2336 18 8 5.4702 -0.0515 3.0791 19 6 5.3318 -1.9798 4.3858 20 6 5.6755 -3.3163 4.3490 21 7 5.9492 -3.6956 5.6074 22 1 6.2202 -4.5846 5.8852 23 7 5.7789 -2.5920 6.4507 24 6 5.4173 -1.5641 5.7334 25 6 5.1360 -0.1774 6.2519 26 6 5.4809 0.1138 7.7138 27 6 4.0185 -0.0228 7.2855 28 6 3.4646 -2.9346 2.4647 29 6 1.9370 -2.8209 2.4076 30 8 1.5639 -2.0692 1.2502 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 0.5139 0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 2.2491 -1.6318 -1.1525 35 1 3.2478 -2.3965 -4.2420 36 1 3.9370 -1.1230 0.2991 37 1 3.9443 0.2876 1.3889 38 1 5.7174 -3.9416 3.4694 39 1 5.2710 0.6300 5.5322 40 1 5.9118 -0.6976 8.3005 41 1 5.8433 1.1128 7.9561 42 1 3.4186 0.8864 7.2460 43 1 3.4870 -0.9242 7.5908 44 1 3.7643 -3.3814 3.4128 45 1 3.8178 -3.5531 1.6397 46 1 1.5758 -2.3145 3.3026 47 1 1.4995 -3.8177 2.3509 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485646836.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:11 Heat of formation + Delta-G solvation = 20.691001 kcal Electronic energy + Delta-G solvation = -29674.772981 eV Core-core repulsion = 25666.935138 eV Total energy + Delta-G solvation = -4007.837843 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.61818 -41.05141 -39.35568 -38.04154 -37.05735 -35.71503 -34.15380 -32.52247 -32.09791 -31.13706 -30.08010 -28.71377 -25.95248 -25.20788 -24.92463 -24.48308 -23.28325 -22.62378 -21.18440 -20.87468 -20.23434 -19.35926 -18.82346 -17.94765 -17.50182 -16.93557 -16.63925 -16.50958 -16.29868 -15.99003 -15.84778 -15.73605 -15.38758 -15.09057 -14.99007 -14.62612 -14.32782 -14.02727 -13.88956 -13.46546 -13.10418 -12.97706 -12.94735 -12.78099 -12.49096 -12.47558 -12.43539 -12.21978 -12.11027 -11.98256 -11.77356 -11.65719 -11.50825 -11.32827 -11.06830 -10.94059 -10.88781 -10.30144 -9.84848 -9.51309 -8.91593 -7.87351 -5.13994 0.55763 1.01861 1.49583 1.50101 1.59506 1.64583 1.85744 2.09040 2.59987 2.83220 2.97951 3.29253 3.46695 3.53125 3.72780 3.84246 3.97261 3.99285 4.00031 4.03164 4.11832 4.16523 4.21274 4.34639 4.35057 4.41186 4.57081 4.62437 4.65335 4.75027 4.80273 4.84936 4.88294 4.92205 5.05509 5.12685 5.13984 5.23129 5.24337 5.26889 5.38437 5.57244 5.63295 6.22259 6.28980 6.34890 6.36073 6.51267 7.11810 7.42113 8.18000 8.43917 9.36047 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017483 B = 0.002900 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.191885 B = 9652.440768 C = 9826.489487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.173 3.827 3 H 0.058 0.942 4 N -0.725 5.725 5 C -0.232 4.232 6 H 0.074 0.926 7 C -0.074 4.074 8 N -0.966 5.966 9 Si 0.965 3.035 10 H -0.268 1.268 11 H -0.297 1.297 12 H -0.296 1.296 13 C 0.094 3.906 14 H 0.074 0.926 15 C 0.098 3.902 16 N -0.605 5.605 17 C 0.594 3.406 18 O -0.583 6.583 19 C -0.305 4.305 20 C 0.125 3.875 21 N -0.441 5.441 22 H 0.463 0.537 23 N -0.310 5.310 24 C 0.150 3.850 25 C -0.116 4.116 26 C -0.151 4.151 27 C -0.149 4.149 28 C 0.067 3.933 29 C 0.043 3.957 30 O -0.382 6.382 31 H 0.038 0.962 32 H 0.066 0.934 33 H 0.045 0.955 34 H 0.378 0.622 35 H 0.248 0.752 36 H 0.061 0.939 37 H 0.079 0.921 38 H 0.224 0.776 39 H 0.111 0.889 40 H 0.101 0.899 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.097 0.903 44 H 0.122 0.878 45 H 0.082 0.918 46 H 0.060 0.940 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.154 -5.666 24.394 25.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.064 3.936 3 H 0.076 0.924 4 N -0.366 5.366 5 C -0.364 4.364 6 H 0.092 0.908 7 C -0.267 4.267 8 N -0.617 5.617 9 Si 0.795 3.205 10 H -0.192 1.192 11 H -0.225 1.225 12 H -0.223 1.223 13 C 0.035 3.965 14 H 0.092 0.908 15 C -0.025 4.025 16 N -0.337 5.337 17 C 0.384 3.616 18 O -0.463 6.463 19 C -0.320 4.320 20 C -0.028 4.028 21 N -0.148 5.148 22 H 0.312 0.688 23 N -0.133 5.133 24 C -0.017 4.017 25 C -0.136 4.136 26 C -0.188 4.188 27 C -0.187 4.187 28 C -0.055 4.055 29 C -0.034 4.034 30 O -0.301 6.301 31 H 0.057 0.943 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.211 0.789 35 H 0.057 0.943 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.240 0.760 39 H 0.129 0.871 40 H 0.119 0.881 41 H 0.132 0.868 42 H 0.132 0.868 43 H 0.116 0.884 44 H 0.139 0.861 45 H 0.101 0.899 46 H 0.079 0.921 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.590 -5.465 25.236 25.950 hybrid contribution 0.477 -0.004 -2.047 2.102 sum 3.067 -5.468 23.188 24.021 Atomic orbital electron populations 1.22171 0.97007 1.01134 1.00503 1.20496 0.93660 0.94606 0.84834 0.92382 1.42489 1.77948 1.10527 1.05680 1.19647 1.34329 0.94072 0.88364 0.90775 1.25433 1.03371 0.96822 1.01031 1.69821 1.52854 1.10025 1.29017 0.85186 0.76556 0.78284 0.80444 1.19196 1.22472 1.22329 1.22599 0.91414 0.84041 0.98477 0.90785 1.22053 0.95354 0.95972 0.89166 1.48106 1.41153 1.16455 1.27983 1.17718 0.77845 0.85054 0.80989 1.90735 1.55099 1.24419 1.76090 1.20003 1.22705 0.95460 0.93844 1.23550 0.94474 0.94067 0.90759 1.46056 1.52153 1.12351 1.04198 0.68791 1.77016 1.25206 0.93771 1.17268 1.21441 0.95697 0.94414 0.90134 1.20435 1.08184 0.91080 0.93922 1.23036 0.98159 1.03983 0.93632 1.23063 0.91583 1.04194 0.99841 1.22822 0.95102 0.82750 1.04803 1.23180 0.93522 0.98287 0.88432 1.88060 1.75410 1.23522 1.43112 0.94299 0.91489 0.93539 0.78881 0.94309 0.92046 0.90206 0.75987 0.87130 0.88058 0.86847 0.86829 0.88413 0.86052 0.89943 0.92142 0.85385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.32 9.35 71.98 0.67 -4.65 16 2 C 0.17 6.84 2.74 44.99 0.12 6.96 16 3 H 0.06 2.31 8.08 -2.39 -0.02 2.29 16 4 N -0.73 -36.25 4.29 -322.94 -1.38 -37.64 16 5 C -0.23 -12.83 9.93 84.03 0.83 -12.00 16 6 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 7 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 8 N -0.97 -59.09 13.06 21.65 0.28 -58.81 16 9 Si 0.97 46.72 29.55 68.60 2.03 48.75 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 12 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 13 C 0.09 3.15 2.53 30.70 0.08 3.22 16 14 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 15 C 0.10 3.50 5.85 86.36 0.51 4.01 16 16 N -0.60 -17.57 3.02 -821.23 -2.48 -20.05 16 17 C 0.59 18.41 7.39 86.66 0.64 19.05 16 18 O -0.58 -23.00 15.87 -4.04 -0.06 -23.07 16 19 C -0.31 -7.21 5.19 -20.15 -0.10 -7.31 16 20 C 0.13 1.79 9.65 84.28 0.81 2.60 16 21 N -0.44 -5.48 7.29 -56.32 -0.41 -5.89 16 22 H 0.46 1.95 8.96 -213.43 -1.91 0.04 16 23 N -0.31 -6.23 12.22 -46.68 -0.57 -6.80 16 24 C 0.15 3.53 6.80 43.51 0.30 3.83 16 25 C -0.12 -2.63 6.04 -11.54 -0.07 -2.70 16 26 C -0.15 -2.58 10.14 30.59 0.31 -2.27 16 27 C -0.15 -2.54 10.23 30.60 0.31 -2.23 16 28 C 0.07 1.40 5.98 86.35 0.52 1.91 16 29 C 0.04 0.94 6.98 72.08 0.50 1.44 16 30 O -0.38 -12.39 9.22 -148.98 -1.37 -13.76 16 31 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.07 1.93 8.14 -2.39 -0.02 1.92 16 33 H 0.05 1.75 7.68 -2.39 -0.02 1.73 16 34 H 0.38 20.54 7.20 -92.71 -0.67 19.88 16 35 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 36 H 0.06 2.64 7.26 -2.39 -0.02 2.63 16 37 H 0.08 3.08 7.11 -2.38 -0.02 3.06 16 38 H 0.22 1.53 7.53 -2.91 -0.02 1.51 16 39 H 0.11 2.99 7.45 -2.38 -0.02 2.97 16 40 H 0.10 1.74 7.90 -2.39 -0.02 1.72 16 41 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.12 1.70 4.72 -2.39 -0.01 1.69 16 45 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.13 2.11 8.14 -2.38 -0.02 2.09 16 Total: -1.00 -77.69 383.43 0.36 -77.33 By element: Atomic # 1 Polarization: 33.44 SS G_CDS: -1.57 Total: 31.87 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: 5.90 Total: 8.06 kcal Atomic # 7 Polarization: -124.63 SS G_CDS: -4.56 Total: -129.19 kcal Atomic # 8 Polarization: -35.39 SS G_CDS: -1.44 Total: -36.83 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -77.69 0.36 -77.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485646836.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.020 kcal (2) G-P(sol) polarization free energy of solvation -77.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds