Wall clock time and date at job start Tue Mar 31 2020 19:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46421 * 2 1 4 4 N 1.46496 * 109.47345 * 239.99560 * 2 1 3 5 5 C 1.36936 * 119.99737 * 85.00200 * 4 2 1 6 6 H 1.08003 * 120.00493 * 359.97438 * 5 4 2 7 7 C 1.38813 * 120.00016 * 179.97438 * 5 4 2 8 8 N 1.31614 * 119.99937 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00158 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47240 * 90.00164 * 9 7 5 11 11 H 1.48500 * 109.46973 * 210.00019 * 9 7 5 12 12 H 1.48505 * 109.47036 * 329.99796 * 9 7 5 13 13 C 1.52997 * 109.46620 * 119.99637 * 2 1 3 14 14 H 1.09000 * 109.51185 * 175.00366 * 13 2 1 15 15 C 1.53298 * 109.51455 * 295.10131 * 13 2 1 16 16 N 1.47166 * 108.37659 * 172.17594 * 15 13 2 17 17 C 1.34775 * 120.94489 * 129.48492 * 16 15 13 18 18 O 1.21607 * 119.99498 * 354.77457 * 17 16 15 19 19 C 1.47427 * 120.00224 * 174.77625 * 17 16 15 20 20 C 1.38043 * 126.41439 * 321.96504 * 19 17 16 21 21 N 1.34268 * 107.41361 * 179.87358 * 20 19 17 22 22 H 0.96999 * 125.75020 * 180.14998 * 21 20 19 23 23 N 1.39928 * 108.49142 * 0.39457 * 21 20 19 24 24 C 1.30445 * 108.90248 * 359.75224 * 23 21 20 25 25 C 1.50693 * 125.99313 * 180.02562 * 24 23 21 26 26 C 1.52999 * 117.49721 * 8.58331 * 25 24 23 27 27 C 1.53004 * 60.00212 * 252.50818 * 26 25 24 28 28 C 1.47153 * 118.07691 * 309.55411 * 16 15 13 29 29 C 1.53296 * 108.38569 * 50.49797 * 28 16 15 30 30 O 1.42959 * 109.22332 * 307.69926 * 29 28 16 31 31 H 1.09002 * 109.46806 * 60.00757 * 1 2 3 32 32 H 1.09003 * 109.46940 * 179.97438 * 1 2 3 33 33 H 1.08989 * 109.47839 * 300.00382 * 1 2 3 34 34 H 0.96999 * 120.00392 * 265.00326 * 4 2 1 35 35 H 0.97004 * 120.00377 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.68277 * 291.95052 * 15 13 2 37 37 H 1.09004 * 109.67725 * 52.50815 * 15 13 2 38 38 H 1.07999 * 126.29091 * 0.03104 * 20 19 17 39 39 H 1.09003 * 115.55052 * 154.28532 * 25 24 23 40 40 H 1.08998 * 117.50270 * 359.97438 * 26 25 24 41 41 H 1.09000 * 117.50006 * 145.02159 * 26 25 24 42 42 H 1.08998 * 117.49790 * 252.51477 * 27 26 25 43 43 H 1.08997 * 117.52058 * 107.47901 * 27 26 25 44 44 H 1.08999 * 109.68127 * 290.77310 * 28 16 15 45 45 H 1.08999 * 109.68449 * 170.22416 * 28 16 15 46 46 H 1.09005 * 109.51147 * 187.77808 * 29 28 16 47 47 H 1.08993 * 109.51233 * 67.62786 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1492 -0.0076 -2.3756 6 1 1.8920 1.0403 -2.4244 7 6 2.6125 -0.6618 -3.5089 8 7 2.9255 -1.9388 -3.4497 9 14 2.7917 0.2702 -5.1179 10 1 4.1539 0.8552 -5.2020 11 1 2.5818 -0.6611 -6.2554 12 1 1.7816 1.3572 -5.1754 13 6 2.0399 -0.7212 1.2493 14 1 3.1262 -0.7998 1.2064 15 6 1.6326 0.0685 2.4985 16 7 1.9665 -0.7355 3.6850 17 6 2.6715 -0.2067 4.7046 18 8 3.1227 0.9189 4.6124 19 6 2.8958 -0.9926 5.9316 20 6 1.9919 -1.8421 6.5373 21 7 2.5908 -2.3586 7.6224 22 1 2.1939 -2.9909 8.2417 23 7 3.8819 -1.8266 7.7122 24 6 4.0741 -1.0125 6.7113 25 6 5.3324 -0.2309 6.4345 26 6 6.5627 -0.5476 7.2870 27 6 5.7981 0.7600 7.5033 28 6 1.5097 -2.1338 3.7250 29 6 1.9240 -2.8155 2.4160 30 8 1.4686 -2.0302 1.3117 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8898 34 1 2.2491 -1.6318 -1.1525 35 1 3.2489 -2.3962 -4.2417 36 1 2.1761 1.0129 2.5292 37 1 0.5601 0.2620 2.4770 38 1 0.9885 -2.0543 6.1990 39 1 5.4983 0.0390 5.3915 40 1 6.4619 -1.3210 8.0484 41 1 7.5384 -0.4862 6.8051 42 1 6.2708 1.6815 7.1635 43 1 5.1941 0.8467 8.4065 44 1 0.4248 -2.1628 3.8266 45 1 1.9716 -2.6470 4.5684 46 1 1.4773 -3.8085 2.3654 47 1 3.0099 -2.9017 2.3783 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485646837.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:16 Heat of formation + Delta-G solvation = 46.289186 kcal Electronic energy + Delta-G solvation = -29327.547420 eV Core-core repulsion = 25320.819598 eV Total energy + Delta-G solvation = -4006.727822 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.87159 -39.99263 -38.15970 -37.28483 -35.49239 -34.49395 -32.54327 -31.76650 -31.01068 -30.01835 -28.44131 -27.12699 -24.83277 -24.36120 -23.58490 -23.28247 -22.54431 -21.61104 -20.08721 -19.62412 -19.46313 -18.02554 -17.24524 -16.87094 -16.27856 -15.92145 -15.75451 -15.48181 -15.06720 -14.97175 -14.76713 -14.45197 -14.34284 -13.92372 -13.53054 -13.31556 -13.06999 -12.84148 -12.49959 -12.18517 -12.15471 -11.97027 -11.73304 -11.46783 -11.31949 -11.22091 -11.10856 -10.82577 -10.69730 -10.58518 -10.48424 -10.25066 -10.04012 -9.82732 -9.79354 -9.62803 -9.56619 -9.06520 -8.86824 -8.42830 -6.90407 -5.70838 -2.99397 1.20683 1.83900 2.29258 2.80714 3.09310 3.47143 3.52269 3.53819 3.76812 3.99572 4.03079 4.25409 4.57561 4.59862 4.65783 4.77291 4.80750 4.86934 4.92051 5.08347 5.11081 5.23772 5.31517 5.37072 5.46939 5.47789 5.62104 5.64240 5.70232 5.73533 5.85112 5.93261 5.95546 6.01234 6.02976 6.04600 6.24513 6.42369 6.49511 6.67933 6.71195 6.85225 7.16402 7.18919 7.34427 7.50299 7.74570 8.15435 8.47424 9.59292 10.17196 10.53750 11.51648 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017839 B = 0.002645 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.196461 B =10583.242540 C =11209.974874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.185 3.815 3 H 0.060 0.940 4 N -0.719 5.719 5 C -0.238 4.238 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.931 5.931 9 Si 0.906 3.094 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C 0.076 3.924 14 H 0.064 0.936 15 C 0.085 3.915 16 N -0.610 5.610 17 C 0.594 3.406 18 O -0.533 6.533 19 C -0.273 4.273 20 C 0.099 3.901 21 N -0.461 5.461 22 H 0.444 0.556 23 N -0.295 5.295 24 C 0.163 3.837 25 C -0.083 4.083 26 C -0.167 4.167 27 C -0.154 4.154 28 C 0.068 3.932 29 C 0.046 3.954 30 O -0.358 6.358 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.035 0.965 34 H 0.389 0.611 35 H 0.254 0.746 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.188 0.812 39 H 0.129 0.871 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.103 0.897 43 H 0.094 0.906 44 H 0.076 0.924 45 H 0.091 0.909 46 H 0.102 0.898 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.757 -2.408 25.719 25.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.074 3.926 3 H 0.077 0.923 4 N -0.361 5.361 5 C -0.369 4.369 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.579 5.579 9 Si 0.737 3.263 10 H -0.218 1.218 11 H -0.219 1.219 12 H -0.208 1.208 13 C 0.017 3.983 14 H 0.082 0.918 15 C -0.038 4.038 16 N -0.344 5.344 17 C 0.382 3.618 18 O -0.409 6.409 19 C -0.288 4.288 20 C -0.053 4.053 21 N -0.166 5.166 22 H 0.289 0.711 23 N -0.118 5.118 24 C -0.004 4.004 25 C -0.104 4.104 26 C -0.205 4.205 27 C -0.193 4.193 28 C -0.056 4.056 29 C -0.032 4.032 30 O -0.276 6.276 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.053 0.947 34 H 0.223 0.777 35 H 0.064 0.936 36 H 0.120 0.880 37 H 0.099 0.901 38 H 0.205 0.795 39 H 0.146 0.854 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.113 0.887 44 H 0.094 0.906 45 H 0.109 0.891 46 H 0.120 0.880 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.131 -2.271 26.413 26.535 hybrid contribution -0.511 0.007 -1.131 1.241 sum -1.642 -2.264 25.282 25.437 Atomic orbital electron populations 1.22413 0.98701 1.01571 0.99524 1.20197 0.92785 0.94637 0.84970 0.92271 1.42355 1.77854 1.10960 1.04907 1.19251 1.36452 0.93853 0.87360 0.91169 1.24734 1.02259 0.95954 0.98009 1.69677 1.50856 1.08628 1.28788 0.86210 0.77770 0.78584 0.83751 1.21778 1.21854 1.20781 1.22974 0.97676 0.82972 0.94719 0.91831 1.22495 1.01821 0.95881 0.83586 1.48023 1.55106 1.12490 1.18778 1.17290 0.77386 0.85471 0.81659 1.90784 1.49797 1.19007 1.81325 1.20164 0.96545 1.09486 1.02598 1.23209 0.99166 0.94153 0.88804 1.46064 1.11337 1.36950 1.22277 0.71077 1.77090 0.96194 1.15772 1.22702 1.21389 0.94367 0.93939 0.90665 1.20349 0.89698 1.01719 0.98598 1.23034 0.95247 0.99589 1.02592 1.22954 1.02887 0.94039 0.99377 1.22674 1.00300 0.82259 1.00346 1.22885 0.99585 0.95103 0.85613 1.88096 1.67645 1.25812 1.46056 0.92935 0.92479 0.94660 0.77687 0.93601 0.88049 0.90134 0.79479 0.85351 0.88056 0.88123 0.87889 0.88739 0.90551 0.89080 0.88000 0.92852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 9.06 37.16 0.34 -2.62 16 2 C 0.18 3.69 2.77 -67.93 -0.19 3.50 16 3 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 4 N -0.72 -18.28 5.10 -53.43 -0.27 -18.56 16 5 C -0.24 -6.65 9.93 -15.06 -0.15 -6.80 16 6 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 8 N -0.93 -28.44 13.06 55.49 0.72 -27.71 16 9 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 10 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 11 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 C 0.08 1.30 2.60 -26.58 -0.07 1.23 16 14 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 15 C 0.08 1.22 5.84 -3.52 -0.02 1.20 16 16 N -0.61 -7.75 3.02 -173.53 -0.52 -8.27 16 17 C 0.59 8.24 7.49 -12.52 -0.09 8.15 16 18 O -0.53 -9.16 15.87 5.27 0.08 -9.07 16 19 C -0.27 -3.10 5.29 -105.06 -0.56 -3.66 16 20 C 0.10 0.72 9.64 -16.56 -0.16 0.57 16 21 N -0.46 -3.20 7.29 30.85 0.22 -2.97 16 22 H 0.44 1.39 8.96 -182.73 -1.64 -0.25 16 23 N -0.30 -3.11 12.22 33.89 0.41 -2.70 16 24 C 0.16 1.93 6.79 -82.02 -0.56 1.37 16 25 C -0.08 -0.95 5.69 -91.77 -0.52 -1.47 16 26 C -0.17 -1.52 10.14 -26.73 -0.27 -1.79 16 27 C -0.15 -1.48 10.24 -26.73 -0.27 -1.75 16 28 C 0.07 0.65 5.52 -3.53 -0.02 0.63 16 29 C 0.05 0.56 6.98 37.31 0.26 0.82 16 30 O -0.36 -5.96 9.24 -35.23 -0.33 -6.29 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 1.09 7.56 -51.93 -0.39 0.70 16 33 H 0.03 0.53 6.42 -51.94 -0.33 0.19 16 34 H 0.39 10.68 7.58 -40.82 -0.31 10.37 16 35 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.10 1.56 7.06 -51.93 -0.37 1.19 16 37 H 0.08 1.08 6.27 -51.93 -0.33 0.76 16 38 H 0.19 0.72 7.15 -52.49 -0.38 0.34 16 39 H 0.13 1.59 7.91 -51.93 -0.41 1.18 16 40 H 0.10 0.93 7.90 -51.93 -0.41 0.52 16 41 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.09 0.69 4.91 -51.93 -0.26 0.43 16 46 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 381.23 15.07 5.75 5.75 Total: -1.00 -35.50 381.23 -9.50 -45.00 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -8.16 Total: 8.37 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -2.38 Total: -1.11 kcal Atomic # 7 Polarization: -60.77 SS G_CDS: 0.57 Total: -60.21 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.24 Total: -15.36 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.50 -9.50 -45.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485646837.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.291 kcal (2) G-P(sol) polarization free energy of solvation -35.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds