Wall clock time and date at job start Tue Mar 31 2020 19:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46421 * 2 1 4 4 N 1.46496 * 109.47345 * 239.99560 * 2 1 3 5 5 C 1.36936 * 119.99737 * 85.00200 * 4 2 1 6 6 H 1.08003 * 120.00493 * 359.97438 * 5 4 2 7 7 C 1.38813 * 120.00016 * 179.97438 * 5 4 2 8 8 N 1.31614 * 119.99937 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00158 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47240 * 90.00164 * 9 7 5 11 11 H 1.48500 * 109.46973 * 210.00019 * 9 7 5 12 12 H 1.48505 * 109.47036 * 329.99796 * 9 7 5 13 13 C 1.52997 * 109.46620 * 119.99637 * 2 1 3 14 14 H 1.09000 * 109.51185 * 175.00366 * 13 2 1 15 15 C 1.53298 * 109.51455 * 295.10131 * 13 2 1 16 16 N 1.47166 * 108.37659 * 172.17594 * 15 13 2 17 17 C 1.34775 * 120.94489 * 129.48492 * 16 15 13 18 18 O 1.21607 * 119.99498 * 354.77457 * 17 16 15 19 19 C 1.47427 * 120.00224 * 174.77625 * 17 16 15 20 20 C 1.38043 * 126.41439 * 321.96504 * 19 17 16 21 21 N 1.34268 * 107.41361 * 179.87358 * 20 19 17 22 22 H 0.96999 * 125.75020 * 180.14998 * 21 20 19 23 23 N 1.39928 * 108.49142 * 0.39457 * 21 20 19 24 24 C 1.30445 * 108.90248 * 359.75224 * 23 21 20 25 25 C 1.50693 * 125.99313 * 180.02562 * 24 23 21 26 26 C 1.52999 * 117.49721 * 8.58331 * 25 24 23 27 27 C 1.53004 * 60.00212 * 252.50818 * 26 25 24 28 28 C 1.47153 * 118.07691 * 309.55411 * 16 15 13 29 29 C 1.53296 * 108.38569 * 50.49797 * 28 16 15 30 30 O 1.42959 * 109.22332 * 307.69926 * 29 28 16 31 31 H 1.09002 * 109.46806 * 60.00757 * 1 2 3 32 32 H 1.09003 * 109.46940 * 179.97438 * 1 2 3 33 33 H 1.08989 * 109.47839 * 300.00382 * 1 2 3 34 34 H 0.96999 * 120.00392 * 265.00326 * 4 2 1 35 35 H 0.97004 * 120.00377 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.68277 * 291.95052 * 15 13 2 37 37 H 1.09004 * 109.67725 * 52.50815 * 15 13 2 38 38 H 1.07999 * 126.29091 * 0.03104 * 20 19 17 39 39 H 1.09003 * 115.55052 * 154.28532 * 25 24 23 40 40 H 1.08998 * 117.50270 * 359.97438 * 26 25 24 41 41 H 1.09000 * 117.50006 * 145.02159 * 26 25 24 42 42 H 1.08998 * 117.49790 * 252.51477 * 27 26 25 43 43 H 1.08997 * 117.52058 * 107.47901 * 27 26 25 44 44 H 1.08999 * 109.68127 * 290.77310 * 28 16 15 45 45 H 1.08999 * 109.68449 * 170.22416 * 28 16 15 46 46 H 1.09005 * 109.51147 * 187.77808 * 29 28 16 47 47 H 1.08993 * 109.51233 * 67.62786 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1492 -0.0076 -2.3756 6 1 1.8920 1.0403 -2.4244 7 6 2.6125 -0.6618 -3.5089 8 7 2.9255 -1.9388 -3.4497 9 14 2.7917 0.2702 -5.1179 10 1 4.1539 0.8552 -5.2020 11 1 2.5818 -0.6611 -6.2554 12 1 1.7816 1.3572 -5.1754 13 6 2.0399 -0.7212 1.2493 14 1 3.1262 -0.7998 1.2064 15 6 1.6326 0.0685 2.4985 16 7 1.9665 -0.7355 3.6850 17 6 2.6715 -0.2067 4.7046 18 8 3.1227 0.9189 4.6124 19 6 2.8958 -0.9926 5.9316 20 6 1.9919 -1.8421 6.5373 21 7 2.5908 -2.3586 7.6224 22 1 2.1939 -2.9909 8.2417 23 7 3.8819 -1.8266 7.7122 24 6 4.0741 -1.0125 6.7113 25 6 5.3324 -0.2309 6.4345 26 6 6.5627 -0.5476 7.2870 27 6 5.7981 0.7600 7.5033 28 6 1.5097 -2.1338 3.7250 29 6 1.9240 -2.8155 2.4160 30 8 1.4686 -2.0302 1.3117 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8898 34 1 2.2491 -1.6318 -1.1525 35 1 3.2489 -2.3962 -4.2417 36 1 2.1761 1.0129 2.5292 37 1 0.5601 0.2620 2.4770 38 1 0.9885 -2.0543 6.1990 39 1 5.4983 0.0390 5.3915 40 1 6.4619 -1.3210 8.0484 41 1 7.5384 -0.4862 6.8051 42 1 6.2708 1.6815 7.1635 43 1 5.1941 0.8467 8.4065 44 1 0.4248 -2.1628 3.8266 45 1 1.9716 -2.6470 4.5684 46 1 1.4773 -3.8085 2.3654 47 1 3.0099 -2.9017 2.3783 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485646837.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:15 Heat of formation + Delta-G solvation = 20.462939 kcal Electronic energy + Delta-G solvation = -29328.667331 eV Core-core repulsion = 25320.819598 eV Total energy + Delta-G solvation = -4007.847732 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.61864 -41.07762 -39.34746 -38.05088 -37.08246 -35.69165 -34.33226 -32.52540 -32.19804 -31.18959 -29.94358 -28.37315 -26.43033 -25.19110 -24.85829 -24.49525 -23.29955 -22.68441 -21.13147 -20.92240 -20.24140 -19.28461 -18.81443 -17.89343 -17.51241 -16.98075 -16.71570 -16.52637 -16.35108 -16.06028 -15.88918 -15.53747 -15.49265 -15.25635 -15.04315 -14.43320 -14.32291 -14.07719 -13.92675 -13.58915 -13.16328 -12.97541 -12.95868 -12.81640 -12.45279 -12.41771 -12.34874 -12.21244 -12.16473 -12.00525 -11.80016 -11.61817 -11.52365 -11.35124 -11.11010 -10.92508 -10.89472 -10.29718 -9.86387 -9.48854 -8.98536 -7.90600 -5.19030 0.54587 0.98959 1.48261 1.50190 1.58344 1.65236 1.89962 2.16220 2.58229 2.81637 2.99043 3.29369 3.43194 3.52967 3.62026 3.82387 3.96429 3.98051 3.99677 4.04048 4.09925 4.16037 4.18086 4.33139 4.39038 4.43272 4.53493 4.61437 4.64111 4.68139 4.73514 4.82635 4.85944 4.90665 4.99722 5.10873 5.13609 5.22140 5.24939 5.28790 5.38307 5.53650 5.66452 6.23783 6.27325 6.30784 6.33543 6.51817 7.14118 7.37287 8.13468 8.38003 9.33013 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017839 B = 0.002645 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.196461 B =10583.242540 C =11209.974874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.175 3.825 3 H 0.057 0.943 4 N -0.733 5.733 5 C -0.238 4.238 6 H 0.077 0.923 7 C -0.078 4.078 8 N -0.970 5.970 9 Si 0.972 3.028 10 H -0.289 1.289 11 H -0.296 1.296 12 H -0.268 1.268 13 C 0.091 3.909 14 H 0.033 0.967 15 C 0.096 3.904 16 N -0.609 5.609 17 C 0.593 3.407 18 O -0.578 6.578 19 C -0.311 4.311 20 C 0.133 3.867 21 N -0.441 5.441 22 H 0.463 0.537 23 N -0.314 5.314 24 C 0.148 3.852 25 C -0.107 4.107 26 C -0.151 4.151 27 C -0.151 4.151 28 C 0.073 3.927 29 C 0.037 3.963 30 O -0.380 6.380 31 H 0.035 0.965 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.375 0.625 35 H 0.249 0.751 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.233 0.767 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.112 0.888 42 H 0.109 0.891 43 H 0.094 0.906 44 H 0.109 0.891 45 H 0.117 0.883 46 H 0.131 0.869 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.626 -3.008 27.828 28.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.067 3.933 3 H 0.075 0.925 4 N -0.373 5.373 5 C -0.370 4.370 6 H 0.095 0.905 7 C -0.270 4.270 8 N -0.621 5.621 9 Si 0.801 3.199 10 H -0.216 1.216 11 H -0.223 1.223 12 H -0.193 1.193 13 C 0.031 3.969 14 H 0.051 0.949 15 C -0.028 4.028 16 N -0.342 5.342 17 C 0.383 3.617 18 O -0.458 6.458 19 C -0.326 4.326 20 C -0.021 4.021 21 N -0.148 5.148 22 H 0.312 0.688 23 N -0.137 5.137 24 C -0.018 4.018 25 C -0.128 4.128 26 C -0.189 4.189 27 C -0.189 4.189 28 C -0.049 4.049 29 C -0.040 4.040 30 O -0.299 6.299 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.207 0.793 35 H 0.058 0.942 36 H 0.104 0.896 37 H 0.117 0.883 38 H 0.249 0.751 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.131 0.869 42 H 0.127 0.873 43 H 0.112 0.888 44 H 0.127 0.873 45 H 0.135 0.865 46 H 0.148 0.852 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.029 -2.879 28.593 28.896 hybrid contribution 0.049 0.132 -1.669 1.675 sum -2.980 -2.747 26.923 27.227 Atomic orbital electron populations 1.22202 0.96623 1.01275 1.00563 1.20440 0.94077 0.94406 0.84411 0.92534 1.42539 1.78329 1.10454 1.06024 1.19652 1.34781 0.94199 0.88322 0.90535 1.25549 1.03103 0.96890 1.01438 1.69839 1.52687 1.10232 1.29312 0.85162 0.77827 0.77461 0.79459 1.21623 1.22288 1.19329 1.22539 0.95703 0.83939 0.94673 0.94865 1.22226 1.02429 0.94967 0.83138 1.48070 1.54882 1.13546 1.17741 1.17669 0.76438 0.85115 0.82452 1.90751 1.51563 1.21157 1.82341 1.20067 0.97957 1.11876 1.02673 1.23711 0.99675 0.91359 0.87319 1.46105 1.10180 1.36259 1.22262 0.68751 1.77034 0.98053 1.16047 1.22519 1.21456 0.94680 0.94437 0.91274 1.20317 0.91191 1.03368 0.97901 1.23062 0.94982 0.99123 1.01704 1.22992 1.02784 0.94461 0.98692 1.22877 1.02318 0.80195 0.99531 1.23200 0.99014 0.96117 0.85695 1.88047 1.67706 1.25640 1.48466 0.94556 0.93349 0.90861 0.79320 0.94174 0.89570 0.88309 0.75098 0.87601 0.87885 0.86927 0.87268 0.88757 0.87314 0.86493 0.85164 0.94506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.20 9.06 71.98 0.65 -4.54 16 2 C 0.18 7.08 2.77 44.99 0.12 7.20 16 3 H 0.06 2.29 8.08 -2.39 -0.02 2.27 16 4 N -0.73 -38.22 5.10 -322.94 -1.65 -39.86 16 5 C -0.24 -13.47 9.93 84.03 0.83 -12.64 16 6 H 0.08 4.15 7.83 -2.91 -0.02 4.12 16 7 C -0.08 -4.56 5.50 84.86 0.47 -4.10 16 8 N -0.97 -60.78 13.06 21.65 0.28 -60.50 16 9 Si 0.97 47.08 29.55 68.60 2.03 49.11 16 10 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 11 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 12 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 13 C 0.09 3.14 2.60 30.69 0.08 3.22 16 14 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 15 C 0.10 2.68 5.84 86.35 0.50 3.18 16 16 N -0.61 -14.52 3.02 -821.18 -2.48 -17.00 16 17 C 0.59 16.12 7.49 86.66 0.65 16.77 16 18 O -0.58 -20.51 15.87 -4.05 -0.06 -20.57 16 19 C -0.31 -6.54 5.29 -20.15 -0.11 -6.65 16 20 C 0.13 1.41 9.64 84.27 0.81 2.23 16 21 N -0.44 -4.52 7.29 -56.31 -0.41 -4.93 16 22 H 0.46 0.92 8.96 -213.43 -1.91 -0.99 16 23 N -0.31 -6.03 12.22 -46.68 -0.57 -6.60 16 24 C 0.15 3.39 6.79 43.52 0.30 3.69 16 25 C -0.11 -2.51 5.69 -11.54 -0.07 -2.58 16 26 C -0.15 -2.72 10.14 30.60 0.31 -2.41 16 27 C -0.15 -2.92 10.24 30.60 0.31 -2.61 16 28 C 0.07 1.15 5.52 86.35 0.48 1.63 16 29 C 0.04 0.83 6.98 72.08 0.50 1.34 16 30 O -0.38 -12.40 9.24 -148.98 -1.38 -13.78 16 31 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.05 1.79 7.56 -2.39 -0.02 1.77 16 33 H 0.07 2.01 6.42 -2.39 -0.02 2.00 16 34 H 0.37 21.33 7.58 -92.71 -0.70 20.63 16 35 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 36 H 0.09 2.69 7.06 -2.39 -0.02 2.68 16 37 H 0.10 2.40 6.27 -2.38 -0.01 2.39 16 38 H 0.23 0.29 7.15 -2.91 -0.02 0.27 16 39 H 0.11 2.88 7.91 -2.39 -0.02 2.86 16 40 H 0.10 1.81 7.90 -2.39 -0.02 1.79 16 41 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.12 1.26 4.91 -2.39 -0.01 1.25 16 46 H 0.13 2.18 8.14 -2.38 -0.02 2.16 16 47 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -81.16 381.23 0.01 -81.15 By element: Atomic # 1 Polarization: 30.84 SS G_CDS: -1.60 Total: 29.24 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: 5.85 Total: 3.72 kcal Atomic # 7 Polarization: -124.05 SS G_CDS: -4.83 Total: -128.88 kcal Atomic # 8 Polarization: -32.91 SS G_CDS: -1.44 Total: -34.35 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.11 kcal Total: -81.16 0.01 -81.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485646837.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.618 kcal (2) G-P(sol) polarization free energy of solvation -81.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds